AT3G58830
ERF Family

haloacid dehalogenase (HAD) superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005815
Physical Location & Seq
Reverse (-)
21754960 .. 21756819
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58830.1

Sequence Viewer

Length: 1032 bp
ATGGCTGCCTCCACTACTTCCTACTACCCAATCCCCAAAAGCTTCCTTCTTTCTCCTCCTCGTCACAAACGAAACCCTAATCTCATCTCCTGCTCCACCAAACCCATTTGCTCTCCTCCTCCTCCTTCGTCTTCTTCTTCGTCTCCTCTGCAAACGACGACAACCCATCGAAGCCAAAAGCAGAATCTGCGTCTACCCACGTTTGAAGATTCGTTTCTTCTTTACCAATTTAGCTCTCCCACCGAAGACCCAGGATTCTCTAACCGGATCCCGGAACAATTCGACGGAGAGCCACGCGAATTGGTGTTGCCGAGAGTAGAAGACAACAACAAAGGGTTGGCAATTTCGTCGAACATGTGGTGGGCAGATCTGAAAGCGGCTCTTGGGCAACGAATCAATATTGAGGGTATCGTTTCTTCGGTCTCCGTTGTTGTTAAAGATCGTCAATTTGTTCTTCCGCATGTTTCTGTGAAAGATTTAAGATACATTGATTGGGAAGTGCTGAAGAGAAAGGGCTTCAAAGGTGTAGTGTTTGATAAAGATAACACTCTTACGGCTCCTTATTCTCTAGCGATTTGGCCACCATTACGTCCTTCCATTGAGCGGTGTAAAGCCGTTTTTGGCCATGACATCGCCGTGTTTAGCAATTCCGCTGGGCTCACGGAATACGATCATGATGATTCGAAAGCTAAAGCATTGGAGGCTGAAATAGGAATTAGAGTGTTGAGGCATAGAGTGAAGAAGCCTGCAGGAACTGCTGAAGAAGTTGAGAAACACTTTGGTTGCACATCTTCAGAGCTAATCATGGTGGGTGATCGACCTTTCACAGATATCGTTTACGGGAACAGAAACGGATTTCTAACCGTATTAACCGAGCCTTTGAGTCGAGCTGAGGAGCCTTTCATTGTTAGACAGGTGAGGAGATTAGAGTTGGCCTTGTTGAAACGTTGGTTGAGAAAAGGTTTGAAGCCTGTGGATCATAGTTTGGTATCAGATATAACACAGTTTGTTAAAGTTCCATCAGATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 map00564 map01100
Pfam Domains
Protein Families
PGP_phosphatase

Protein Analysis

343

Amino Acids

38.55

Weight (kDa)

