Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005815

Physical Location & Seq

Genomic Coordinates Reverse (-)

63824117 .. 63826438

Gene Structure 2322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG472500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCAGTCAACCTCATCACCCCCGCTGCCCAAATGCCCTTACGCTCTCCCCAACCCTTCTCATCACTTCTTCCACCACCCCCACCACCCTTCCAAAAACCCTAACACCCTCTCCCTTCCCCAAAAGCCCCAAACCCACTTCACCGCCCACTGTGCCCTCTCCATATCCCACACCAACAGTTGCAGCAGAGACCACCCAGTAAACCAGAACCACAAACGCAGCCACCGGAGCACCGATTCCGATTCCGATTCCGACCCATATCACTACGACGCACTCTTCCTCCAATTCAACTCCTCCGGCGACACCAGCACCAGCAACGACGAAGGCCCGGAAAGCCCATTTGAAGATCGAAGCGAAGTTCAGAGGGGAGTTTCGTCGAACATGTGGTGGGCAGACTTGAAAGCCGCATTGGGGCAGAGACTGAACTTTGGGGCCATAGTGTTTTCGGCTAGGGTGCTCGCCAAAGACCAGCACTTGGCTCTGCCTCACGTTTCGGTGCCTGATATAAGGCACATTGATTGGGTTGAGCTTCACAGGAGGGGTTTCAAGGGCGTTGTGTTTGATAAGGACAACACTCTCACTGTGCCTTACTCTTTGACGCTTTGGGGTCCTCTTGGGTCGTCATTGGAGCAATGTAAATCAGTTTTCGGGCCAGATATTGCGGTCTTCAGTAACTCCGCTGGGCTGAATGAATATGACCATGATGGTTCGAAAGCTAGGGAGCTTGAAGGGGCTATTGGAATTAAAGTCATAAGGCATAGATTGAAGAAACCGGCTGGGACAGCTGAAGAGATCGAGAAGCATTTTGGTTGTAAGTCGTCGCATCTTATTATGGTGGGTGATCGACCCTTGACTGATATTGTCTATGGGAATCAAAATGGCTTTCTAACTATCTTAACTGGACCTTTGAGTCTTACTGAGGAGCCATTCATTGTCAGGCAGGTGAGGAAACTAGAAACAGCCCTTGTGAATAGTTGGTCTAGGAAGGGGTTAAAACCCATGAGTCATAGGTTGTTGCCAGATGGCATGCAGTGTGTGAAACATCCACCACCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

PGP_phosphatase

Protein Analysis

352

Amino Acids

39.21

Weight (kDa)

