RchiOBHm_Chr2g0151351

Mitochondrial PGP phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005815
Physical Location & Seq
Reverse (-)
68987533 .. 68990044
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52056

Sequence Viewer

Length: 1071 bp
ATGCAGTCAACCTCATCACCTCCGCTGCCCAAATGCCCTTACGCTCTCCCCAACCCTTCTCATCACTTCTTCCACCACCCCCACCACCCTTCCAAAAACCCTAACACCCTCTCCCTTCCCCAAAAGCCCCAAACCCACTTCACCGCCCACTGTGCCCTTTCCATATCCCACACCAACAGTTGCAGCAGAGACCACCCAGTAAACCAGAACCACAAACGCAGCCACCGGAGCACCGATTCCGATTCCGATTCCGATTCCGACCCATATCACTACGACGCACTCTTCCTCCAATTCAACTCCCCCGGCGACACCGACACCAGCACCAGCAACGACGAAGGCCCGGAAAGCCCATTTGAAGATCAAAGCGAAGTTCACAGGGGAGTTTCGTCGAACATGTGGTGGGCAGACTTGAAAGCCGCATTGGGGCAGAGACTGAACTTTGGGGCCATAGTGTTTTCGGCTAGGGTGCTCGTCAAAGACCAGCACTTGGCTCTGCCTCACGTTTCGGTGCCTGATATAAGGCACATTGATTGGGTTGAGCTTCACAGGAGGGGTTTCAAGGGCGTTGTGTTTGATAAGGACAACACTCTCACTGTGCCTTACTCTTTGACGCTTTGGGGTCCTCTTGGGTCGTCATTGGAGCAATGTAAATCAGTTTTCGGGCCAGATATTGCGGTCTTCAGTAACTCCGCTGGGCTGAATGAATATGACCATGATGGTTCGAAAGCTAGGGAGCTTGAAGGGGCTATCGGAATTAAAGTCATAAGGCATAGATTGAAGAAACCAGCTGGGACAGCTGAAGAGATCGAGAAGCATTTTGGTTGTCAGTCGTCGCATCTTATTATGGTGGGTGATCGACCCTTGACTGATATTGTCTATGGGAATCAAAATGGCTTTCTAACTATCTTAACTGGACCTTTGAGTCTTGCTGAGGAGCCATTCATTGTTAGGCAGGTGAGGAAACTAGAAACAGCCCTTGTGAATAGTTGGTCTAGGAAGGGGTTAAAACCCATGAGTCATAGGTTGTTGCCAGATGGCATGCAGTGTGTGAAACATCCACCACCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 map00564 map01100
Pfam Domains
Protein Families
PGP_phosphatase

Protein Analysis

356

Amino Acids

39.62

Weight (kDa)

