Rorug02G0425500

Mitochondrial PGP phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005815
Physical Location & Seq
Forward (+)
54666087 .. 54666834
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0425500.1

Sequence Viewer

Length: 552 bp
ATGCATGTGGCTGCTGTTGTTAAAGAAAATGAACTGGAATGGTTTGGAATCATTGCTTGGCAGCTTTGGCATAAGAGAAATAGTAGAGTGCATGGTACATGTGCGCTGGGAGCAGAGAACTTAATTGAGAAAGCAAGTTGTTGGTGGGAGGGCTTGGATATAGGTGTCAAAGATGAATTAATGGGTGAGGCCATGCATGGGAGGAGTGTGGACGTGCATGGAGTGATGGGTGGGGCTAGTGAAAGGAGGCAACAGTGGGCCAAGCCTATGAGAGGCTTTACGTGTCTGGAAATTGAAGGTGATGCCCAAAATGTCTTCACGGCGTTAAACTCTAACCAAGATGACCTCAGCTCGGATGGAGTTCTCGTTGATGAAGCAAAAGTACTTTTGAGTCAGTTTCAGTCCTGTAGTTGGGGTTATATCCCTAGAGAGTGTAATAAGGCTGCCCACTATGTGGCAAGAACCTCGCTTTCTCTACATTTCCCTACTTATTGGTGGAGGATGGTGCCAGAGTGGCTTAATTCAATTTTAGTTCAAGAGTCAAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 map00564 map01100
Pfam Domains
Protein Families
PGP_phosphatase

Protein Analysis

183

Amino Acids

20.71

Weight (kDa)

