Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005815

Physical Location & Seq

Genomic Coordinates Reverse (-)

30164384 .. 30168407

Gene Structure 4024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCAGTCAACCTCTTCACCTCCGCTGCCCAAATGCCCTTACGCTCTCCCCCACCATTCTCCTCACTTCTTCCACCCTCATCCTCCCAAAAACCCTAACTCCCTCTCCTTCCCCCTAAACCCCAAAACCCACTTCACCTCCCACTGCTCCCTCTCCCTCTCCCACACCCACCACCCTTGCCGCACAGACCTCCCCAAAACCCACAAACCCACCCACGATTCCGATTCCGATTCCGATTCCGAATCCGACCCATATCACTACGACACACTCTTCCTCCAATTCAGCTCTTCCAACGACACCAGCACCAGCAACAACAAAGACCCGGAAAGCCCATTAGGCCCGGAAAGCCCGTTTGAAGATCAAACAGATAAAGTTGACAGGGGAGTTTCGTCGAACATGTGGTGGGCGGACTTGAAAGCCGCATTGGGGCAGAGATTGAACTTCGGGGCAATACTGTTTTCGGCTAGAGTGCTCGCCAAGGACCAGCACTTGGCTCTGCCTCATGTTTCGGTGCCGGATATACGGCACATTGATTGGGTTGAGCTTCACAGAAGAGGGTTCAAGGGCGTTGTGTTTGATAAGGACAACACTCTCACTGTGCCTTACTCTTTGACGCTTTGGGGTCCTCTTGGGTCTTCTTTGGAGCAGTGTAAATCGGTTTTCGGGCCTGATATTGCGGTCTTCAGTAACTCCGCTGGGCTGTATGAATATGACCATGATGGTTCGAAAGCTAGGGAGCTTGAAGGTGCTATTGGAATTAAAGTCATAAGGCATAGGTTGAAGAAACCAGCTGGGACAGCTGAAGAGATTGAGAAGCATTTTGGTTGTAAGTCGTCACATCTTATAATGGTGGGGGATCGACCATTGACTGATATTGTCTATGGGAATCAAAATGGCTTTCTAACTATCTTAACCGGACCTTTGAGTCTTGCTGAGGAGCCATTCATCGTTAGACAGAGCAAAGGTGGAAAAACCAAAGTTTTGGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

PGP_phosphatase

Protein Analysis

331

Amino Acids

36.55

Weight (kDa)

