Prupe.3G171400_v2.0.a1

Mitochondrial PGP phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0005815
Physical Location & Seq
Reverse (-)
19010873 .. 19014977
4105 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G171400.1

Sequence Viewer

Length: 1071 bp
ATGTCATCTTCTCAGTCAAAGACTCAAACTCCATTGCCCAAGTGCTCTTACCCTCTCCCAAACCACTTCCACTTCCACCATCGACATCCTAAGAAAAAACTCAACTTCCTAACCCTACCCCAAAAAACCAAAACCCACTTCACAAACCACTGTGCCCTTTACATCTCTCACGCAAACAGTTGCAGCAAAGAGCACCAAAACAAAACCCAGAAGCACAACAGCGGCAATCCCGACCCTTATCAGAACGATGCATTATTTCTACAACTGAACTGCTCCACTGGCACCGAAAGCTCCAATAATCAAAGCCCAGAAGCCCCTAGCGGAGAACAAGGACAAGATCAAAGAGAGAGCGAAGCCGATTATCCCAAGGGACTTTCCACAAACATGTGGTGGGCAGACGTGAAAGGAGCGTTGGGACAAAGGTTCAACTTTGGAGCCATTGCTCGTTCAGCCAGGGTGCTCACAAAAGACAAGCACTTGGCACTGCCTCACGTCTCTGTGCCTGATATAAGGTACATTGATTGGCCTGAGTTGCATAGAAGGGGTTTCAAGGGTGTTGTGTTTGACAAGGATAACACTTTAACTGTGCCTTATTCTTTGACGCTCTGGGGTCTTCTTGGCTCTTCATTGGAGCAGTGTAAATCTGTTTTCGGACCCGATATTGCGGTGTTCAGTAACTCGGCTGGTAATATTTTGCAGAACACATATGACCATGATGGTTCAAAAGCTAGGGAGCTTGAAGGGGCTATTGGAATCAAAGTCATAAGGCATAAAGTGAAGAAACCAGCTGGAACAGCTGAAGAGATCGAGAAGCATTTTGGTTGTAAAGCCTCACACCTTATTATGGTGGGTGATCGGCCCTTAACTGATATCGTCTATGGGAATCAAAATGGCTTTCTGACTATTTTAACTGAACCGTTGAGTCTTGCTGAGGAGCCATTCATTGTTAGGCAGGTGAGGAAACTAGAAACATCCCTTGTGAACCGTTGGTTTAGGAAAGGGTTAAAGCCCACCAGTCATAGGCTGTTGCCAGACGGTATGCAGTGTGTGAAACATTCACCACCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 map00564 map01100
Pfam Domains
Protein Families
PGP_phosphatase

Protein Analysis

357

Amino Acids

39.91

Weight (kDa)

