Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005815

Physical Location & Seq

Genomic Coordinates Reverse (-)

70479620 .. 70482539

Gene Structure 2920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG498800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCAGTCAACCTCATCACCTCCGCTGCCCAAATGCCCTTACGCTCTCCCCAACCCTTCTCATCACTTCTTCCACCACCCCCACCACCCTTCCAAAAACCCTAACACCCTCTCCCTTCCCCAAAAGCCCCAAACCCACTTCACCGCCCACTGTGCCCTTTCCATATCCCACACCAACAGTTGCAGCAGAGACCACCCAGTAAACCAGAACCACAAACGCAGCCACCGGAGCACCGATTCCGATTCCGACCCATATCACTACGACGCACTCTTCCTCCAATTCAACTCCCCCGGCGACACCAGCACCAGCAACGACGAAGGCCCGGAAAGCCCATTTGAAGATCAAAGCGAAGTTCACAGGGGAGTTTCGTCGAACATGTGGTGGGCAGACTTGAAAGCCGCATTGGGGCAGAGACTGAACTTTGGGGCCATAGTGTTTTCGGCTAGGGTGCTCGCCAAAGACCAGCACTTGGCTCTGCCTCACGTTTCGGTGCCTGATATAAGGCACATTGATTGGGTTGAGCTTCACAGGAGGGGTTTCAAGGGCGTTGTGTTTGATAAGGACAACACTCTCACTGTGCCTTACTCTTTGACGCTTTGGGGTCCTCTTGGGTCGTCATTGGAGCAATGTAAATCAGTTTTCGGGCCAGATATTGCGGTCTTCAGTAACTCCGCTGGGCTGAATGAATATGACCATGATGGTTCGAAAGCTAGGGAGCTTGAAGGGGCTATCGGAATTAAAGTCATAAGGCATAGATTGAAGAAACCAGCTGGGACAGCTGAAGAGATCGAGAAGCATTTTGGTTGTAAGTCGTCGCATCTTATTATGGTGGGTGATCGACCCTTGACTGATATTGTCTATGGGAATCAAAATGGCTTTCTAACTATCTTAACTGGACCTTTGAGTCTTGCTGAGGAGCCATTCATTGTTAGGCAGGTTGGTTTTCTTTCATATACTGATTTTCTTTCATGCACTATTAGAGATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

PGP_phosphatase

Protein Analysis

329

Amino Acids

36.59

Weight (kDa)

