Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005815

Physical Location & Seq

Genomic Coordinates Forward (+)

12145639 .. 12148552

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1152800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCAGTCGACCTCATCAGCTCCATTGCCAAAATGCTCTAACCCTCTCTCCCTTAACCACTTCCACTTCCACTTCCACCATCGAAACCCTCGCAAAACCCTCAACTTCCTTCTCCTCCCCCCTAAACCCCAAACCCACTGCACCAACCACTGCGCCCTTTCCATCTCTCACACCCACAGTTGCAGCAGAGAGCACCAGAACCAGAGCCAGAAGCACATCAATGGCGATTCCGACCCCTATCAGAACGATATGTTGTTTCTGCAATTGAACCCCTCAGGAGACACCGAAGACGCCGGTAACCAAAGCCCAGAAGCCCCAAACGAAAAACGAGGGCGAGATCAAAGAGAGAGCGAAGCCGATAATTCCGAGGGACTTTCGACAAACATGTGGTGGGCAGACGTGAAAGCCGCATTGGGACAAAGGTTCAACTTTGGAGCCATGGTTCGTTCAGCCATGGTGCTCACGAAAGACAAGCACTTGGTGCTGCCTCATGTTTCTGTGCCTGATATAAGGTACATTGATTGGCCTGAGTTGCATAGAAGGGGTTTCAAGGGTGTTGTGTTTGATAAGGATAATACTATCACTGCACCTTATTCCTTGACGCTTTGGGGTCCTCTTGGGTCTTCATTGGAGCAGTGCAAATCCGTTTTTGGACCTGATATCGCGGTATTCAGTAACTCGGCTGGGCTTTATGAGTATGACCATGATGGTTCAAGAGCTAGGGAACTTGAAGGGGCTATTGGAATTAAAGTCATAAGACATAGAGTGAAGAAACCTGCCGGAACAGCTGAAGAGATCGAGAAGCATTTTGGTTGTAAATCGTCACACCTTATTATGGTGGGTGATCGGCCCTTAACTGATATTGTCTATGGTAATCAAAATGGATTTCTAACTATTTTAACCGAACCGTTGAGTCTCAACGAGGAACCGTTCATTGTTAGGCAGGTGAGGAAACTGGAAACAGCCCTTGTGAATCATAGGTTTAAGAGAGGGTTAAAGCCCACCAGTCATAGGCTGTTGCCTGACGGCAAGCAGTGTGTGAAACATCCGCCACCGCTAGCATATATAGTGAGCATGGCGGTGTCTGGAGCCATCACTGGAGCGTGCAAGAGGAGGATGGTTGAGCGACCGATTGAATGCAAATCCTCGTTGGTGCTGTGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

PGP_phosphatase

Protein Analysis

389

Amino Acids

43.51

Weight (kDa)