5.46

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 91 - 154 1.1e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 505
AccB7I CCANNNNNTGG 1 cut(s) 454
AdeI CACNNNGTG 1 cut(s) 454
AfaI GTAC 2 cut(s) 97, 384
AfiI CCNNNNNNNGG 5 cut(s) 198, 272, 352, 411, 454
AflIII ACRYGT 2 cut(s) 98, 281
AgsI TTSAA 3 cut(s) 296, 525, 536
AjiI CACGTC 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AluBI AGCT 2 cut(s) 64, 351
AluI AGCT 2 cut(s) 64, 351
AoxI GGCC 2 cut(s) 189, 258
ApeKI GCWGC 3 cut(s) 11, 61, 443
AseI ATTAAT 1 cut(s) 179
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 197, 311
BanI GGYRCC 1 cut(s) 505
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbsI GAAGAC 1 cut(s) 307
BbvCI CCTCAGC 1 cut(s) 347
BbvI GCAGC 2 cut(s) 73, 430
BccI CCATC 3 cut(s) 220, 350, 496
BceAI ACGGC 1 cut(s) 336
BcgI CGANNNNNNTGC 2 cut(s) 447, 481
BfaI CTAG 2 cut(s) 237, 426
BfmI CTRYAG 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 514
BisI GCNGC 3 cut(s) 12, 62, 444
BlsI GCNGC 3 cut(s) 13, 63, 445
BmcAI AGTACT 1 cut(s) 384
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 507
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 347
BsaAI YACGTR 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 5 cut(s) 198, 272, 352, 411, 454
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 51
BseGI GGATG 2 cut(s) 361, 507
BseLI CCNNNNNNNGG 5 cut(s) 198, 272, 352, 411, 454
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 361
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 73, 430
BseYI CCCAGC 1 cut(s) 106
BshFI GGCC 2 cut(s) 191, 260
BshNI GGYRCC 1 cut(s) 505
BslI CCNNNNNNNGG 5 cut(s) 198, 272, 352, 411, 454
BsnI GGCC 2 cut(s) 191, 260
BspANI GGCC 2 cut(s) 191, 260
BspCNI CTCAG 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 505
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 347
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 361, 507
BstHHI GCGC 1 cut(s) 106
BstMWI GCNNNNNNNGC 3 cut(s) 67, 110, 514
BstNSI RCATGY 2 cut(s) 8, 102
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 73, 430
BstV2I GAAGAC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 191, 260
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 361, 507
BtsIMutI CAGTG 1 cut(s) 260
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 2 cut(s) 96, 383
CviAII CATG 6 cut(s) 5, 92, 99, 193, 197, 218
CviQI GTAC 2 cut(s) 96, 383
DdeI CTNAG 1 cut(s) 347
DraIII CACNNNGTG 1 cut(s) 454
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoT22I ATGCAT 2 cut(s) 6, 198
FaeI CATG 6 cut(s) 8, 95, 102, 196, 200, 221
FatI CATG 6 cut(s) 4, 91, 98, 192, 196, 217
Fnu4HI GCNGC 3 cut(s) 12, 62, 444
FokI GGATG 2 cut(s) 368, 514
Fsp4HI GCNGC 3 cut(s) 12, 62, 444
FspBI CTAG 2 cut(s) 237, 426
GlaI GCGC 1 cut(s) 105
GluI GCNGC 3 cut(s) 12, 62, 444
GsaI CCCAGC 1 cut(s) 110
HaeIII GGCC 2 cut(s) 191, 260
HhaI GCGC 1 cut(s) 106
Hin1II CATG 6 cut(s) 8, 95, 102, 196, 200, 221
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 3 cut(s) 48, 391, 539
HphI GGTGA 2 cut(s) 197, 311
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 2 cut(s) 287, 536
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 2 cut(s) 213, 281
HpyCH4V TGCA 4 cut(s) 4, 91, 196, 217
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 110, 514
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 2 cut(s) 213, 281
Hsp92II CATG 6 cut(s) 8, 95, 102, 196, 200, 221
HspAI GCGC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 20, 92, 272, 418, 522
Lsp1109I GCAGC 2 cut(s) 73, 430
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 237, 426
MaeII ACGT 2 cut(s) 213, 281
MboII GAAGA 1 cut(s) 307
MluCI AATT 5 cut(s) 123, 176, 291, 520, 525
MlyI GAGTC 2 cut(s) 400, 548
MnlI CCTC 8 cut(s) 142, 181, 195, 240, 266, 356, 475, 492
Mph1103I ATGCAT 2 cut(s) 6, 198
MseI TTAA 5 cut(s) 21, 122, 179, 326, 519
MwoI GCNNNNNNNGC 3 cut(s) 67, 110, 514
NlaIII CATG 6 cut(s) 8, 95, 102, 196, 200, 221
NlaIV GGNNCC 1 cut(s) 507
NsiI ATGCAT 2 cut(s) 6, 198
NspI RCATGY 2 cut(s) 8, 102
PciI ACATGT 1 cut(s) 98
PfeI GAWTC 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 454
PkrI GCNGC 3 cut(s) 13, 63, 445
PleI GAGTC 2 cut(s) 399, 547
PpsI GAGTC 2 cut(s) 399, 547
Ppu21I YACGTR 1 cut(s) 282
PscI ACATGT 1 cut(s) 98
PshBI ATTAAT 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 1 cut(s) 258
RsaI GTAC 2 cut(s) 97, 384
RsaNI GTAC 2 cut(s) 96, 383
SaqAI TTAA 5 cut(s) 21, 122, 179, 326, 519
SatI GCNGC 3 cut(s) 12, 62, 444
Sau96I GGNCC 1 cut(s) 258
ScaI AGTACT 1 cut(s) 384
SchI GAGTC 2 cut(s) 400, 548
SetI ASST 8 cut(s) 66, 166, 216, 284, 301, 348, 353, 467
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 406
Sse9I AATT 5 cut(s) 123, 176, 291, 520, 525
SspMI CTAG 2 cut(s) 237, 426
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 2 cut(s) 216, 284
TasI AATT 5 cut(s) 123, 176, 291, 520, 525
TatI WGTACW 1 cut(s) 382
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 5 cut(s) 21, 122, 179, 326, 519
Tru9I TTAA 5 cut(s) 21, 122, 179, 326, 519
TscAI CASTG 1 cut(s) 260
TseI GCWGC 3 cut(s) 11, 61, 443
TspDTI ATGAA 3 cut(s) 45, 189, 387
TspRI CASTG 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 454
VspI ATTAAT 1 cut(s) 179
XagI CCTNNNNNAGG 1 cut(s) 270
XceI RCATGY 2 cut(s) 8, 102
XspI CTAG 2 cut(s) 237, 426
ZrmI AGTACT 1 cut(s) 384
Zsp2I ATGCAT 2 cut(s) 6, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.