6.78

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGP_phosphatase PF09419 153 - 306 1.2e-42 Mitochondrial PGP phosphatase
Hydrolase_like PF13242 262 - 304 3.7e-06 HAD-hyrolase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 943
AasI GACNNNNNNGTC 1 cut(s) 921
Acc36I ACCTGC 1 cut(s) 943
AccB1I GGYRCC 1 cut(s) 508
AccB7I CCANNNNNTGG 1 cut(s) 487
AciI CCGC 5 cut(s) 23, 144, 417, 674, 690
AcuI CTGAAG 2 cut(s) 664, 819
AfiI CCNNNNNNNGG 2 cut(s) 423, 487
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 6 cut(s) 295, 356, 412, 559, 740, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AluBI AGCT 5 cut(s) 541, 728, 736, 788, 797
AluI AGCT 5 cut(s) 541, 728, 736, 788, 797
Alw21I GWGCWC 2 cut(s) 233, 471
Alw26I GTCTC 2 cut(s) 183, 424
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 3 cut(s) 337, 444, 662
ApeKI GCWGC 3 cut(s) 25, 183, 219
AspS9I GGNCC 5 cut(s) 338, 444, 620, 662, 914
AsuC2I CCSGG 2 cut(s) 303, 341
AsuHPI GGTGA 4 cut(s) 9, 133, 863, 967
AsuII TTCGAA 1 cut(s) 722
AvaII GGWCC 2 cut(s) 620, 914
BaeGI GKGCMC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 670
Bbv12I GWGCWC 2 cut(s) 233, 471
BbvCI CCTCAGC 1 cut(s) 930
BbvI GCAGC 3 cut(s) 12, 195, 231
BccI CCATC 2 cut(s) 710, 1028
BcnI CCSGG 2 cut(s) 303, 341
BcoDI GTCTC 2 cut(s) 183, 424
BfaI CTAG 4 cut(s) 462, 729, 965, 993
BfuAI ACCTGC 1 cut(s) 943
BisI GCNGC 4 cut(s) 26, 184, 220, 417
BlsI GCNGC 4 cut(s) 27, 185, 221, 418
Bme1390I CCNGG 2 cut(s) 303, 341
Bme18I GGWCC 2 cut(s) 620, 914
BmgT120I GGNCC 5 cut(s) 338, 444, 620, 662, 914
BmiI GGNNCC 4 cut(s) 445, 510, 621, 936
BmrFI CCNGG 2 cut(s) 303, 341
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 844
BmuI ACTGGG 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 670
Bpu10I CCTNAGC 1 cut(s) 930
Bpu14I TTCGAA 1 cut(s) 722
BpuMI CCSGG 2 cut(s) 303, 341
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 301
BsaWI WCCGGW 1 cut(s) 225
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 423, 487
Bse1I ACTGG 2 cut(s) 197, 916
Bse3DI GCAATG 1 cut(s) 650
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 1054
BseLI CCNNNNNNNGG 2 cut(s) 423, 487
BseMI GCAATG 1 cut(s) 650
BseMII CTCAG 1 cut(s) 921
BseNI ACTGG 2 cut(s) 197, 916
BseRI GAGGAG 1 cut(s) 947
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 3 cut(s) 12, 195, 231
BseYI CCCAGC 2 cut(s) 692, 788
BshFI GGCC 3 cut(s) 339, 446, 664
BshNI GGYRCC 1 cut(s) 508
BsiHKAI GWGCWC 2 cut(s) 233, 471
BsiSI CCGG 3 cut(s) 226, 303, 341
BslFI GGGAC 1 cut(s) 805
BslI CCNNNNNNNGG 2 cut(s) 423, 487
BsmAI GTCTC 2 cut(s) 183, 424
BsmFI GGGAC 1 cut(s) 805
BsnI GGCC 3 cut(s) 339, 446, 664
Bso31I GGTCTC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 722
Bsp1286I GDGCHC 3 cut(s) 157, 233, 471
Bsp143I GATC 3 cut(s) 358, 804, 853
BspACI CCGC 5 cut(s) 23, 144, 417, 674, 690
BspANI GGCC 3 cut(s) 339, 446, 664
BspCNI CTCAG 1 cut(s) 922
BspLI GGNNCC 4 cut(s) 445, 510, 621, 936
BspMI ACCTGC 1 cut(s) 943
BspT104I TTCGAA 1 cut(s) 722
BspT107I GGYRCC 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 650
BsrI ACTGG 2 cut(s) 197, 916
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 3 cut(s) 358, 804, 853
Bst4CI ACNGT 3 cut(s) 152, 179, 595
Bst6I CTCTTC 2 cut(s) 287, 795
BstBI TTCGAA 1 cut(s) 722
BstC8I GCNNGC 1 cut(s) 1040
BstDEI CTNAG 1 cut(s) 930
BstF5I GGATG 1 cut(s) 1054
BstKTI GATC 3 cut(s) 361, 807, 856
BstMAI GTCTC 2 cut(s) 183, 424
BstMBI GATC 3 cut(s) 358, 804, 853
BstMWI GCNNNNNNNGC 4 cut(s) 152, 228, 345, 794
BstNSI RCATGY 2 cut(s) 397, 1042
BstSCI CCNGG 2 cut(s) 301, 339
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 12, 195, 231
BstV2I GAAGAC 1 cut(s) 670
BsuRI GGCC 3 cut(s) 339, 446, 664
BtsCI GGATG 1 cut(s) 1054
BtsI GCAGTG 1 cut(s) 1049
BtsIMutI CAGTG 3 cut(s) 148, 591, 1049
BveI ACCTGC 1 cut(s) 943
Cac8I GCNNGC 1 cut(s) 1040
CaiI CAGNNNCTG 1 cut(s) 433
Cfr13I GGNCC 5 cut(s) 338, 444, 620, 662, 914
CseI GACGC 2 cut(s) 284, 619
CviAII CATG 4 cut(s) 394, 713, 1012, 1039
DdeI CTNAG 1 cut(s) 930
DpnI GATC 3 cut(s) 360, 806, 855
DpnII GATC 3 cut(s) 358, 804, 853