7.79

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGP_phosphatase	PF09419	150 - 302	3.8e-42	Mitochondrial PGP phosphatase
Hydrolase_like	PF13242	258 - 300	3.5e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58830 AT3G58830 AT3G58830
fragaria_vesca	FvH4_6g38130 FvH4_6g38130 FvH4_6g38130
malus_domestica	MD09G1152800.v1.1 MD17G1140200.v1.1
prunus_persica	Prupe.3G171400_v2.0.a1
pyrus_communis	pycom09g07240 pycom17g13330
rosa_chinensis	RchiOBHm_Chr2g0151351
rosa_laevigata	RLG00000020543
rosa_multiflora	Rmu_sc0002516.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096520 Rroxscaffold_2G00096600
rosa_rugosa	Rorug02G0425400 Rorug02G0425400 Rorug02G0425500
rosa_samantha	Rh2AG486300 Rh2AG486600 Rh2BG498300 Rh2BG498800 Rh2CG472500 Rh2DG509100 Rh2DG509700
rosa_wichuraiana	Rw2G039840 Rw2G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	931
AasI	GACNNNNNNGTC	1 cut(s)	909
Acc36I	ACCTGC	1 cut(s)	931
AccB1I	GGYRCC	1 cut(s)	496
AccB7I	CCANNNNNTGG	1 cut(s)	475
AciI	CCGC	5 cut(s)	23, 144, 405, 662, 678
AcuI	CTGAAG	2 cut(s)	652, 807
AfiI	CCNNNNNNNGG	2 cut(s)	411, 475
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	6 cut(s)	289, 344, 400, 547, 728, 766
AjuI	GAANNNNNNNTTGG	4 cut(s)	392, 424, 720, 752
AluBI	AGCT	4 cut(s)	529, 716, 724, 785
AluI	AGCT	4 cut(s)	529, 716, 724, 785
Alw21I	GWGCWC	2 cut(s)	233, 459
Alw26I	GTCTC	2 cut(s)	183, 412
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	3 cut(s)	325, 432, 650
ApeKI	GCWGC	3 cut(s)	25, 183, 219
AspS9I	GGNCC	5 cut(s)	326, 432, 608, 650, 902
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	4 cut(s)	9, 133, 851, 955
AsuII	TTCGAA	1 cut(s)	710
AvaII	GGWCC	2 cut(s)	608, 902
BaeGI	GKGCMC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	658
Bbv12I	GWGCWC	2 cut(s)	233, 459
BbvI	GCAGC	3 cut(s)	12, 195, 231
BccI	CCATC	2 cut(s)	698, 1016
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	183, 412
BfaI	CTAG	4 cut(s)	450, 717, 953, 981
BfuAI	ACCTGC	1 cut(s)	931
BisI	GCNGC	4 cut(s)	26, 184, 220, 405
BlsI	GCNGC	4 cut(s)	27, 185, 221, 406
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	608, 902
BmgT120I	GGNCC	5 cut(s)	326, 432, 608, 650, 902
BmiI	GGNNCC	4 cut(s)	433, 498, 609, 924
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	832
BmuI	ACTGGG	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	658
Bpu14I	TTCGAA	1 cut(s)	710
BpuMI	CCSGG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 475
Bse118I	RCCGGY	1 cut(s)	772
Bse1I	ACTGG	2 cut(s)	197, 904
Bse3DI	GCAATG	1 cut(s)	638
BseGI	GGATG	1 cut(s)	1042
BseLI	CCNNNNNNNGG	2 cut(s)	411, 475
BseMI	GCAATG	1 cut(s)	638
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	2 cut(s)	197, 904
BseRI	GAGGAG	2 cut(s)	283, 935
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	12, 195, 231
BseYI	CCCAGC	2 cut(s)	680, 776
BshFI	GGCC	3 cut(s)	327, 434, 652
BshNI	GGYRCC	1 cut(s)	496
BsiHKAI	GWGCWC	2 cut(s)	233, 459
BsiSI	CCGG	4 cut(s)	226, 297, 329, 773
BslFI	GGGAC	1 cut(s)	793
BslI	CCNNNNNNNGG	2 cut(s)	411, 475
BsmAI	GTCTC	2 cut(s)	183, 412
BsmFI	GGGAC	1 cut(s)	793
BsnI	GGCC	3 cut(s)	327, 434, 652
Bso31I	GGTCTC	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	710
Bsp1286I	GDGCHC	3 cut(s)	157, 233, 459
Bsp143I	GATC	3 cut(s)	346, 792, 841
BspACI	CCGC	5 cut(s)	23, 144, 405, 662, 678
BspANI	GGCC	3 cut(s)	327, 434, 652
BspCNI	CTCAG	1 cut(s)	910
BspLI	GGNNCC	4 cut(s)	433, 498, 609, 924
BspMI	ACCTGC	1 cut(s)	931
BspT104I	TTCGAA	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	638
BsrFI	RCCGGY	1 cut(s)	772
BsrI	ACTGG	2 cut(s)	197, 904
BssAI	RCCGGY	1 cut(s)	772
BssMI	GATC	3 cut(s)	346, 792, 841
Bst4CI	ACNGT	3 cut(s)	152, 179, 583
Bst6I	CTCTTC	2 cut(s)	281, 783
BstBI	TTCGAA	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	459, 1028
BstDEI	CTNAG	1 cut(s)	918
BstF5I	GGATG	1 cut(s)	1042
BstKTI	GATC	3 cut(s)	349, 795, 844
BstMAI	GTCTC	2 cut(s)	183, 412
BstMBI	GATC	3 cut(s)	346, 792, 841
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 228, 306, 333, 782
BstNSI	RCATGY	2 cut(s)	385, 1030
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	3 cut(s)	12, 195, 231
BstV2I	GAAGAC	1 cut(s)	658
BsuRI	GGCC	3 cut(s)	327, 434, 652
BtsCI	GGATG	1 cut(s)	1042
BtsI	GCAGTG	1 cut(s)	1037
BtsIMutI	CAGTG	3 cut(s)	148, 579, 1037
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	2 cut(s)	459, 1028