6.59

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGP_phosphatase	PF09419	156 - 307	1.4e-41	Mitochondrial PGP phosphatase
Hydrolase_like	PF13242	263 - 305	3.2e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58830 AT3G58830 AT3G58830
fragaria_vesca	FvH4_6g38130 FvH4_6g38130 FvH4_6g38130
malus_domestica	MD09G1152800.v1.1 MD17G1140200.v1.1
prunus_persica	Prupe.3G171400_v2.0.a1
pyrus_communis	pycom09g07240 pycom17g13330
rosa_chinensis	RchiOBHm_Chr2g0151351
rosa_laevigata	RLG00000020543
rosa_multiflora	Rmu_sc0002516.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096520 Rroxscaffold_2G00096600
rosa_rugosa	Rorug02G0425400 Rorug02G0425400 Rorug02G0425500
rosa_samantha	Rh2AG486300 Rh2AG486600 Rh2BG498300 Rh2BG498800 Rh2CG472500 Rh2DG509100 Rh2DG509700
rosa_wichuraiana	Rw2G039840 Rw2G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	845
AasI	GACNNNNNNGTC	1 cut(s)	924
AccB1I	GGYRCC	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	490
AciI	CCGC	6 cut(s)	23, 181, 407, 420, 677, 693
AclWI	GGATC	1 cut(s)	864
AcuI	CTGAAG	2 cut(s)	667, 822
AfiI	CCNNNNNNNGG	2 cut(s)	426, 490
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	6 cut(s)	356, 415, 439, 562, 743, 781
AjuI	GAANNNNNNNTTGG	6 cut(s)	116, 148, 407, 439, 735, 767
AluBI	AGCT	6 cut(s)	285, 544, 731, 739, 791, 800
AluI	AGCT	6 cut(s)	285, 544, 731, 739, 791, 800
Alw21I	GWGCWC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	864
AoxI	GGCC	2 cut(s)	337, 665
ApeKI	GCWGC	1 cut(s)	25
AspS9I	GGNCC	5 cut(s)	338, 481, 623, 665, 917
AsuC2I	CCSGG	2 cut(s)	323, 341
AsuHPI	GGTGA	2 cut(s)	9, 127
AsuII	TTCGAA	1 cut(s)	725
AvaII	GGWCC	3 cut(s)	481, 623, 917
BanI	GGYRCC	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	627, 673
Bbv12I	GWGCWC	1 cut(s)	474
BbvCI	CCTCAGC	1 cut(s)	933
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	1 cut(s)	713
BceAI	ACGGC	1 cut(s)	539
BcnI	CCSGG	2 cut(s)	323, 341
BfaI	CTAG	2 cut(s)	465, 732
BglI	GCCNNNNNGGC	1 cut(s)	336
BisI	GCNGC	3 cut(s)	26, 181, 420
BlsI	GCNGC	3 cut(s)	27, 182, 421
Bme1390I	CCNGG	2 cut(s)	323, 341
Bme18I	GGWCC	3 cut(s)	481, 623, 917
BmgT120I	GGNCC	5 cut(s)	338, 481, 623, 665, 917
BmiI	GGNNCC	3 cut(s)	513, 624, 939
BmrFI	CCNGG	2 cut(s)	323, 341
BpiI	GAAGAC	2 cut(s)	627, 673
Bpu10I	CCTNAGC	1 cut(s)	933
Bpu14I	TTCGAA	1 cut(s)	725
BpuMI	CCSGG	2 cut(s)	323, 341
BsaJI	CCNNGG	1 cut(s)	477
BsaWI	WCCGGW	1 cut(s)	914
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 89, 113, 119, 122, 152, 258, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 490
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	426, 490
BseMII	CTCAG	1 cut(s)	924
BseRI	GAGGAG	2 cut(s)	51, 950
BseXI	GCAGC	1 cut(s)	12
BseYI	CCCAGC	2 cut(s)	695, 791
BshFI	GGCC	2 cut(s)	339, 667
BshNI	GGYRCC	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	4 cut(s)	323, 341, 515, 915
BslFI	GGGAC	1 cut(s)	808
BslI	CCNNNNNNNGG	2 cut(s)	426, 490
BsmFI	GGGAC	1 cut(s)	808
BsnI	GGCC	2 cut(s)	339, 667
Bsp119I	TTCGAA	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	358, 856
BspACI	CCGC	6 cut(s)	23, 181, 407, 420, 677, 693
BspANI	GGCC	2 cut(s)	339, 667
BspCNI	CTCAG	1 cut(s)	925
BspLI	GGNNCC	3 cut(s)	513, 624, 939
BspPI	GGATC	1 cut(s)	864
BspQI	GCTCTTC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	725
BspT107I	GGYRCC	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	2 cut(s)	358, 856
BssT1I	CCWWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	456, 598
Bst6I	CTCTTC	5 cut(s)	19, 275, 292, 547, 798
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	933
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	361, 859
BstMBI	GATC	2 cut(s)	358, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 345, 797
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	321, 339
BstV1I	GCAGC	1 cut(s)	12
BstV2I	GAAGAC	2 cut(s)	627, 673
BstXI	CCANNNNNNTGG	1 cut(s)	982
BsuRI	GGCC	2 cut(s)	339, 667
BtsCI	GGATG	1 cut(s)	79
BtsI	GCAGTG	2 cut(s)	142, 653
BtsIMutI	CAGTG	3 cut(s)	142, 594, 653