9.15

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGP_phosphatase PF09419 135 - 294 8.6e-51 Mitochondrial PGP phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 604
AccI GTMKAC 1 cut(s) 193
AccII CGCG 1 cut(s) 297
AciI CCGC 4 cut(s) 377, 458, 604, 651
AclI AACGTT 1 cut(s) 946
AclWI GGATC 3 cut(s) 262, 275, 984
AcoI YGGCCR 2 cut(s) 578, 622
AcuI CTGAAG 3 cut(s) 524, 777, 780
AfiI CCNNNNNNNGG 2 cut(s) 271, 603
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 4 cut(s) 206, 520, 943, 967
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 5 cut(s) 42, 234, 689, 799, 890
AluI AGCT 5 cut(s) 42, 234, 689, 799, 890
Alw26I GTCTC 2 cut(s) 147, 427
AlwI GGATC 3 cut(s) 262, 275, 984
AlwNI CAGNNNCTG 2 cut(s) 187, 755
AoxI GGCC 3 cut(s) 578, 622, 933
ApeKI GCWGC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 824, 928
AsuII TTCGAA 1 cut(s) 683
BalI TGGCCA 2 cut(s) 580, 624
BamHI GGATCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 660
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
BbsI GAAGAC 3 cut(s) 123, 252, 327
BbvCI CCTCAGC 1 cut(s) 891
BccI CCATC 2 cut(s) 174, 1027
BceAI ACGGC 3 cut(s) 570, 599, 620
BcgI CGANNNNNNTGC 2 cut(s) 330, 364
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 147, 427
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 1 cut(s) 747
BglII AGATCT 1 cut(s) 367
BisI GCNGC 2 cut(s) 6, 378
BlsI GCNGC 2 cut(s) 7, 379
Bme1390I CCNGG 2 cut(s) 252, 272
BmiI GGNNCC 3 cut(s) 269, 558, 897
BmrFI CCNGG 2 cut(s) 252, 272
BpiI GAAGAC 3 cut(s) 123, 252, 327
Bpu10I CCTNAGC 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 683
BpuMI CCSGG 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 603
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 271, 603
BseMII CTCAG 1 cut(s) 882
BseRI GAGGAG 8 cut(s) 45, 48, 105, 108, 111, 135, 908, 934
BseYI CCCAGC 1 cut(s) 653
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 3 cut(s) 580, 624, 935
BsiSI CCGG 2 cut(s) 265, 272
BslI CCNNNNNNNGG 2 cut(s) 271, 603
BsmAI GTCTC 2 cut(s) 147, 427
BsmBI CGTCTC 1 cut(s) 147
BsnI GGCC 3 cut(s) 580, 624, 935
Bso31I GGTCTC 1 cut(s) 427
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 1 cut(s) 660
Bsp143I GATC 6 cut(s) 267, 367, 439, 670, 814, 976
BspACI CCGC 4 cut(s) 377, 458, 604, 651
BspANI GGCC 3 cut(s) 580, 624, 935
BspCNI CTCAG 1 cut(s) 883
BspFNI CGCG 1 cut(s) 297
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 3 cut(s) 269, 558, 897
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 3 cut(s) 262, 275, 984
BspT104I TTCGAA 1 cut(s) 683
BspTNI GGTCTC 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 604
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 6 cut(s) 267, 367, 439, 670, 814, 976
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 865, 1005
Bst6I CTCTTC 1 cut(s) 500
BstAPI GCANNNNNTGC 2 cut(s) 187, 755
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 1 cut(s) 891
BstFNI CGCG 1 cut(s) 297
BstKTI GATC 6 cut(s) 270, 370, 442, 673, 817, 979
BstMAI GTCTC 2 cut(s) 147, 427
BstMBI GATC 6 cut(s) 267, 367, 439, 670, 814, 976
BstMWI GCNNNNNNNGC 3 cut(s) 187, 701, 755
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 2 cut(s) 358, 464
BstSCI CCNGG 2 cut(s) 250, 270
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 1 cut(s) 297
BstV2I GAAGAC 3 cut(s) 123, 252, 327
BstX2I RGATCY 2 cut(s) 267, 367
BstYI RGATCY 2 cut(s) 267, 367
BsuRI GGCC 3 cut(s) 580, 624, 935
BtgZI GCGATG 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 747
CaiI CAGNNNCTG 2 cut(s) 187, 755
CciI TCATGA 1 cut(s) 673
CseI GACGC 1 cut(s) 179
CspCI CAANNNNNGTGG 2 cut(s) 282, 317
CviAII CATG 5 cut(s) 355, 461, 626, 674, 805
DdeI CTNAG 1 cut(s) 891
DpnI GATC 6 cut(s) 269, 369, 441, 672, 816, 978
DpnII GATC 6 cut(s) 267, 367, 439, 670, 814, 976
EaeI YGGCCR 2 cut(s) 578, 622
Eam1104I CTCTTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 500
Eco24I GRGCYC 1 cut(s) 660
Eco31I GGTCTC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 832
Eco57I CTGAAG 3 cut(s) 524, 777, 780
EcoRII CCWGG 1 cut(s) 250