CaiI	CAGNNNCTG	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	772
Cfr13I	GGNCC	5 cut(s)	326, 432, 608, 650, 902
CseI	GACGC	2 cut(s)	278, 607
CviAII	CATG	4 cut(s)	382, 701, 1000, 1027
DdeI	CTNAG	1 cut(s)	918
DpnI	GATC	3 cut(s)	348, 794, 843
DpnII	GATC	3 cut(s)	346, 792, 841
DrdI	GACNNNNNNGTC	1 cut(s)	909
DseDI	GACNNNNNNGTC	1 cut(s)	909
Eam1104I	CTCTTC	2 cut(s)	281, 783
EarI	CTCTTC	2 cut(s)	281, 783
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	608, 902
Eco57I	CTGAAG	2 cut(s)	652, 807
EcoO109I	RGGNCCY	1 cut(s)	608
FaeI	CATG	4 cut(s)	385, 704, 1003, 1030
FaqI	GGGAC	1 cut(s)	793
FatI	CATG	4 cut(s)	381, 700, 999, 1026
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	26, 184, 220, 405
FokI	GGATG	1 cut(s)	1029
Fsp4HI	GCNGC	4 cut(s)	26, 184, 220, 405
FspBI	CTAG	4 cut(s)	450, 717, 953, 981
GluI	GCNGC	4 cut(s)	26, 184, 220, 405
GsaI	CCCAGC	2 cut(s)	684, 780
HaeIII	GGCC	3 cut(s)	327, 434, 652
HapII	CCGG	4 cut(s)	226, 297, 329, 773
HgaI	GACGC	2 cut(s)	278, 607
Hin1II	CATG	4 cut(s)	385, 704, 1003, 1030
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	6 cut(s)	236, 242, 248, 871, 910, 1003
HpaII	CCGG	4 cut(s)	226, 297, 329, 773
HphI	GGTGA	4 cut(s)	9, 133, 851, 955
Hpy166II	GTNNAC	2 cut(s)	9, 202
Hpy188I	TCNGA	4 cut(s)	241, 247, 253, 363
Hpy188III	TCNNGA	1 cut(s)	796
Hpy8I	GTNNAC	2 cut(s)	9, 202
Hpy99I	CGWCG	4 cut(s)	272, 323, 379, 823
HpyAV	CCTTC	6 cut(s)	66, 99, 125, 317, 722, 979
HpyCH4III	ACNGT	3 cut(s)	152, 179, 583
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	3 cut(s)	4, 183, 1030
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 228, 306, 333, 782
HpyF3I	CTNAG	1 cut(s)	918
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	4 cut(s)	385, 704, 1003, 1030
Kzo9I	GATC	3 cut(s)	346, 792, 841
LmnI	GCTCC	4 cut(s)	228, 628, 721, 922
Lsp1109I	GCAGC	3 cut(s)	12, 195, 231
LweI	GCATC	1 cut(s)	832
MaeI	CTAG	4 cut(s)	450, 717, 953, 981
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	671
MalI	GATC	3 cut(s)	348, 794, 843
MboI	GATC	3 cut(s)	346, 792, 841
MboII	GAAGA	6 cut(s)	61, 268, 356, 658, 778, 800
MhlI	GDGCHC	3 cut(s)	157, 233, 459
MluCI	AATT	2 cut(s)	284, 741
MlyI	GAGTC	2 cut(s)	919, 1012
MmeI	TCCRAC	1 cut(s)	276
MseI	TTAA	3 cut(s)	744, 896, 992
MspA1I	CMGCKG	3 cut(s)	25, 680, 785
MspI	CCGG	4 cut(s)	226, 297, 329, 773
MspR9I	CCNGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	5 cut(s)	152, 228, 306, 333, 782
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	3 cut(s)	346, 792, 841
NlaIII	CATG	4 cut(s)	385, 704, 1003, 1030
NlaIV	GGNNCC	4 cut(s)	433, 498, 609, 924
NspI	RCATGY	2 cut(s)	385, 1030
NspV	TTCGAA	1 cut(s)	710
PaeI	GCATGC	1 cut(s)	1030
PaqCI	CACCTGC	1 cut(s)	931
PciI	ACATGT	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	236, 242, 248, 871
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	27, 185, 221, 406
PleI	GAGTC	2 cut(s)	918, 1011
PpsI	GAGTC	2 cut(s)	918, 1011
PpuMI	RGGWCCY	1 cut(s)	608
PscI	ACATGT	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	608
PspFI	CCCAGC	2 cut(s)	680, 776
PspN4I	GGNNCC	4 cut(s)	433, 498, 609, 924
PspPI	GGNCC	5 cut(s)	326, 432, 608, 650, 902
PspPPI	RGGWCCY	1 cut(s)	608
PstNI	CAGNNNCTG	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	785
SaqAI	TTAA	3 cut(s)	744, 896, 992
SatI	GCNGC	4 cut(s)	26, 184, 220, 405
Sau3AI	GATC	3 cut(s)	346, 792, 841
Sau96I	GGNCC	5 cut(s)	326, 432, 608, 650, 902
SchI	GAGTC	2 cut(s)	919, 1012
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	157, 233, 459
SfaNI	GCATC	1 cut(s)	832
SfuI	TTCGAA	1 cut(s)	710
SinI	GGWCC	2 cut(s)	608, 902
SphI	GCATGC	1 cut(s)	1030
Sse9I	AATT	2 cut(s)	284, 741
SsiI	CCGC	5 cut(s)	23, 144, 405, 662, 678
SspMI	CTAG	4 cut(s)	450, 717, 953, 981
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	3 cut(s)	152, 179, 583
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	5 cut(s)	349, 377, 710, 795, 844
TasI	AATT	2 cut(s)	284, 741
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	4 cut(s)	236, 242, 248, 871
Tru1I	TTAA	3 cut(s)	744, 896, 992
Tru9I	TTAA	3 cut(s)	744, 896, 992
TscAI	CASTG	3 cut(s)	155, 586, 1037
TseI	GCWGC	3 cut(s)	25, 183, 219
TspDTI	ATGAA	2 cut(s)	705, 919
TspRI	CASTG	3 cut(s)	155, 586, 1037
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	2 cut(s)	608, 902
XceI	RCATGY	2 cut(s)	385, 1030
XspI	CTAG	4 cut(s)	450, 717, 953, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.