6.5

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGP_phosphatase	PF09419	148 - 300	3.2e-42	Mitochondrial PGP phosphatase
Hydrolase_like	PF13242	256 - 298	3.2e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58830 AT3G58830 AT3G58830
fragaria_vesca	FvH4_6g38130 FvH4_6g38130 FvH4_6g38130
malus_domestica	MD09G1152800.v1.1 MD17G1140200.v1.1
prunus_persica	Prupe.3G171400_v2.0.a1
pyrus_communis	pycom09g07240 pycom17g13330
rosa_chinensis	RchiOBHm_Chr2g0151351
rosa_laevigata	RLG00000020543
rosa_multiflora	Rmu_sc0002516.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096520 Rroxscaffold_2G00096600
rosa_rugosa	Rorug02G0425400 Rorug02G0425400 Rorug02G0425500
rosa_samantha	Rh2AG486300 Rh2AG486600 Rh2BG498300 Rh2BG498800 Rh2CG472500 Rh2DG509100 Rh2DG509700
rosa_wichuraiana	Rw2G039840 Rw2G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	903
Acc36I	ACCTGC	1 cut(s)	925
AccB1I	GGYRCC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	469
AciI	CCGC	5 cut(s)	23, 144, 399, 656, 672
AcuI	CTGAAG	2 cut(s)	646, 801
AfiI	CCNNNNNNNGG	2 cut(s)	405, 469
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	6 cut(s)	283, 338, 394, 541, 722, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	5 cut(s)	523, 710, 718, 770, 779
AluI	AGCT	5 cut(s)	523, 710, 718, 770, 779
Alw21I	GWGCWC	2 cut(s)	233, 453
Alw26I	GTCTC	2 cut(s)	183, 406
AlwNI	CAGNNNCTG	1 cut(s)	415
AoxI	GGCC	3 cut(s)	319, 426, 644
ApeKI	GCWGC	3 cut(s)	25, 183, 219
AspS9I	GGNCC	5 cut(s)	320, 426, 602, 644, 896
AsuC2I	CCSGG	2 cut(s)	291, 323
AsuHPI	GGTGA	3 cut(s)	9, 133, 845
AsuII	TTCGAA	1 cut(s)	704
AvaII	GGWCC	2 cut(s)	602, 896
BaeGI	GKGCMC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	652
Bbv12I	GWGCWC	2 cut(s)	233, 453
BbvCI	CCTCAGC	1 cut(s)	912
BbvI	GCAGC	3 cut(s)	12, 195, 231
BccI	CCATC	1 cut(s)	692
BcnI	CCSGG	2 cut(s)	291, 323
BcoDI	GTCTC	2 cut(s)	183, 406
BfaI	CTAG	3 cut(s)	444, 711, 988
BfuAI	ACCTGC	1 cut(s)	925
BisI	GCNGC	4 cut(s)	26, 184, 220, 399
BlsI	GCNGC	4 cut(s)	27, 185, 221, 400
Bme1390I	CCNGG	2 cut(s)	291, 323
Bme18I	GGWCC	2 cut(s)	602, 896
BmgT120I	GGNCC	5 cut(s)	320, 426, 602, 644, 896
BmiI	GGNNCC	4 cut(s)	427, 492, 603, 918
BmrFI	CCNGG	2 cut(s)	291, 323
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	826
BmuI	ACTGGG	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	652
Bpu10I	CCTNAGC	1 cut(s)	912
Bpu14I	TTCGAA	1 cut(s)	704
BpuMI	CCSGG	2 cut(s)	291, 323
BsaI	GGTCTC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 258, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 469
Bse1I	ACTGG	2 cut(s)	197, 898
Bse3DI	GCAATG	1 cut(s)	632
BseDI	CCNNGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	405, 469
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	1 cut(s)	903
BseNI	ACTGG	2 cut(s)	197, 898
BseRI	GAGGAG	1 cut(s)	929
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	12, 195, 231
BseYI	CCCAGC	2 cut(s)	674, 770
BshFI	GGCC	3 cut(s)	321, 428, 646
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	2 cut(s)	233, 453
BsiSI	CCGG	3 cut(s)	226, 291, 323
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	2 cut(s)	405, 469
BsmAI	GTCTC	2 cut(s)	183, 406
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	3 cut(s)	321, 428, 646
Bso31I	GGTCTC	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	704
Bsp1286I	GDGCHC	3 cut(s)	157, 233, 453
Bsp143I	GATC	3 cut(s)	340, 786, 835
BspACI	CCGC	5 cut(s)	23, 144, 399, 656, 672
BspANI	GGCC	3 cut(s)	321, 428, 646
BspCNI	CTCAG	1 cut(s)	904
BspLI	GGNNCC	4 cut(s)	427, 492, 603, 918
BspMI	ACCTGC	1 cut(s)	925
BspT104I	TTCGAA	1 cut(s)	704
BspT107I	GGYRCC	1 cut(s)	490
BspTNI	GGTCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	632
BsrI	ACTGG	2 cut(s)	197, 898
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	3 cut(s)	340, 786, 835
Bst4CI	ACNGT	3 cut(s)	152, 179, 577
Bst6I	CTCTTC	2 cut(s)	275, 777
BstBI	TTCGAA	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	1 cut(s)	912
BstKTI	GATC	3 cut(s)	343, 789, 838
BstMAI	GTCTC	2 cut(s)	183, 406
BstMBI	GATC	3 cut(s)	340, 786, 835
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 228, 300, 327, 776
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	289, 321
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	3 cut(s)	12, 195, 231