Cac8I	GCNNGC	1 cut(s)	474
Cfr13I	GGNCC	5 cut(s)	338, 481, 623, 665, 917
CseI	GACGC	1 cut(s)	622
CspCI	CAANNNNNGTGG	2 cut(s)	158, 193
CviAII	CATG	3 cut(s)	397, 503, 716
DdeI	CTNAG	1 cut(s)	933
DpnI	GATC	2 cut(s)	360, 858
DpnII	GATC	2 cut(s)	358, 856
DrdI	GACNNNNNNGTC	1 cut(s)	924
DseDI	GACNNNNNNGTC	1 cut(s)	924
Eam1104I	CTCTTC	5 cut(s)	19, 275, 292, 547, 798
EarI	CTCTTC	5 cut(s)	19, 275, 292, 547, 798
EciI	GGCGGA	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	477
Eco47I	GGWCC	3 cut(s)	481, 623, 917
Eco57I	CTGAAG	2 cut(s)	667, 822
EcoO109I	RGGNCCY	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	3 cut(s)	400, 506, 719
FaqI	GGGAC	1 cut(s)	808
FatI	CATG	3 cut(s)	396, 502, 715
Fnu4HI	GCNGC	3 cut(s)	26, 181, 420
FokI	GGATG	1 cut(s)	66
Fsp4HI	GCNGC	3 cut(s)	26, 181, 420
FspBI	CTAG	2 cut(s)	465, 732
GluI	GCNGC	3 cut(s)	26, 181, 420
GsaI	CCCAGC	2 cut(s)	699, 795
HaeIII	GGCC	2 cut(s)	339, 667
HapII	CCGG	4 cut(s)	323, 341, 515, 915
HgaI	GACGC	1 cut(s)	622
Hin1II	CATG	3 cut(s)	400, 506, 719
HincII	GTYRAC	2 cut(s)	9, 376
HindII	GTYRAC	2 cut(s)	9, 376
HinfI	GANTC	7 cut(s)	218, 224, 230, 236, 242, 886, 925
HpaII	CCGG	4 cut(s)	323, 341, 515, 915
HphI	GGTGA	2 cut(s)	9, 127
Hpy166II	GTNNAC	2 cut(s)	9, 376
Hpy188I	TCNGA	5 cut(s)	223, 229, 235, 241, 247
Hpy8I	GTNNAC	2 cut(s)	9, 376
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	2 cut(s)	118, 737
HpyCH4III	ACNGT	2 cut(s)	456, 598
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 345, 797
HpyF3I	CTNAG	1 cut(s)	933
Hsp92II	CATG	3 cut(s)	400, 506, 719
Kzo9I	GATC	2 cut(s)	358, 856
LguI	GCTCTTC	1 cut(s)	292
LmnI	GCTCC	4 cut(s)	152, 643, 736, 937
Lsp1109I	GCAGC	1 cut(s)	12
MaeI	CTAG	2 cut(s)	465, 732
MaeIII	GTNAC	2 cut(s)	686, 834
MalI	GATC	2 cut(s)	360, 858
MboI	GATC	2 cut(s)	358, 856
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	2 cut(s)	278, 756
MlyI	GAGTC	1 cut(s)	934
MmeI	TCCRAC	2 cut(s)	270, 315
MseI	TTAA	2 cut(s)	759, 911
MspA1I	CMGCKG	4 cut(s)	25, 695, 791, 800
MspI	CCGG	4 cut(s)	323, 341, 515, 915
MspR9I	CCNGG	2 cut(s)	323, 341
MwoI	GCNNNNNNNGC	3 cut(s)	336, 345, 797
NciI	CCSGG	2 cut(s)	323, 341
NdeII	GATC	2 cut(s)	358, 856
NlaIII	CATG	3 cut(s)	400, 506, 719
NlaIV	GGNNCC	3 cut(s)	513, 624, 939
NmuCI	GTSAC	1 cut(s)	834
NspI	RCATGY	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	725
PciI	ACATGT	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	292
PfeI	GAWTC	6 cut(s)	218, 224, 230, 236, 242, 886
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	3 cut(s)	27, 182, 421
PleI	GAGTC	1 cut(s)	933
PpsI	GAGTC	1 cut(s)	933
PpuMI	RGGWCCY	1 cut(s)	623
PscI	ACATGT	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	623
PspFI	CCCAGC	2 cut(s)	695, 791
PspN4I	GGNNCC	3 cut(s)	513, 624, 939
PspPI	GGNCC	5 cut(s)	338, 481, 623, 665, 917
PspPPI	RGGWCCY	1 cut(s)	623
PvuII	CAGCTG	2 cut(s)	791, 800
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	759, 911
SatI	GCNGC	3 cut(s)	26, 181, 420
Sau3AI	GATC	2 cut(s)	358, 856
Sau96I	GGNCC	5 cut(s)	338, 481, 623, 665, 917
SchI	GAGTC	1 cut(s)	934
ScrFI	CCNGG	2 cut(s)	323, 341
SduI	GDGCHC	1 cut(s)	474
SfuI	TTCGAA	1 cut(s)	725
SinI	GGWCC	3 cut(s)	481, 623, 917
Sse9I	AATT	2 cut(s)	278, 756
SsiI	CCGC	6 cut(s)	23, 181, 407, 420, 677, 693
SspMI	CTAG	2 cut(s)	465, 732
StyD4I	CCNGG	2 cut(s)	321, 339
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	456, 598
TaqI	TCGA	3 cut(s)	392, 725, 859
TasI	AATT	2 cut(s)	278, 756
TauI	GCSGC	2 cut(s)	183, 422
TfiI	GAWTC	6 cut(s)	218, 224, 230, 236, 242, 886
Tru1I	TTAA	2 cut(s)	759, 911
Tru9I	TTAA	2 cut(s)	759, 911
TscAI	CASTG	3 cut(s)	149, 601, 653
TseFI	GTSAC	1 cut(s)	834
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	834
TspDTI	ATGAA	2 cut(s)	720, 934
TspRI	CASTG	3 cut(s)	149, 601, 653
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	3 cut(s)	481, 623, 917
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	2 cut(s)	465, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.