8.88

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGP_phosphatase	PF09419	150 - 304	4.3e-43	Mitochondrial PGP phosphatase
Hydrolase_like	PF13242	259 - 301	3.9e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58830 AT3G58830 AT3G58830
fragaria_vesca	FvH4_6g38130 FvH4_6g38130 FvH4_6g38130
malus_domestica	MD09G1152800.v1.1 MD17G1140200.v1.1
prunus_persica	Prupe.3G171400_v2.0.a1
pyrus_communis	pycom09g07240 pycom17g13330
rosa_chinensis	RchiOBHm_Chr2g0151351
rosa_laevigata	RLG00000020543
rosa_multiflora	Rmu_sc0002516.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096520 Rroxscaffold_2G00096600
rosa_rugosa	Rorug02G0425400 Rorug02G0425400 Rorug02G0425500
rosa_samantha	Rh2AG486300 Rh2AG486600 Rh2BG498300 Rh2BG498800 Rh2CG472500 Rh2DG509100 Rh2DG509700
rosa_wichuraiana	Rw2G039840 Rw2G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	934
Acc36I	ACCTGC	2 cut(s)	784, 934
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	665
AciI	CCGC	5 cut(s)	408, 665, 1049, 1055, 1079
AcuI	CTGAAG	1 cut(s)	810
AcyI	GRCGYC	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	835, 1011
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	6 cut(s)	268, 427, 550, 714, 731, 1136
AjiI	CACGTC	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	4 cut(s)	395, 427, 723, 755
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
AluBI	AGCT	3 cut(s)	20, 719, 788
AluI	AGCT	3 cut(s)	20, 719, 788
Alw21I	GWGCWC	2 cut(s)	195, 462
Alw26I	GTCTC	2 cut(s)	273, 920
AoxI	GGCC	2 cut(s)	524, 848
ApeKI	GCWGC	2 cut(s)	183, 484
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	611, 653, 849
AsuHPI	GGTGA	2 cut(s)	854, 958
AsuNHI	GCTAGC	1 cut(s)	1057
AvaII	GGWCC	2 cut(s)	611, 653
AxyI	CCTNAGG	1 cut(s)	274
BbsI	GAAGAC	2 cut(s)	294, 615
Bbv12I	GWGCWC	2 cut(s)	195, 462
BbvI	GCAGC	2 cut(s)	195, 471
BccI	CCATC	5 cut(s)	87, 170, 701, 1100, 1111
BceAI	ACGGC	1 cut(s)	1042
BcoDI	GTCTC	2 cut(s)	273, 920
BfaI	CTAG	2 cut(s)	720, 1058
BfuAI	ACCTGC	2 cut(s)	784, 934
BisI	GCNGC	3 cut(s)	184, 408, 485
BlsI	GCNGC	3 cut(s)	185, 409, 486
Bme18I	GGWCC	2 cut(s)	611, 653
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	3 cut(s)	611, 653, 849
BmiI	GGNNCC	4 cut(s)	436, 612, 927, 1090
BmtI	GCTAGC	1 cut(s)	1061
BpiI	GAAGAC	2 cut(s)	294, 615
BpmI	CTGGAG	2 cut(s)	1107, 1119
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	366, 438, 453
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 426, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	835, 1011
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	3 cut(s)	960, 1005, 1102
Bse21I	CCTNAGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	366, 438, 453
BseGI	GGATG	2 cut(s)	1045, 1122
BseLI	CCNNNNNNNGG	2 cut(s)	835, 1011
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	2 cut(s)	288, 519
BseNI	ACTGG	3 cut(s)	960, 1005, 1102
BseRI	GAGGAG	2 cut(s)	104, 1126
BseXI	GCAGC	2 cut(s)	195, 471
BseYI	CCCAGC	1 cut(s)	683
BsgI	GTGCAG	2 cut(s)	124, 570
Bsh1236I	CGCG	1 cut(s)	665
Bsh1285I	CGRYCG	1 cut(s)	1130
BshFI	GGCC	2 cut(s)	526, 850
BsiEI	CGRYCG	1 cut(s)	1130
BsiHKAI	GWGCWC	2 cut(s)	195, 462
BsiSI	CCGG	2 cut(s)	294, 780
BslFI	GGGAC	2 cut(s)	384, 429
BslI	CCNNNNNNNGG	2 cut(s)	835, 1011
BsmAI	GTCTC	2 cut(s)	273, 920
BsmFI	GGGAC	2 cut(s)	384, 429