BstV2I	GAAGAC	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	321, 428, 646
BtsIMutI	CAGTG	2 cut(s)	148, 573
BveI	ACCTGC	1 cut(s)	925
Cac8I	GCNNGC	1 cut(s)	453
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr13I	GGNCC	5 cut(s)	320, 426, 602, 644, 896
CseI	GACGC	2 cut(s)	272, 601
CviAII	CATG	3 cut(s)	376, 695, 969
DdeI	CTNAG	1 cut(s)	912
DpnI	GATC	3 cut(s)	342, 788, 837
DpnII	GATC	3 cut(s)	340, 786, 835
DrdI	GACNNNNNNGTC	1 cut(s)	903
DseDI	GACNNNNNNGTC	1 cut(s)	903
Eam1104I	CTCTTC	2 cut(s)	275, 777
EarI	CTCTTC	2 cut(s)	275, 777
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	602, 896
Eco57I	CTGAAG	2 cut(s)	646, 801
EcoO109I	RGGNCCY	1 cut(s)	602
FaeI	CATG	3 cut(s)	379, 698, 972
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	3 cut(s)	375, 694, 968
Fnu4HI	GCNGC	4 cut(s)	26, 184, 220, 399
Fsp4HI	GCNGC	4 cut(s)	26, 184, 220, 399
FspBI	CTAG	3 cut(s)	444, 711, 988
GluI	GCNGC	4 cut(s)	26, 184, 220, 399
GsaI	CCCAGC	2 cut(s)	678, 774
HaeIII	GGCC	3 cut(s)	321, 428, 646
HapII	CCGG	3 cut(s)	226, 291, 323
HgaI	GACGC	2 cut(s)	272, 601
Hin1II	CATG	3 cut(s)	379, 698, 972
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	4 cut(s)	236, 242, 865, 904
HpaII	CCGG	3 cut(s)	226, 291, 323
HphI	GGTGA	3 cut(s)	9, 133, 845
Hpy166II	GTNNAC	3 cut(s)	9, 202, 355
Hpy188I	TCNGA	3 cut(s)	241, 247, 734
Hpy188III	TCNNGA	1 cut(s)	790
Hpy8I	GTNNAC	3 cut(s)	9, 202, 355
Hpy99I	CGWCG	4 cut(s)	266, 317, 373, 817
HpyAV	CCTTC	5 cut(s)	66, 99, 125, 311, 716
HpyCH4III	ACNGT	3 cut(s)	152, 179, 577
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	3 cut(s)	4, 183, 972
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 228, 300, 327, 776
HpyF3I	CTNAG	1 cut(s)	912
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	379, 698, 972
Kzo9I	GATC	3 cut(s)	340, 786, 835
LmnI	GCTCC	4 cut(s)	228, 622, 715, 916
Lsp1109I	GCAGC	3 cut(s)	12, 195, 231
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	3 cut(s)	444, 711, 988
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	665
MalI	GATC	3 cut(s)	342, 788, 837
MboI	GATC	3 cut(s)	340, 786, 835
MboII	GAAGA	6 cut(s)	61, 262, 350, 652, 772, 794
MhlI	GDGCHC	3 cut(s)	157, 233, 453
MluCI	AATT	2 cut(s)	278, 735
MlyI	GAGTC	1 cut(s)	913
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	8 cut(s)	22, 30, 119, 284, 489, 525, 615, 907
MseI	TTAA	2 cut(s)	738, 890
MspA1I	CMGCKG	4 cut(s)	25, 674, 770, 779
MspI	CCGG	3 cut(s)	226, 291, 323
MspR9I	CCNGG	2 cut(s)	291, 323
MwoI	GCNNNNNNNGC	5 cut(s)	152, 228, 300, 327, 776
NciI	CCSGG	2 cut(s)	291, 323
NdeII	GATC	3 cut(s)	340, 786, 835
NlaIII	CATG	3 cut(s)	379, 698, 972
NlaIV	GGNNCC	4 cut(s)	427, 492, 603, 918
NspI	RCATGY	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	704
PciI	ACATGT	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	236, 242, 865
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	4 cut(s)	27, 185, 221, 400
PleI	GAGTC	1 cut(s)	912
PpsI	GAGTC	1 cut(s)	912
PpuMI	RGGWCCY	1 cut(s)	602
PscI	ACATGT	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	602
PspFI	CCCAGC	2 cut(s)	674, 770
PspN4I	GGNNCC	4 cut(s)	427, 492, 603, 918
PspPI	GGNCC	5 cut(s)	320, 426, 602, 644, 896
PspPPI	RGGWCCY	1 cut(s)	602
PstNI	CAGNNNCTG	1 cut(s)	415
PvuII	CAGCTG	2 cut(s)	770, 779
SaqAI	TTAA	2 cut(s)	738, 890
SatI	GCNGC	4 cut(s)	26, 184, 220, 399
Sau3AI	GATC	3 cut(s)	340, 786, 835
Sau96I	GGNCC	5 cut(s)	320, 426, 602, 644, 896
SchI	GAGTC	1 cut(s)	913
ScrFI	CCNGG	2 cut(s)	291, 323
SduI	GDGCHC	3 cut(s)	157, 233, 453
SfaNI	GCATC	1 cut(s)	826
SfuI	TTCGAA	1 cut(s)	704
SinI	GGWCC	2 cut(s)	602, 896
Sse9I	AATT	2 cut(s)	278, 735
SsiI	CCGC	5 cut(s)	23, 144, 399, 656, 672
SspMI	CTAG	3 cut(s)	444, 711, 988
StyD4I	CCNGG	2 cut(s)	289, 321
TaaI	ACNGT	3 cut(s)	152, 179, 577
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	4 cut(s)	371, 704, 789, 838
TasI	AATT	2 cut(s)	278, 735
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	3 cut(s)	236, 242, 865
Tru1I	TTAA	2 cut(s)	738, 890
Tru9I	TTAA	2 cut(s)	738, 890
TscAI	CASTG	2 cut(s)	155, 580
TseI	GCWGC	3 cut(s)	25, 183, 219
TspDTI	ATGAA	4 cut(s)	699, 913, 939, 957
TspRI	CASTG	2 cut(s)	155, 580
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	2 cut(s)	602, 896
XceI	RCATGY	1 cut(s)	379
XspI	CTAG	3 cut(s)	444, 711, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.