Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005815

Physical Location & Seq

Genomic Coordinates Reverse (-)

70378314 .. 70389001

Gene Structure 10688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG498300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATGATGTAGGAATATGGGCTCTTGGACCAAATCATAAAATTCTATCGAGTATATGTGATATTTTTGCTTCAATGCAAAGGGGAGATACTTACGTTAGCTCCTTACCATGCAATGGAAAATCCGCTATAACAACTAGTGAGGGATTGAAGAAACCGGCTGGGACAGCAGAAGAGATCGAGAAGCATTTTGCTTGTAAGTCGTCGCATCTTATTATGGTGGGTGATCGACCCTTGACTGATATTGTCTATGGGAATCAAAATGGCTTTCTAACTATCTTAACTGGACCTTTGAGTCTTGCTGAGGAGCCATTCATTGTTAGGCAGGTGAGGAAACTAGAAACAGCCCTTCTGAATAGTTGGTCTAGGAAGGGGTTAAAACCCATGAGTCATAGGTTGTTGCCAGATGGCATGCAGTGTGTGAAACATCCACCACCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

PGP_phosphatase

Protein Analysis

147

Amino Acids

16.08

Weight (kDa)

8.38

Isoelectric Point (pI)

27.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGP_phosphatase	PF09419	50 - 97	1.4e-09	Mitochondrial PGP phosphatase
Hydrolase_like	PF13242	54 - 95	2.7e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58830 AT3G58830 AT3G58830
fragaria_vesca	FvH4_6g38130 FvH4_6g38130 FvH4_6g38130
malus_domestica	MD09G1152800.v1.1 MD17G1140200.v1.1
prunus_persica	Prupe.3G171400_v2.0.a1
pyrus_communis	pycom09g07240 pycom17g13330
rosa_chinensis	RchiOBHm_Chr2g0151351
rosa_laevigata	RLG00000020543
rosa_multiflora	Rmu_sc0002516.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096520 Rroxscaffold_2G00096600
rosa_rugosa	Rorug02G0425400 Rorug02G0425400 Rorug02G0425500
rosa_samantha	Rh2AG486300 Rh2AG486600 Rh2BG498300 Rh2BG498800 Rh2CG472500 Rh2DG509100 Rh2DG509700
rosa_wichuraiana	Rw2G039840 Rw2G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
AasI	GACNNNNNNGTC	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	116
AciI	CCGC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	75, 151
AhlI	ACTAGT	1 cut(s)	137
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	29, 287
AsuHPI	GGTGA	2 cut(s)	236, 340
AvaII	GGWCC	2 cut(s)	29, 287
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BanII	GRGCYC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	303
BccI	CCATC	1 cut(s)	401
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	3 cut(s)	138, 338, 366
BfuAI	ACCTGC	1 cut(s)	316
Bme18I	GGWCC	2 cut(s)	29, 287
BmgT120I	GGNCC	2 cut(s)	29, 287
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	217
Bpu10I	CCTNAGC	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	10, 427
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	320
BseYI	CCCAGC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	177, 226
BspACI	CCGC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	309
BspMI	ACCTGC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	157
BssMI	GATC	2 cut(s)	177, 226
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	10, 427
BstKTI	GATC	2 cut(s)	180, 229
BstMBI	GATC	2 cut(s)	177, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	10, 427
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	422
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	413
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	29, 287
CviAII	CATG	3 cut(s)	111, 385, 412
CviJI	RGCY	6 cut(s)	23, 102, 161, 267, 310, 347
CviKI_1	RGCY	6 cut(s)	23, 102, 161, 267, 310, 347
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	179, 228
DpnII	GATC	2 cut(s)	177, 226
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	29, 287
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	3 cut(s)	114, 388, 415
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	110, 384, 411
FokI	GGATG	2 cut(s)	17, 414
FriOI	GRGCYC	1 cut(s)	25
FspBI	CTAG	3 cut(s)	138, 338, 366
GsaI	CCCAGC	1 cut(s)	165
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	3 cut(s)	114, 388, 415
HinfI	GANTC	3 cut(s)	256, 295, 388
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	236, 340
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	359, 364
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	79, 114, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	114, 388, 415
Kzo9I	GATC	2 cut(s)	177, 226
LmnI	GCTCC	2 cut(s)	107, 307
LpnPI	CCDG	5 cut(s)	147, 171, 270, 311, 417
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	3 cut(s)	138, 338, 366
MaeII	ACGT	1 cut(s)	96
MalI	GATC	2 cut(s)	179, 228
MboI	GATC	2 cut(s)	177, 226
MboII	GAAGA	2 cut(s)	163, 185
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	304, 397
MnlI	CCTC	3 cut(s)	136, 298, 324
MseI	TTAA	2 cut(s)	281, 377
MspI	CCGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	2 cut(s)	177, 226
NlaIII	CATG	3 cut(s)	114, 388, 415
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	415
PaeI	GCATGC	1 cut(s)	415
PaqCI	CACCTGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	116
PleI	GAGTC	2 cut(s)	303, 396
PpsI	GAGTC	2 cut(s)	303, 396
PspFI	CCCAGC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	29, 287
SaqAI	TTAA	2 cut(s)	281, 377
Sau3AI	GATC	2 cut(s)	177, 226
Sau96I	GGNCC	2 cut(s)	29, 287
SchI	GAGTC	2 cut(s)	304, 397
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	6 cut(s)	99, 104, 292, 330, 398, 439
SfaNI	GCATC	1 cut(s)	217
SinI	GGWCC	2 cut(s)	29, 287
SpeI	ACTAGT	1 cut(s)	137
SphI	GCATGC	1 cut(s)	415
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	3 cut(s)	138, 338, 366
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	3 cut(s)	50, 180, 229
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	281, 377
Tru9I	TTAA	2 cut(s)	281, 377
TscAI	CASTG	1 cut(s)	422
TspDTI	ATGAA	1 cut(s)	304
TspRI	CASTG	1 cut(s)	422
Van91I	CCANNNNNTGG	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	29, 287
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	415
XspI	CTAG	3 cut(s)	138, 338, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.