Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Reverse (-)

23905811 .. 23907231

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTATATGGTGTTAATGGTTCGTTTAGGCAATTCTTGTTGTTGGTTTGGAAGAACATATGTTCTAAACTTTATTATGATCGTTATTCTGGTGCCATGGATGCAAGTTACCAGGTCAAGGTCAGTGCTGCTGATGGTTAATCCTGCAGTTTTTCTTGGGGCCGTTGGAATGGGAGTACTACTGCATCTCATCTTGTTAGCCTTTAATGCTGTTGCCGTTAAGAGCCTCTCAGCTCTGTCTGGTGGTAGTGAATCCCTTTTTTTCCAAGAAGGAAAATGCAAATGCTGTTCTCCTTGTTGCAAGCCAGAAAACACTGCCTGTAATGGTGGCTGTGGTGGACCAACTAGGGGGTGCACTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

120

Amino Acids

12.95

Weight (kDa)

8.92

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	91
AdeI	CACNNNGTG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	117, 347
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw21I	GWGCWC	1 cut(s)	356
Alw44I	GTGCAC	1 cut(s)	352
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	352
ApeKI	GCWGC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	159, 338
AvaII	GGWCC	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	2 cut(s)	146, 200
BciT130I	CCWGG	1 cut(s)	112
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	159, 338
BmiI	GGNNCC	2 cut(s)	93, 160
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	90, 193
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 347
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	117, 347
BseMII	CTCAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	114
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	117, 347
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	1 cut(s)	78
Bsp19I	CCATGG	1 cut(s)	95
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	93, 160
BspMAI	CTGCAG	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	229
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 206
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	129, 312
Cac8I	GCNNGC	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	159, 338
CsiI	ACCWGGT	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	1 cut(s)	96
CviJI	RGCY	6 cut(s)	161, 200, 225, 233, 304, 330
CviKI_1	RGCY	6 cut(s)	161, 200, 225, 233, 304, 330
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
DraIII	CACNNNGTG	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	1 cut(s)	99
FaiI	YATR	6 cut(s)	6, 8, 58, 60, 77, 97
FatI	CATG	1 cut(s)	95
FauNDI	CATATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	99
HinfI	GANTC	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	338, 354
Hpy8I	GTNNAC	2 cut(s)	338, 354
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	6 cut(s)	103, 146, 184, 279, 300, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 206
HpyF3I	CTNAG	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	78
LpnPI	CCDG	7 cut(s)	74, 97, 124, 156, 225, 318, 331
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	2 cut(s)	90, 193
MabI	ACCWGGT	1 cut(s)	110
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	1 cut(s)	236
MseI	TTAA	4 cut(s)	14, 138, 204, 219
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	100, 206
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	99
NlaIV	GGNNCC	2 cut(s)	93, 160
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	93, 160
PspPI	GGNCC	2 cut(s)	159, 338
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SaqAI	TTAA	4 cut(s)	14, 138, 204, 219
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	2 cut(s)	159, 338
ScaI	AGTACT	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	356
SetI	ASST	3 cut(s)	116, 122, 235
SexAI	ACCWGGT	1 cut(s)	110
SfaNI	GCATC	2 cut(s)	90, 193
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	338
Sse9I	AATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	95
TasI	AATT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	4 cut(s)	14, 138, 204, 219
Tru9I	TTAA	4 cut(s)	14, 138, 204, 219
TscAI	CASTG	2 cut(s)	129, 319
TseI	GCWGC	1 cut(s)	127
TspRI	CASTG	2 cut(s)	129, 319
VneI	GTGCAC	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	338
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.