9.25

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 943
Acc36I ACCTGC 1 cut(s) 943
AccB1I GGYRCC 1 cut(s) 281
AciI CCGC 3 cut(s) 222, 321, 665
AcuI CTGAAG 1 cut(s) 819
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 844, 1020
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 4 cut(s) 427, 550, 723, 740
AjiI CACGTC 2 cut(s) 400, 493
AjnI CCWGG 1 cut(s) 452
AjuI GAANNNNNNNTTGG 6 cut(s) 122, 154, 395, 427, 732, 764
AluBI AGCT 5 cut(s) 291, 728, 736, 788, 797
AluI AGCT 5 cut(s) 291, 728, 736, 788, 797
Alw21I GWGCWC 3 cut(s) 47, 195, 462
Alw26I GTCTC 1 cut(s) 499
AoxI GGCC 2 cut(s) 524, 857
ApeKI GCWGC 1 cut(s) 183
AspS9I GGNCC 2 cut(s) 653, 858
AsuHPI GGTGA 3 cut(s) 863, 967, 1050
AvaII GGWCC 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 605
Bbv12I GWGCWC 3 cut(s) 47, 195, 462
BbvCI CCTCAGC 1 cut(s) 930
BbvI GCAGC 1 cut(s) 195
BccI CCATC 2 cut(s) 87, 710
BciT130I CCWGG 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 499
BfaI CTAG 3 cut(s) 318, 729, 965
BfuAI ACCTGC 1 cut(s) 943
BisI GCNGC 2 cut(s) 184, 223
BlsI GCNGC 2 cut(s) 185, 224
Bme1390I CCNGG 1 cut(s) 454
Bme18I GGWCC 1 cut(s) 653
BmgBI CACGTC 2 cut(s) 400, 493
BmgT120I GGNCC 2 cut(s) 653, 858
BmiI GGNNCC 4 cut(s) 283, 436, 655, 936
BmrFI CCNGG 1 cut(s) 454
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 605
Bpu10I CCTNAGC 1 cut(s) 930
BsaJI CCNNGG 2 cut(s) 366, 453
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 844, 1020
Bse1I ACTGG 2 cut(s) 283, 1014
Bse3DI GCAATG 2 cut(s) 32, 438
BseBI CCWGG 1 cut(s) 454
BseDI CCNNGG 2 cut(s) 366, 453
BseGI GGATG 2 cut(s) 85, 971
BseLI CCNNNNNNNGG 2 cut(s) 844, 1020
BseMI GCAATG 2 cut(s) 32, 438
BseMII CTCAG 3 cut(s) 26, 519, 921
BseNI ACTGG 2 cut(s) 283, 1014
BseRI GAGGAG 1 cut(s) 947
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 1 cut(s) 195
BshFI GGCC 2 cut(s) 526, 859
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 3 cut(s) 47, 195, 462
BslFI GGGAC 2 cut(s) 384, 429
BslI CCNNNNNNNGG 2 cut(s) 844, 1020
BsmAI GTCTC 1 cut(s) 499
BsmBI CGTCTC 1 cut(s) 499
BsmFI GGGAC 2 cut(s) 384, 429
BsnI GGCC 2 cut(s) 526, 859
Bsp1286I GDGCHC 4 cut(s) 47, 157, 195, 462
Bsp143I GATC 3 cut(s) 337, 804, 853
BspACI CCGC 3 cut(s) 222, 321, 665
BspANI GGCC 2 cut(s) 526, 859
BspCNI CTCAG 3 cut(s) 25, 520, 922
BspLI GGNNCC 4 cut(s) 283, 436, 655, 936
BspMI ACCTGC 1 cut(s) 943
BspQI GCTCTTC 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 32, 438
BsrI ACTGG 2 cut(s) 283, 1014
BssECI CCNNGG 2 cut(s) 366, 453
BssMI GATC 3 cut(s) 337, 804, 853
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 454
Bst4CI ACNGT 6 cut(s) 152, 179, 586, 918, 986, 1037
Bst6I CTCTTC 2 cut(s) 628, 795
BstDEI CTNAG 4 cut(s) 12, 90, 528, 930
BstF5I GGATG 2 cut(s) 85, 971
BstKTI GATC 3 cut(s) 340, 807, 856
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 3 cut(s) 337, 804, 853
BstMWI GCNNNNNNNGC 5 cut(s) 279, 288, 449, 532, 794
BstNI CCWGG 1 cut(s) 454
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 452
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 605
BsuRI GGCC 2 cut(s) 526, 859
BtrI CACGTC 2 cut(s) 400, 493
BtsCI GGATG 2 cut(s) 85, 971
BtsI GCAGTG 3 cut(s) 482, 641, 1049
BtsIMutI CAGTG 5 cut(s) 148, 276, 482, 641, 1049
BveI ACCTGC 1 cut(s) 943
Cfr13I GGNCC 2 cut(s) 653, 858
CseI GACGC 1 cut(s) 610
Csp6I GTAC 1 cut(s) 514
CviAII CATG 2 cut(s) 385, 713
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 4 cut(s) 12, 90, 528, 930
DpnI GATC 3 cut(s) 339, 806, 855
DpnII GATC 3 cut(s) 337, 804, 853
Eam1104I CTCTTC 2 cut(s) 628, 795
EarI CTCTTC 2 cut(s) 628, 795
Eco130I CCWWGG 1 cut(s) 366
