Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005815

Physical Location & Seq

Genomic Coordinates Reverse (-)

66122155 .. 66124417

Gene Structure 2263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020543

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAGTCAACCTCATCACCTCCGCTGCCCAAATGCCCTTACGCTCTCCCCAACCCTTCTCATCACTTCCCCCACCACCCCCACCACCCTTCCAAAAACCCTAACACCCTCTCCCTTCCCCAAAAGCCCCAAGCCCACTTCACCGCCTACTGTGCCCTCTCCATATCCCACACCAACAGTTGCAGCAGAGACCACCCAATAAACCAGAACCACAAACGCAGCCACCGGAGCACCGATTCCGACCCATATCACTACGACGCACTCTTCCTCCAATTCAACTCCTCCGGCGACACCAGCACCAGCAACGACGAAGGCCCAGAAAGCCCATTTGAAGATCAAAGCGAAGTTCACAGGGGAGTTTCGTCGAACATGTGGTGGGCAGACTTGAAAGCCGCATTGGGGCAGAGACTCAACTTTGGGGCCATAGTGTTTTCGGCTAGGGTGCTCGCCAAAGACCAGCACTTGGCTCTGCCTCACGTTTCGGTGCCTGATATAAGGCACATTGATTGGGTTGAGCTTCACAGGAGGGGTTTCAAGGGCGTTGTGTTTGATAAGGACAACACTCTCACTGTGCCTTACTCTTTGACGCTTTGGGGTCCTCTTGGGTCGTCATTGGAGCAATGTAAATCAGTTTTCGGGCCAGATATTGCGGTTTTCAGTAACTCCGCTGGGCTGAATGAATATGACCATGATGGTTCGAAAGCTAGGGAGCTTGAAGGGGCTATTGGAATTAAAGTCATAAGGCATAGATTGAAGAAACCGGCTGGGACAGCTGAAGAGATCGAGAAGCATTTTGGTTGTAAGTCGTCGCATCTTATTATGGTGGGTGATCGACCCTTGACTGATATAGTATATGGGAATCAAAATGGCTTTCTAACTATTTTAACTGGACCTTTGAGTCTTGCTGAGGAGCCATTCATTGTTAGGCAGGTGAGGAAACTAGAAACAGCCCTTGTGAATAGTTGGTCTAGGAAGGGGTTAAAACCCATGAGTCATAGGTTGTTGCCAGATGGCATGCAGTGTGTGAAACATCCACCACCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

PGP_phosphatase

Protein Analysis

349

Amino Acids

38.71

Weight (kDa)