DrdI GACNNNNNNGTC 1 cut(s) 921
DseDI GACNNNNNNGTC 1 cut(s) 921
Eam1104I CTCTTC 2 cut(s) 287, 795
EarI CTCTTC 2 cut(s) 287, 795
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 620, 914
Eco57I CTGAAG 2 cut(s) 664, 819
EcoO109I RGGNCCY 1 cut(s) 620
FaeI CATG 4 cut(s) 397, 716, 1015, 1042
FaqI GGGAC 1 cut(s) 805
FatI CATG 4 cut(s) 393, 712, 1011, 1038
Fnu4HI GCNGC 4 cut(s) 26, 184, 220, 417
FokI GGATG 1 cut(s) 1041
Fsp4HI GCNGC 4 cut(s) 26, 184, 220, 417
FspBI CTAG 4 cut(s) 462, 729, 965, 993
GluI GCNGC 4 cut(s) 26, 184, 220, 417
GsaI CCCAGC 2 cut(s) 696, 792
HaeIII GGCC 3 cut(s) 339, 446, 664
HapII CCGG 3 cut(s) 226, 303, 341
HgaI GACGC 2 cut(s) 284, 619
Hin1II CATG 4 cut(s) 397, 716, 1015, 1042
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 7 cut(s) 236, 242, 248, 254, 883, 922, 1015
HpaII CCGG 3 cut(s) 226, 303, 341
HphI GGTGA 4 cut(s) 9, 133, 863, 967
Hpy166II GTNNAC 3 cut(s) 9, 202, 373
Hpy188I TCNGA 5 cut(s) 241, 247, 253, 259, 752
Hpy188III TCNNGA 1 cut(s) 808
Hpy8I GTNNAC 3 cut(s) 9, 202, 373
Hpy99I CGWCG 4 cut(s) 278, 335, 391, 835
HpyAV CCTTC 6 cut(s) 66, 99, 125, 329, 734, 991
HpyCH4III ACNGT 3 cut(s) 152, 179, 595
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 3 cut(s) 4, 183, 1042
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 228, 345, 794
HpyF3I CTNAG 1 cut(s) 930
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 4 cut(s) 397, 716, 1015, 1042
Kzo9I GATC 3 cut(s) 358, 804, 853
LmnI GCTCC 4 cut(s) 228, 640, 733, 934
Lsp1109I GCAGC 3 cut(s) 12, 195, 231
LweI GCATC 1 cut(s) 844
MaeI CTAG 4 cut(s) 462, 729, 965, 993
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 683
MalI GATC 3 cut(s) 360, 806, 855
MboI GATC 3 cut(s) 358, 804, 853
MboII GAAGA 6 cut(s) 61, 274, 368, 670, 790, 812
MhlI GDGCHC 3 cut(s) 157, 233, 471
MluCI AATT 2 cut(s) 290, 753
MlyI GAGTC 2 cut(s) 931, 1024
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 9 cut(s) 22, 30, 119, 296, 507, 543, 633, 925, 951
MseI TTAA 3 cut(s) 756, 908, 1004
MspA1I CMGCKG 4 cut(s) 25, 692, 788, 797
MspI CCGG 3 cut(s) 226, 303, 341
MspR9I CCNGG 2 cut(s) 303, 341
MwoI GCNNNNNNNGC 4 cut(s) 152, 228, 345, 794
NciI CCSGG 2 cut(s) 303, 341
NdeII GATC 3 cut(s) 358, 804, 853
NlaIII CATG 4 cut(s) 397, 716, 1015, 1042
NlaIV GGNNCC 4 cut(s) 445, 510, 621, 936
NspI RCATGY 2 cut(s) 397, 1042
NspV TTCGAA 1 cut(s) 722
PaeI GCATGC 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 943
PciI ACATGT 1 cut(s) 393
PfeI GAWTC 5 cut(s) 236, 242, 248, 254, 883
PflMI CCANNNNNTGG 1 cut(s) 487
PkrI GCNGC 4 cut(s) 27, 185, 221, 418
PleI GAGTC 2 cut(s) 930, 1023
PpsI GAGTC 2 cut(s) 930, 1023
PpuMI RGGWCCY 1 cut(s) 620
PscI ACATGT 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 620
PspFI CCCAGC 2 cut(s) 692, 788
PspN4I GGNNCC 4 cut(s) 445, 510, 621, 936
PspPI GGNCC 5 cut(s) 338, 444, 620, 662, 914
PspPPI RGGWCCY 1 cut(s) 620
PstNI CAGNNNCTG 1 cut(s) 433
PvuII CAGCTG 2 cut(s) 788, 797
SaqAI TTAA 3 cut(s) 756, 908, 1004
SatI GCNGC 4 cut(s) 26, 184, 220, 417
Sau3AI GATC 3 cut(s) 358, 804, 853
Sau96I GGNCC 5 cut(s) 338, 444, 620, 662, 914
SchI GAGTC 2 cut(s) 931, 1024
ScrFI CCNGG 2 cut(s) 303, 341
SduI GDGCHC 3 cut(s) 157, 233, 471
SfaNI GCATC 1 cut(s) 844
SfuI TTCGAA 1 cut(s) 722
SinI GGWCC 2 cut(s) 620, 914
SphI GCATGC 1 cut(s) 1042
Sse9I AATT 2 cut(s) 290, 753
SsiI CCGC 5 cut(s) 23, 144, 417, 674, 690
SspMI CTAG 4 cut(s) 462, 729, 965, 993
StyD4I CCNGG 2 cut(s) 301, 339
TaaI ACNGT 3 cut(s) 152, 179, 595
TaiI ACGT 1 cut(s) 504
TaqI TCGA 4 cut(s) 389, 722, 807, 856
TasI AATT 2 cut(s) 290, 753
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 5 cut(s) 236, 242, 248, 254, 883
Tru1I TTAA 3 cut(s) 756, 908, 1004
Tru9I TTAA 3 cut(s) 756, 908, 1004
TscAI CASTG 3 cut(s) 155, 598, 1049
TseI GCWGC 3 cut(s) 25, 183, 219
TspDTI ATGAA 2 cut(s) 717, 931
TspRI CASTG 3 cut(s) 155, 598, 1049
Van91I CCANNNNNTGG 1 cut(s) 487
VpaK11BI GGWCC 2 cut(s) 620, 914
XceI RCATGY 2 cut(s) 397, 1042
XspI CTAG 4 cut(s) 462, 729, 965, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.