BsmI	GAATGC	1 cut(s)	1142
BsnI	GGCC	2 cut(s)	526, 850
Bsp1286I	GDGCHC	2 cut(s)	195, 462
Bsp143I	GATC	3 cut(s)	337, 795, 844
Bsp19I	CCATGG	2 cut(s)	438, 453
BspACI	CCGC	5 cut(s)	408, 665, 1049, 1055, 1079
BspANI	GGCC	2 cut(s)	526, 850
BspCNI	CTCAG	2 cut(s)	287, 520
BspFNI	CGCG	1 cut(s)	665
BspLI	GGNNCC	4 cut(s)	436, 612, 927, 1090
BspMI	ACCTGC	2 cut(s)	784, 934
BspOI	GCTAGC	1 cut(s)	1061
BsrDI	GCAATG	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	3 cut(s)	960, 1005, 1102
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	3 cut(s)	366, 438, 453
BssMI	GATC	3 cut(s)	337, 795, 844
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	438, 453
Bst4CI	ACNGT	3 cut(s)	179, 909, 930
Bst6I	CTCTTC	1 cut(s)	786
BstACI	GRCGYC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstC8I	GCNNGC	3 cut(s)	1031, 1059, 1105
BstDEI	CTNAG	2 cut(s)	274, 528
BstDSI	CCRYGG	2 cut(s)	438, 453
BstEII	GGTNACC	1 cut(s)	296
BstF5I	GGATG	2 cut(s)	1045, 1122
BstFNI	CGCG	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	340, 798, 847
BstMAI	GTCTC	2 cut(s)	273, 920
BstMBI	GATC	3 cut(s)	337, 795, 844
BstMCI	CGRYCG	1 cut(s)	1130
BstMWI	GCNNNNNNNGC	3 cut(s)	481, 532, 785
BstNSI	RCATGY	1 cut(s)	388
BstPI	GGTNACC	1 cut(s)	296
BstUI	CGCG	1 cut(s)	665
BstV1I	GCAGC	2 cut(s)	195, 471
BstV2I	GAAGAC	2 cut(s)	294, 615
Bsu36I	CCTNAGG	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	526, 850
BtgI	CCRYGG	2 cut(s)	438, 453
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	1045, 1122
BtsI	GCAGTG	5 cut(s)	136, 148, 582, 641, 1040
BtsIMutI	CAGTG	6 cut(s)	136, 148, 582, 641, 1040, 1095
BveI	ACCTGC	2 cut(s)	784, 934
Cac8I	GCNNGC	3 cut(s)	1031, 1059, 1105
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	3 cut(s)	611, 653, 849
CseI	GACGC	2 cut(s)	299, 610
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	6 cut(s)	385, 439, 454, 491, 704, 1075
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	2 cut(s)	274, 528
DpnI	GATC	3 cut(s)	339, 797, 846
DpnII	GATC	3 cut(s)	337, 795, 844
DraIII	CACNNNGTG	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
EciI	GGCGGA	1 cut(s)	1038
Eco130I	CCWWGG	2 cut(s)	438, 453
Eco32I	GATATC	1 cut(s)	661
Eco47I	GGWCC	2 cut(s)	611, 653
Eco57I	CTGAAG	1 cut(s)	810
Eco81I	CCTNAGG	1 cut(s)	274
Eco91I	GGTNACC	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	661
EcoT14I	CCWWGG	2 cut(s)	438, 453
ErhI	CCWWGG	2 cut(s)	438, 453
FaeI	CATG	6 cut(s)	388, 442, 457, 494, 707, 1078
FaqI	GGGAC	2 cut(s)	384, 429
FatI	CATG	6 cut(s)	384, 438, 453, 490, 703, 1074
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	3 cut(s)	184, 408, 485
FokI	GGATG	2 cut(s)	1032, 1129
Fsp4HI	GCNGC	3 cut(s)	184, 408, 485
FspBI	CTAG	2 cut(s)	720, 1058
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	3 cut(s)	184, 408, 485
GsaI	CCCAGC	1 cut(s)	687
GsuI	CTGGAG	2 cut(s)	1107, 1119
HaeIII	GGCC	2 cut(s)	526, 850
HapII	CCGG	2 cut(s)	294, 780
HgaI	GACGC	2 cut(s)	299, 610
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	6 cut(s)	388, 442, 457, 494, 707, 1078
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	227, 913, 973
HpaII	CCGG	2 cut(s)	294, 780
HphI	GGTGA	2 cut(s)	854, 958
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	232, 243, 367