8.19

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGP_phosphatase	PF09419	146 - 298	3.7e-42	Mitochondrial PGP phosphatase
Hydrolase_like	PF13242	254 - 296	3.5e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58830 AT3G58830 AT3G58830
fragaria_vesca	FvH4_6g38130 FvH4_6g38130 FvH4_6g38130
malus_domestica	MD09G1152800.v1.1 MD17G1140200.v1.1
prunus_persica	Prupe.3G171400_v2.0.a1
pyrus_communis	pycom09g07240 pycom17g13330
rosa_chinensis	RchiOBHm_Chr2g0151351
rosa_laevigata	RLG00000020543
rosa_multiflora	Rmu_sc0002516.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096520 Rroxscaffold_2G00096600
rosa_rugosa	Rorug02G0425400 Rorug02G0425400 Rorug02G0425500
rosa_samantha	Rh2AG486300 Rh2AG486600 Rh2BG498300 Rh2BG498800 Rh2CG472500 Rh2DG509100 Rh2DG509700
rosa_wichuraiana	Rw2G039840 Rw2G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	919
AasI	GACNNNNNNGTC	1 cut(s)	897
Acc36I	ACCTGC	1 cut(s)	919
AccB1I	GGYRCC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	463
AciI	CCGC	5 cut(s)	23, 144, 393, 650, 666
AcuI	CTGAAG	1 cut(s)	795
AfiI	CCNNNNNNNGG	2 cut(s)	399, 463
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	6 cut(s)	277, 332, 388, 535, 716, 754
AjuI	GAANNNNNNNTTGG	4 cut(s)	380, 412, 708, 740
AluBI	AGCT	4 cut(s)	517, 704, 712, 773
AluI	AGCT	4 cut(s)	517, 704, 712, 773
Alw21I	GWGCWC	2 cut(s)	233, 447
Alw26I	GTCTC	2 cut(s)	183, 400
AoxI	GGCC	3 cut(s)	313, 420, 638
ApeKI	GCWGC	3 cut(s)	25, 183, 219
AspS9I	GGNCC	5 cut(s)	314, 420, 596, 638, 890
AsuHPI	GGTGA	4 cut(s)	9, 133, 839, 943
AsuII	TTCGAA	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	596, 890
BaeGI	GKGCMC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	484
Bbv12I	GWGCWC	2 cut(s)	233, 447
BbvCI	CCTCAGC	1 cut(s)	906
BbvI	GCAGC	3 cut(s)	12, 195, 231
BccI	CCATC	2 cut(s)	686, 1004
BcoDI	GTCTC	2 cut(s)	183, 400
BfaI	CTAG	4 cut(s)	438, 705, 941, 969
BfuAI	ACCTGC	1 cut(s)	919
BisI	GCNGC	4 cut(s)	26, 184, 220, 393
BlsI	GCNGC	4 cut(s)	27, 185, 221, 394
Bme18I	GGWCC	2 cut(s)	596, 890
BmgT120I	GGNCC	5 cut(s)	314, 420, 596, 638, 890
BmiI	GGNNCC	4 cut(s)	421, 486, 597, 912
BmsI	GCATC	1 cut(s)	820
Bpu10I	CCTNAGC	1 cut(s)	906
Bpu14I	TTCGAA	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 252, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 463
Bse118I	RCCGGY	1 cut(s)	760
Bse1I	ACTGG	1 cut(s)	892
Bse3DI	GCAATG	1 cut(s)	626
BseGI	GGATG	1 cut(s)	1030
BseLI	CCNNNNNNNGG	2 cut(s)	399, 463
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	1 cut(s)	892
BseRI	GAGGAG	2 cut(s)	271, 923
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	12, 195, 231
BseYI	CCCAGC	2 cut(s)	668, 764
BshFI	GGCC	3 cut(s)	315, 422, 640
BshNI	GGYRCC	1 cut(s)	484
BsiHKAI	GWGCWC	2 cut(s)	233, 447
BsiSI	CCGG	3 cut(s)	226, 285, 761
BslFI	GGGAC	1 cut(s)	781
BslI	CCNNNNNNNGG	2 cut(s)	399, 463
BsmAI	GTCTC	2 cut(s)	183, 400
BsmFI	GGGAC	1 cut(s)	781
BsnI	GGCC	3 cut(s)	315, 422, 640
Bso31I	GGTCTC	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	698
Bsp1286I	GDGCHC	3 cut(s)	157, 233, 447
Bsp143I	GATC	3 cut(s)	334, 780, 829
BspACI	CCGC	5 cut(s)	23, 144, 393, 650, 666
BspANI	GGCC	3 cut(s)	315, 422, 640
BspCNI	CTCAG	1 cut(s)	898
BspLI	GGNNCC	4 cut(s)	421, 486, 597, 912
BspMI	ACCTGC	1 cut(s)	919
BspT104I	TTCGAA	1 cut(s)	698
BspT107I	GGYRCC	1 cut(s)	484
BspTNI	GGTCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	626
BsrFI	RCCGGY	1 cut(s)	760
BsrI	ACTGG	1 cut(s)	892
BssAI	RCCGGY	1 cut(s)	760
BssMI	GATC	3 cut(s)	334, 780, 829
Bst4CI	ACNGT	3 cut(s)	152, 179, 571
Bst6I	CTCTTC	2 cut(s)	269, 771
BstBI	TTCGAA	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	447, 1016
BstDEI	CTNAG	1 cut(s)	906
BstF5I	GGATG	1 cut(s)	1030
BstKTI	GATC	3 cut(s)	337, 783, 832
BstMAI	GTCTC	2 cut(s)	183, 400
BstMBI	GATC	3 cut(s)	334, 780, 829
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 228, 294, 321, 770
BstNSI	RCATGY	2 cut(s)	373, 1018
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	3 cut(s)	12, 195, 231
BsuRI	GGCC	3 cut(s)	315, 422, 640
BtsCI	GGATG	1 cut(s)	1030
BtsI	GCAGTG	1 cut(s)	1025
BtsIMutI	CAGTG	2 cut(s)	567, 1025
