Rroxscaffold_2G00096520

Mitochondrial PGP phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005815
Physical Location & Seq
Forward (+)
17749944 .. 17752423
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096520.1

Sequence Viewer

Length: 1035 bp
ATGCAGTCAACCTCATCACCTCCGCTGCCCAAATGCCCTTACGCTCTCCCCAACCCTTCTCATCACTTCTTCCACCACCCCCACCACCCTTCCAAAAACCCTAACACCCTCTCCCTTCCCCAAAAGCCCCAAACTCACTTCACCGCCCACTGTGCCCTATCCATATCCCACACCAACAGTTGCAGCAGAGACCACCCAATAAACCAGAACCACAAACGCAGCCACCGGAGCACCGATTCCGACCCACATCACTACGACGCACTCTTACTCCAATTCAACTCCTCCGGCGACACCAGCACCAGCAACGACGAAGGCCCGGAAAGCCCATTTGAAGATCAGAGCGAAGTTCACAGGGGAGTTTCGTCGAACATGTGGTGGGCAGACTTGAAAGCCGCATTGGGGCAGAGACTGAACTTTGGGGCCATAGTGTTTTCGGCTAGGGTGCTCGCCAAAGACCAGCACTTGGCTCTGCCTCACGTTTCTGTGCCTGATATAAGGCACATTGATTGGGTTGAGCTTCACAGGAGGGGTTTCAAGGGCGTTGTGTTTGATAAGGACAACACTCTCACTGTGCCTTACTCTTTGACGCTTTGGGGTCCTCTTGGGTCTTCATTGGAGCAATGTAAATCAGTTTTCGGGCCAGATATTGCGGTCTTCAGTAACTCCGCTGGGCTGAATGAATATGACCATGATGGTTCGAAAGCTAGGGAGCTTGAAGGGGCTATTGGAATTAAAGTCATAAGGCATAGATTGAAGAAACCAGCTGGGACAGCTGAAGAGATCGAGAAGCATTTTGGTTGTAAGTGGGTGATCGACCCCTTGACTGATATTGTCTATGGGAATCAAAATGGCTTTCTAACTATCTTAACTGGACCTTTGAGTCTTGCTGAGGAGCCATTCATTGTTCGGCAGGTGAGGAAACTAGAAACAGCCCTTGTGAATAGTTGGTCTAGGAAGGGGTTAAAACCCATGAGTCATAGGTTGTTACCAGATGGCATGCAGTGTGTGAAACATCCACCACCTCTTTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 map00564 map01100
Pfam Domains
Protein Families
PGP_phosphatase

Protein Analysis

344

Amino Acids

38.34

Weight (kDa)