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 819
EcoRII CCWGG 1 cut(s) 452
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 366
EcoT22I ATGCAT 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 499
FaeI CATG 2 cut(s) 388, 716
FaqI GGGAC 2 cut(s) 384, 429
FatI CATG 2 cut(s) 384, 712
FauNDI CATATG 1 cut(s) 706
Fnu4HI GCNGC 2 cut(s) 184, 223
FokI GGATG 2 cut(s) 72, 958
Fsp4HI GCNGC 2 cut(s) 184, 223
FspBI CTAG 3 cut(s) 318, 729, 965
GluI GCNGC 2 cut(s) 184, 223
HaeIII GGCC 2 cut(s) 526, 859
HgaI GACGC 1 cut(s) 610
Hin1II CATG 2 cut(s) 388, 716
HinfI GANTC 4 cut(s) 22, 753, 883, 922
HphI GGTGA 3 cut(s) 863, 967, 1050
Hpy166II GTNNAC 1 cut(s) 982
Hpy188I TCNGA 3 cut(s) 243, 653, 900
Hpy188III TCNNGA 2 cut(s) 230, 808
Hpy8I GTNNAC 1 cut(s) 982
HpyAV CCTTC 2 cut(s) 534, 734
HpyCH4III ACNGT 6 cut(s) 152, 179, 586, 918, 986, 1037
HpyCH4IV ACGT 2 cut(s) 399, 492
HpyCH4V TGCA 5 cut(s) 183, 251, 535, 697, 1042
HpyF10VI GCNNNNNNNGC 5 cut(s) 279, 288, 449, 532, 794
HpyF3I CTNAG 4 cut(s) 12, 90, 528, 930
HpySE526I ACGT 2 cut(s) 399, 492
Hsp92II CATG 2 cut(s) 388, 716
Kzo9I GATC 3 cut(s) 337, 804, 853
LguI GCTCTTC 1 cut(s) 628
LmnI GCTCC 7 cut(s) 278, 296, 407, 434, 631, 733, 934
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 1 cut(s) 238
MaeI CTAG 3 cut(s) 318, 729, 965
MaeII ACGT 2 cut(s) 399, 492
MaeIII GTNAC 1 cut(s) 674
MalI GATC 3 cut(s) 339, 806, 855
MboI GATC 3 cut(s) 337, 804, 853
MboII GAAGA 4 cut(s) 605, 615, 790, 812
MhlI GDGCHC 4 cut(s) 47, 157, 195, 462
MlyI GAGTC 2 cut(s) 16, 931
MnlI CCTC 5 cut(s) 63, 498, 841, 925, 951
Mph1103I ATGCAT 1 cut(s) 253
MseI TTAA 4 cut(s) 581, 863, 908, 1004
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 3 cut(s) 222, 788, 797
MspR9I CCNGG 1 cut(s) 454
MvaI CCWGG 1 cut(s) 454
MwoI GCNNNNNNNGC 5 cut(s) 279, 288, 449, 532, 794
NdeI CATATG 1 cut(s) 706
NdeII GATC 3 cut(s) 337, 804, 853
NlaIII CATG 2 cut(s) 388, 716
NlaIV GGNNCC 4 cut(s) 283, 436, 655, 936
NmeAIII GCCGAG 1 cut(s) 659
NsiI ATGCAT 1 cut(s) 253
NspI RCATGY 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 943
PciI ACATGT 1 cut(s) 384
PciSI GCTCTTC 1 cut(s) 628
PfeI GAWTC 2 cut(s) 753, 883
PkrI GCNGC 2 cut(s) 185, 224
PleI GAGTC 2 cut(s) 16, 930
PpsI GAGTC 2 cut(s) 16, 930
PscI ACATGT 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 452
PspGI CCWGG 1 cut(s) 452
PspN4I GGNNCC 4 cut(s) 283, 436, 655, 936
PspPI GGNCC 2 cut(s) 653, 858
PvuII CAGCTG 2 cut(s) 788, 797
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 1 cut(s) 383
SapI GCTCTTC 1 cut(s) 628
SaqAI TTAA 4 cut(s) 581, 863, 908, 1004
SatI GCNGC 2 cut(s) 184, 223
Sau3AI GATC 3 cut(s) 337, 804, 853
Sau96I GGNCC 2 cut(s) 653, 858
SchI GAGTC 2 cut(s) 16, 931
ScrFI CCNGG 1 cut(s) 454
SduI GDGCHC 4 cut(s) 47, 157, 195, 462
SfaNI GCATC 1 cut(s) 238
SinI GGWCC 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 383
SsiI CCGC 3 cut(s) 222, 321, 665
SspI AATATT 1 cut(s) 691
SspMI CTAG 3 cut(s) 318, 729, 965
StyD4I CCNGG 1 cut(s) 452
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 6 cut(s) 152, 179, 586, 918, 986, 1037
TaiI ACGT 2 cut(s) 402, 495
TaqI TCGA 2 cut(s) 82, 807
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 2 cut(s) 753, 883
Tru1I TTAA 4 cut(s) 581, 863, 908, 1004
Tru9I TTAA 4 cut(s) 581, 863, 908, 1004
TscAI CASTG 5 cut(s) 155, 283, 489, 641, 1049
TseI GCWGC 1 cut(s) 183
TspDTI ATGAA 2 cut(s) 615, 931
TspRI CASTG 5 cut(s) 155, 283, 489, 641, 1049
VpaK11BI GGWCC 1 cut(s) 653
XceI RCATGY 1 cut(s) 388
XspI CTAG 3 cut(s) 318, 729, 965
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.