BveI	ACCTGC	1 cut(s)	919
Cac8I	GCNNGC	2 cut(s)	447, 1016
Cfr10I	RCCGGY	1 cut(s)	760
Cfr13I	GGNCC	5 cut(s)	314, 420, 596, 638, 890
CseI	GACGC	2 cut(s)	266, 595
CviAII	CATG	4 cut(s)	370, 689, 988, 1015
DdeI	CTNAG	1 cut(s)	906
DpnI	GATC	3 cut(s)	336, 782, 831
DpnII	GATC	3 cut(s)	334, 780, 829
DrdI	GACNNNNNNGTC	1 cut(s)	897
DseDI	GACNNNNNNGTC	1 cut(s)	897
Eam1104I	CTCTTC	2 cut(s)	269, 771
EarI	CTCTTC	2 cut(s)	269, 771
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	596, 890
Eco57I	CTGAAG	1 cut(s)	795
EcoO109I	RGGNCCY	1 cut(s)	596
FaeI	CATG	4 cut(s)	373, 692, 991, 1018
FaqI	GGGAC	1 cut(s)	781
FatI	CATG	4 cut(s)	369, 688, 987, 1014
Fnu4HI	GCNGC	4 cut(s)	26, 184, 220, 393
FokI	GGATG	1 cut(s)	1017
Fsp4HI	GCNGC	4 cut(s)	26, 184, 220, 393
FspBI	CTAG	4 cut(s)	438, 705, 941, 969
GluI	GCNGC	4 cut(s)	26, 184, 220, 393
GsaI	CCCAGC	2 cut(s)	672, 768
HaeIII	GGCC	3 cut(s)	315, 422, 640
HapII	CCGG	3 cut(s)	226, 285, 761
HgaI	GACGC	2 cut(s)	266, 595
Hin1II	CATG	4 cut(s)	373, 692, 991, 1018
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	5 cut(s)	236, 408, 859, 898, 991
HpaII	CCGG	3 cut(s)	226, 285, 761
HphI	GGTGA	4 cut(s)	9, 133, 839, 943
Hpy166II	GTNNAC	2 cut(s)	9, 349
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	784
Hpy8I	GTNNAC	2 cut(s)	9, 349
Hpy99I	CGWCG	4 cut(s)	260, 311, 367, 811
HpyAV	CCTTC	6 cut(s)	66, 99, 125, 305, 710, 967
HpyCH4III	ACNGT	3 cut(s)	152, 179, 571
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	3 cut(s)	4, 183, 1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 228, 294, 321, 770
HpyF3I	CTNAG	1 cut(s)	906
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	4 cut(s)	373, 692, 991, 1018
Kzo9I	GATC	3 cut(s)	334, 780, 829
LmnI	GCTCC	4 cut(s)	228, 616, 709, 910
Lsp1109I	GCAGC	3 cut(s)	12, 195, 231
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	4 cut(s)	438, 705, 941, 969
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	3 cut(s)	336, 782, 831
MboI	GATC	3 cut(s)	334, 780, 829
MboII	GAAGA	4 cut(s)	256, 344, 766, 788
MhlI	GDGCHC	3 cut(s)	157, 233, 447
MluCI	AATT	2 cut(s)	272, 729
MlyI	GAGTC	3 cut(s)	402, 907, 1000
MmeI	TCCRAC	1 cut(s)	264
MseI	TTAA	3 cut(s)	732, 884, 980
MspA1I	CMGCKG	3 cut(s)	25, 668, 773
MspI	CCGG	3 cut(s)	226, 285, 761
MwoI	GCNNNNNNNGC	5 cut(s)	152, 228, 294, 321, 770
NdeII	GATC	3 cut(s)	334, 780, 829
NlaIII	CATG	4 cut(s)	373, 692, 991, 1018
NlaIV	GGNNCC	4 cut(s)	421, 486, 597, 912
NspI	RCATGY	2 cut(s)	373, 1018
NspV	TTCGAA	1 cut(s)	698
PaeI	GCATGC	1 cut(s)	1018
PaqCI	CACCTGC	1 cut(s)	919
PciI	ACATGT	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	236, 859
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	4 cut(s)	27, 185, 221, 394
PleI	GAGTC	3 cut(s)	402, 906, 999
PpsI	GAGTC	3 cut(s)	402, 906, 999
PpuMI	RGGWCCY	1 cut(s)	596
PscI	ACATGT	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	596
PspFI	CCCAGC	2 cut(s)	668, 764
PspN4I	GGNNCC	4 cut(s)	421, 486, 597, 912
PspPI	GGNCC	5 cut(s)	314, 420, 596, 638, 890
PspPPI	RGGWCCY	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	773
SaqAI	TTAA	3 cut(s)	732, 884, 980
SatI	GCNGC	4 cut(s)	26, 184, 220, 393
Sau3AI	GATC	3 cut(s)	334, 780, 829
Sau96I	GGNCC	5 cut(s)	314, 420, 596, 638, 890
SchI	GAGTC	3 cut(s)	402, 907, 1000
SduI	GDGCHC	3 cut(s)	157, 233, 447
SfaNI	GCATC	1 cut(s)	820
SfuI	TTCGAA	1 cut(s)	698
SinI	GGWCC	2 cut(s)	596, 890
SphI	GCATGC	1 cut(s)	1018
Sse9I	AATT	2 cut(s)	272, 729
SsiI	CCGC	5 cut(s)	23, 144, 393, 650, 666
SspMI	CTAG	4 cut(s)	438, 705, 941, 969
TaaI	ACNGT	3 cut(s)	152, 179, 571
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	4 cut(s)	365, 698, 783, 832
TasI	AATT	2 cut(s)	272, 729
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	236, 859
Tru1I	TTAA	3 cut(s)	732, 884, 980
Tru9I	TTAA	3 cut(s)	732, 884, 980
TscAI	CASTG	2 cut(s)	574, 1025
TseI	GCWGC	3 cut(s)	25, 183, 219
TspDTI	ATGAA	2 cut(s)	693, 907
TspRI	CASTG	2 cut(s)	574, 1025
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	596, 890
XceI	RCATGY	2 cut(s)	373, 1018
XspI	CTAG	4 cut(s)	438, 705, 941, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.