Rw2G040220

Mitochondrial PGP phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005815
Physical Location & Seq
Forward (+)
65702735 .. 65707416
4682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G040220.1

Sequence Viewer

Length: 399 bp
ATGATTGCGGTCTTCAGTAACTCCGCTGGGCTGAATGAATATGACCATGATGGTTTGAAAGCTAGGGAGCTTGAAGGGGCTCTTGGAATTAAAGTCATTAGGCATGGATTGAAGAAACCGGCTGGGACGTCAGCTGAGAAGCATTTTGGTTGTAAGTCGTCGCATCTTATTATGGTGGGTGATCGACCCTTGACTGATATTGTGTATGGGAATCAAAATGGCTTTCTAACTATCTTAACTGGACCTGTGAGTCTTGGTGAGGAGCCATTCATTGTTAGGCAGGTGAGGAAACTAGAAACAGCCCTTGTGAATAGTTGGTCTAGGAAGGGGTTAAAACCCATGAGTCATAGGTTGTTGCCAGATGGAATGCAGTGTGTGAAACATCCACCACCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 map00564 map01100
Pfam Domains
Protein Families
PGP_phosphatase

Protein Analysis

132

Amino Acids

14.44

Weight (kDa)

9.43

Isoelectric Point (pI)

16.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGP_phosphatase PF09419 2 - 83 2.5e-19 Mitochondrial PGP phosphatase
Hydrolase_like PF13242 44 - 80 1.5e-06 HAD-hyrolase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 271
AasI GACNNNNNNGTC 1 cut(s) 249
AatII GACGTC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 271
AciI CCGC 2 cut(s) 8, 24
AcyI GRCGYC 1 cut(s) 128
AgsI TTSAA 3 cut(s) 58, 74, 112
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AluBI AGCT 3 cut(s) 62, 70, 134
AluI AGCT 3 cut(s) 62, 70, 134
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 191, 269, 295
AvaII GGWCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 4
BccI CCATC 2 cut(s) 44, 356
BfaI CTAG 3 cut(s) 63, 293, 321
BfuAI ACCTGC 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 4
BsaHI GRCGYC 1 cut(s) 128
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 275
BseYI CCCAGC 2 cut(s) 26, 122
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 2 cut(s) 8, 24
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 264
BspMI ACCTGC 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 118
BssMI GATC 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 4
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 377
BtsIMutI CAGTG 1 cut(s) 377
BveI ACCTGC 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 242
CviAII CATG 3 cut(s) 47, 104, 340
CviJI RGCY 9 cut(s) 31, 62, 70, 80, 122, 134, 222, 265, 302
CviKI_1 RGCY 9 cut(s) 31, 62, 70, 80, 122, 134, 222, 265, 302
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DrdI GACNNNNNNGTC 1 cut(s) 249
DseDI GACNNNNNNGTC 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 82
FaeI CATG 3 cut(s) 50, 107, 343
FaiI YATR 7 cut(s) 42, 48, 105, 173, 207, 341, 348
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 46, 103, 339
FokI GGATG 1 cut(s) 369
FriOI GRGCYC 1 cut(s) 82
FspBI CTAG 3 cut(s) 63, 293, 321
GsaI CCCAGC 2 cut(s) 30, 126
HapII CCGG 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 3 cut(s) 50, 107, 343
HinfI GANTC 3 cut(s) 211, 250, 343
HpaII CCGG 1 cut(s) 119
HphI GGTGA 3 cut(s) 191, 269, 295
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 68, 319
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 370
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 3 cut(s) 50, 107, 343
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 2 cut(s) 67, 262
LpnPI CCDG 7 cut(s) 12, 108, 132, 225, 258, 266, 372
LweI GCATC 1 cut(s) 172
MaeI CTAG 3 cut(s) 63, 293, 321
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 2 cut(s) 4, 124
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 1 cut(s) 87
MlyI GAGTC 2 cut(s) 259, 352
MnlI CCTC 2 cut(s) 253, 279
MseI TTAA 3 cut(s) 90, 236, 332
MspA1I CMGCKG 2 cut(s) 26, 134
MspI CCGG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 372
NdeII GATC 1 cut(s) 181
NlaIII CATG 3 cut(s) 50, 107, 343
NlaIV GGNNCC 1 cut(s) 264
PaqCI CACCTGC 1 cut(s) 271
PctI GAATGC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 211
PleI GAGTC 2 cut(s) 258, 351
PpsI GAGTC 2 cut(s) 258, 351
PspFI CCCAGC 2 cut(s) 26, 122
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 134
SaqAI TTAA 3 cut(s) 90, 236, 332
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 259, 352
SduI GDGCHC 1 cut(s) 82
SetI ASST 8 cut(s) 64, 72, 131, 136, 247, 285, 353, 394
SfaNI GCATC 1 cut(s) 172
SinI GGWCC 1 cut(s) 242
Sse9I AATT 1 cut(s) 87
SsiI CCGC 2 cut(s) 8, 24
SspMI CTAG 3 cut(s) 63, 293, 321
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 184
TasI AATT 1 cut(s) 87
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 3 cut(s) 90, 236, 332
Tru9I TTAA 3 cut(s) 90, 236, 332
TscAI CASTG 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 51, 259
TspRI CASTG 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 242
XspI CTAG 3 cut(s) 63, 293, 321
ZraI GACGTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.