8.2

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGP_phosphatase PF09419 146 - 290 1.8e-33 Mitochondrial PGP phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 901
AasI GACNNNNNNGTC 1 cut(s) 879
Acc36I ACCTGC 1 cut(s) 901
AccB7I CCANNNNNTGG 1 cut(s) 463
AciI CCGC 5 cut(s) 23, 144, 393, 650, 666
AcuI CTGAAG 2 cut(s) 640, 795
AfiI CCNNNNNNNGG 2 cut(s) 399, 463
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 7 cut(s) 277, 332, 388, 535, 716, 754, 1029
AjuI GAANNNNNNNTTGG 4 cut(s) 380, 412, 708, 740
AluBI AGCT 5 cut(s) 517, 704, 712, 764, 773
AluI AGCT 5 cut(s) 517, 704, 712, 764, 773
Alw21I GWGCWC 2 cut(s) 233, 447
Alw26I GTCTC 2 cut(s) 183, 400
AlwNI CAGNNNCTG 1 cut(s) 409
AoxI GGCC 3 cut(s) 313, 420, 638
ApeKI GCWGC 3 cut(s) 25, 183, 219
AspS9I GGNCC 5 cut(s) 314, 420, 596, 638, 872
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 4 cut(s) 9, 133, 820, 925
AsuII TTCGAA 1 cut(s) 698
AvaII GGWCC 2 cut(s) 596, 872
BaeGI GKGCMC 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 600, 646
Bbv12I GWGCWC 2 cut(s) 233, 447
BbvCI CCTCAGC 1 cut(s) 888
BbvI GCAGC 3 cut(s) 12, 195, 231
BccI CCATC 2 cut(s) 686, 986
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 183, 400
BfaI CTAG 4 cut(s) 438, 705, 923, 951
BfuAI ACCTGC 1 cut(s) 901
BisI GCNGC 4 cut(s) 26, 184, 220, 393
BlsI GCNGC 4 cut(s) 27, 185, 221, 394
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 2 cut(s) 596, 872
BmgT120I GGNCC 5 cut(s) 314, 420, 596, 638, 872
BmiI GGNNCC 3 cut(s) 421, 597, 894
BmrFI CCNGG 1 cut(s) 317
BpiI GAAGAC 2 cut(s) 600, 646
Bpu10I CCTNAGC 1 cut(s) 888
Bpu14I TTCGAA 1 cut(s) 698
BpuMI CCSGG 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 225
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 252, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 463
Bse1I ACTGG 1 cut(s) 874
Bse3DI GCAATG 1 cut(s) 626
BseGI GGATG 1 cut(s) 1012
BseLI CCNNNNNNNGG 2 cut(s) 399, 463
BseMI GCAATG 1 cut(s) 626
BseMII CTCAG 1 cut(s) 879
BseNI ACTGG 1 cut(s) 874
BseRI GAGGAG 2 cut(s) 271, 905
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 3 cut(s) 12, 195, 231
BseYI CCCAGC 2 cut(s) 668, 764
BshFI GGCC 3 cut(s) 315, 422, 640
BsiHKAI GWGCWC 2 cut(s) 233, 447
BsiSI CCGG 3 cut(s) 226, 285, 317
BslFI GGGAC 1 cut(s) 781
BslI CCNNNNNNNGG 2 cut(s) 399, 463
BsmAI GTCTC 2 cut(s) 183, 400
BsmFI GGGAC 1 cut(s) 781
BsnI GGCC 3 cut(s) 315, 422, 640
Bso31I GGTCTC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 698
Bsp1286I GDGCHC 3 cut(s) 157, 233, 447
Bsp143I GATC 3 cut(s) 334, 780, 810
BspACI CCGC 5 cut(s) 23, 144, 393, 650, 666
BspANI GGCC 3 cut(s) 315, 422, 640
BspCNI CTCAG 1 cut(s) 880
BspLI GGNNCC 3 cut(s) 421, 597, 894
BspMI ACCTGC 1 cut(s) 901
BspT104I TTCGAA 1 cut(s) 698
BspTNI GGTCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 626
BsrI ACTGG 1 cut(s) 874
BssMI GATC 3 cut(s) 334, 780, 810
Bst4CI ACNGT 3 cut(s) 152, 179, 571
Bst6I CTCTTC 1 cut(s) 771
BstBI TTCGAA 1 cut(s) 698
BstC8I GCNNGC 2 cut(s) 447, 998
BstDEI CTNAG 1 cut(s) 888
BstF5I GGATG 1 cut(s) 1012
BstKTI GATC 3 cut(s) 337, 783, 813