Hpy188III	TCNNGA	5 cut(s)	276, 463, 714, 799, 1086
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	3 cut(s)	119, 534, 725
HpyCH4III	ACNGT	3 cut(s)	179, 909, 930
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	9 cut(s)	4, 141, 183, 262, 535, 587, 639, 1107, 1140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	481, 532, 785
HpyF3I	CTNAG	2 cut(s)	274, 528
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	6 cut(s)	388, 442, 457, 494, 707, 1078
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	337, 795, 844
LmnI	GCTCC	5 cut(s)	25, 434, 631, 1088, 1100
Lsp1109I	GCAGC	2 cut(s)	195, 471
MaeI	CTAG	2 cut(s)	720, 1058
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	3 cut(s)	296, 674, 822
MalI	GATC	3 cut(s)	339, 797, 846
MboI	GATC	3 cut(s)	337, 795, 844
MboII	GAAGA	4 cut(s)	299, 615, 781, 803
MfeI	CAATTG	1 cut(s)	263
MhlI	GDGCHC	2 cut(s)	195, 462
MluCI	AATT	3 cut(s)	263, 361, 744
MlyI	GAGTC	1 cut(s)	922
MmeI	TCCRAC	1 cut(s)	255
MseI	TTAA	6 cut(s)	54, 747, 854, 899, 984, 995
MslI	CAYNNNNRTG	2 cut(s)	219, 1079
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	2 cut(s)	294, 780
MunI	CAATTG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	1142
MvnI	CGCG	1 cut(s)	665
MwoI	GCNNNNNNNGC	3 cut(s)	481, 532, 785
NcoI	CCATGG	2 cut(s)	438, 453
NdeII	GATC	3 cut(s)	337, 795, 844
NheI	GCTAGC	1 cut(s)	1057
NlaIII	CATG	6 cut(s)	388, 442, 457, 494, 707, 1078
NlaIV	GGNNCC	4 cut(s)	436, 612, 927, 1090
NmeAIII	GCCGAG	1 cut(s)	659
NmuCI	GTSAC	1 cut(s)	822
NspI	RCATGY	1 cut(s)	388
PaqCI	CACCTGC	1 cut(s)	934
PciI	ACATGT	1 cut(s)	384
PctI	GAATGC	1 cut(s)	1142
PfeI	GAWTC	2 cut(s)	227, 973
PkrI	GCNGC	3 cut(s)	185, 409, 486
PleI	GAGTC	1 cut(s)	921
PpsI	GAGTC	1 cut(s)	921
PpuMI	RGGWCCY	1 cut(s)	611
PscI	ACATGT	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	611
PspEI	GGTNACC	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	683
PspN4I	GGNNCC	4 cut(s)	436, 612, 927, 1090
PspPI	GGNCC	3 cut(s)	611, 653, 849
PspPPI	RGGWCCY	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	2 cut(s)	219, 1079
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	6 cut(s)	54, 747, 854, 899, 984, 995
SatI	GCNGC	3 cut(s)	184, 408, 485
Sau3AI	GATC	3 cut(s)	337, 795, 844
Sau96I	GGNCC	3 cut(s)	611, 653, 849
SchI	GAGTC	1 cut(s)	922
SduI	GDGCHC	2 cut(s)	195, 462
SinI	GGWCC	2 cut(s)	611, 653
SmiMI	CAYNNNNRTG	2 cut(s)	219, 1079
Sse9I	AATT	3 cut(s)	263, 361, 744
SsiI	CCGC	5 cut(s)	408, 665, 1049, 1055, 1079
SspMI	CTAG	2 cut(s)	720, 1058
StyI	CCWWGG	2 cut(s)	438, 453
TaaI	ACNGT	3 cut(s)	179, 909, 930
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	4 cut(s)	8, 82, 377, 798
TaqII	GACCGA	1 cut(s)	1144
TasI	AATT	3 cut(s)	263, 361, 744
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	2 cut(s)	227, 973
Tru1I	TTAA	6 cut(s)	54, 747, 854, 899, 984, 995
Tru9I	TTAA	6 cut(s)	54, 747, 854, 899, 984, 995
TscAI	CASTG	6 cut(s)	143, 155, 589, 641, 1040, 1102
TseFI	GTSAC	1 cut(s)	822
TseI	GCWGC	2 cut(s)	183, 484
Tsp45I	GTSAC	1 cut(s)	822
TspDTI	ATGAA	2 cut(s)	615, 922
TspGWI	ACGGA	1 cut(s)	634
TspRI	CASTG	6 cut(s)	143, 155, 589, 641, 1040, 1102
VpaK11BI	GGWCC	2 cut(s)	611, 653
XceI	RCATGY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	720, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.