EcoRV GATATC 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 660
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 5 cut(s) 358, 464, 629, 677, 808
FaiI YATR 8 cut(s) 356, 462, 627, 675, 732, 806, 981, 998
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FatI CATG 5 cut(s) 354, 460, 625, 673, 804
FblI GTMKAC 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 6, 378
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 2 cut(s) 6, 378
FspBI CTAG 1 cut(s) 569
GluI GCNGC 2 cut(s) 6, 378
GsaI CCCAGC 1 cut(s) 657
HaeIII GGCC 3 cut(s) 580, 624, 935
HapII CCGG 2 cut(s) 265, 272
HgaI GACGC 1 cut(s) 179
Hin1II CATG 5 cut(s) 358, 464, 629, 677, 808
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 6 cut(s) 184, 209, 255, 393, 680, 883
HpaII CCGG 2 cut(s) 265, 272
HphI GGTGA 2 cut(s) 824, 928
Hpy166II GTNNAC 2 cut(s) 194, 838
Hpy188I TCNGA 4 cut(s) 372, 796, 994, 1024
Hpy188III TCNNGA 1 cut(s) 674
Hpy8I GTNNAC 2 cut(s) 194, 838
Hpy99I CGWCG 3 cut(s) 160, 287, 352
HpyAV CCTTC 3 cut(s) 56, 135, 603
HpyCH4III ACNGT 2 cut(s) 865, 1005
HpyCH4IV ACGT 3 cut(s) 200, 589, 946
HpyCH4V TGCA 3 cut(s) 151, 749, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 701, 755
HpyF3I CTNAG 1 cut(s) 891
HpySE526I ACGT 3 cut(s) 200, 589, 946
Hsp92II CATG 5 cut(s) 358, 464, 629, 677, 808
Kzo9I GATC 6 cut(s) 267, 367, 439, 670, 814, 976
LmnI GCTCC 3 cut(s) 98, 562, 895
MaeI CTAG 1 cut(s) 569
MaeII ACGT 3 cut(s) 200, 589, 946
MaeIII GTNAC 1 cut(s) 62
MalI GATC 6 cut(s) 269, 369, 441, 672, 816, 978
MbiI CCGCTC 1 cut(s) 604
MboI GATC 6 cut(s) 267, 367, 439, 670, 814, 976
MflI RGATCY 2 cut(s) 267, 367
MhlI GDGCHC 1 cut(s) 660
MlsI TGGCCA 2 cut(s) 580, 624
MluCI AATT 7 cut(s) 227, 278, 299, 342, 446, 646, 714
MluNI TGGCCA 2 cut(s) 580, 624
MlyI GAGTC 1 cut(s) 892
Mox20I TGGCCA 2 cut(s) 580, 624
MscI TGGCCA 2 cut(s) 580, 624
MseI TTAA 4 cut(s) 435, 479, 869, 1011
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 2 cut(s) 580, 624
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 2 cut(s) 265, 272
MspR9I CCNGG 2 cut(s) 252, 272
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 187, 701, 755
NciI CCSGG 1 cut(s) 272
NdeII GATC 6 cut(s) 267, 367, 439, 670, 814, 976
NlaIII CATG 5 cut(s) 358, 464, 629, 677, 808
NlaIV GGNNCC 3 cut(s) 269, 558, 897
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 2 cut(s) 358, 464
NspV TTCGAA 1 cut(s) 683
PagI TCATGA 1 cut(s) 673
PciI ACATGT 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PfeI GAWTC 5 cut(s) 184, 209, 255, 393, 680
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 2 cut(s) 7, 379
PleI GAGTC 1 cut(s) 891
PpsI GAGTC 1 cut(s) 891
PscI ACATGT 1 cut(s) 354
Psp1406I AACGTT 1 cut(s) 946
Psp6I CCWGG 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 653
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 269, 558, 897
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 2 cut(s) 187, 755
PsuI RGATCY 2 cut(s) 267, 367
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 4 cut(s) 435, 479, 869, 1011
SatI GCNGC 2 cut(s) 6, 378
Sau3AI GATC 6 cut(s) 267, 367, 439, 670, 814, 976
SbfI CCTGCAGG 1 cut(s) 751
SchI GAGTC 1 cut(s) 892
ScrFI CCNGG 2 cut(s) 252, 272
SdaI CCTGCAGG 1 cut(s) 751
SduI GDGCHC 1 cut(s) 660
SfcI CTRYAG 1 cut(s) 747
SfuI TTCGAA 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 635
Sse8387I CCTGCAGG 1 cut(s) 751
Sse9I AATT 7 cut(s) 227, 278, 299, 342, 446, 646, 714
SsiI CCGC 4 cut(s) 377, 458, 604, 651
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 2 cut(s) 250, 270
TaaI ACNGT 2 cut(s) 865, 1005
TaiI ACGT 3 cut(s) 203, 592, 949
TaqI TCGA 6 cut(s) 169, 282, 350, 683, 817, 886
TaqII GACCGA 1 cut(s) 409
TasI AATT 7 cut(s) 227, 278, 299, 342, 446, 646, 714
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 5 cut(s) 184, 209, 255, 393, 680
Tru1I TTAA 4 cut(s) 435, 479, 869, 1011
Tru9I TTAA 4 cut(s) 435, 479, 869, 1011
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 892
TspGWI ACGGA 4 cut(s) 300, 415, 677, 867
XceI RCATGY 2 cut(s) 358, 464
XmiI GTMKAC 1 cut(s) 193
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.