BstMAI GTCTC 2 cut(s) 183, 400
BstMBI GATC 3 cut(s) 334, 780, 810
BstMWI GCNNNNNNNGC 5 cut(s) 152, 228, 294, 321, 770
BstNSI RCATGY 2 cut(s) 373, 1000
BstSCI CCNGG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 12, 195, 231
BstV2I GAAGAC 2 cut(s) 600, 646
BsuRI GGCC 3 cut(s) 315, 422, 640
BtsCI GGATG 1 cut(s) 1012
BtsI GCAGTG 1 cut(s) 1007
BtsIMutI CAGTG 3 cut(s) 148, 567, 1007
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 2 cut(s) 447, 998
CaiI CAGNNNCTG 1 cut(s) 409
Cfr13I GGNCC 5 cut(s) 314, 420, 596, 638, 872
CseI GACGC 2 cut(s) 266, 595
CviAII CATG 4 cut(s) 370, 689, 970, 997
DdeI CTNAG 1 cut(s) 888
DpnI GATC 3 cut(s) 336, 782, 812
DpnII GATC 3 cut(s) 334, 780, 810
DrdI GACNNNNNNGTC 1 cut(s) 879
DseDI GACNNNNNNGTC 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 596, 872
Eco57I CTGAAG 2 cut(s) 640, 795
EcoO109I RGGNCCY 1 cut(s) 596
FaeI CATG 4 cut(s) 373, 692, 973, 1000
FaqI GGGAC 1 cut(s) 781
FatI CATG 4 cut(s) 369, 688, 969, 996
Fnu4HI GCNGC 4 cut(s) 26, 184, 220, 393
FokI GGATG 1 cut(s) 999
Fsp4HI GCNGC 4 cut(s) 26, 184, 220, 393
FspBI CTAG 4 cut(s) 438, 705, 923, 951
GluI GCNGC 4 cut(s) 26, 184, 220, 393
GsaI CCCAGC 2 cut(s) 672, 768
HaeIII GGCC 3 cut(s) 315, 422, 640
HapII CCGG 3 cut(s) 226, 285, 317
HgaI GACGC 2 cut(s) 266, 595
Hin1II CATG 4 cut(s) 373, 692, 973, 1000
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 4 cut(s) 236, 841, 880, 973
HpaII CCGG 3 cut(s) 226, 285, 317
HphI GGTGA 4 cut(s) 9, 133, 820, 925
Hpy166II GTNNAC 2 cut(s) 9, 349
Hpy188I TCNGA 2 cut(s) 241, 339
Hpy188III TCNNGA 1 cut(s) 784
Hpy8I GTNNAC 2 cut(s) 9, 349
Hpy99I CGWCG 3 cut(s) 260, 311, 367
HpyAV CCTTC 6 cut(s) 66, 99, 125, 305, 710, 949
HpyCH4III ACNGT 3 cut(s) 152, 179, 571
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 3 cut(s) 4, 183, 1000
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 228, 294, 321, 770
HpyF3I CTNAG 1 cut(s) 888
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 4 cut(s) 373, 692, 973, 1000
Kzo9I GATC 3 cut(s) 334, 780, 810
LmnI GCTCC 4 cut(s) 228, 616, 709, 892
Lsp1109I GCAGC 3 cut(s) 12, 195, 231
MaeI CTAG 4 cut(s) 438, 705, 923, 951
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 659, 984
MalI GATC 3 cut(s) 336, 782, 812
MboI GATC 3 cut(s) 334, 780, 810
MboII GAAGA 6 cut(s) 61, 344, 600, 646, 766, 788
MhlI GDGCHC 3 cut(s) 157, 233, 447
MluCI AATT 2 cut(s) 272, 729
MlyI GAGTC 2 cut(s) 889, 982
MmeI TCCRAC 1 cut(s) 264
MseI TTAA 3 cut(s) 732, 866, 962
MspA1I CMGCKG 4 cut(s) 25, 668, 764, 773
MspI CCGG 3 cut(s) 226, 285, 317
MspR9I CCNGG 1 cut(s) 317
MwoI GCNNNNNNNGC 5 cut(s) 152, 228, 294, 321, 770
NciI CCSGG 1 cut(s) 317
NdeII GATC 3 cut(s) 334, 780, 810
NlaIII CATG 4 cut(s) 373, 692, 973, 1000
NlaIV GGNNCC 3 cut(s) 421, 597, 894
NspI RCATGY 2 cut(s) 373, 1000
NspV TTCGAA 1 cut(s) 698
PaeI GCATGC 1 cut(s) 1000
PaqCI CACCTGC 1 cut(s) 901
PciI ACATGT 1 cut(s) 369
PfeI GAWTC 2 cut(s) 236, 841
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 4 cut(s) 27, 185, 221, 394
PleI GAGTC 2 cut(s) 888, 981
PpsI GAGTC 2 cut(s) 888, 981
PpuMI RGGWCCY 1 cut(s) 596
PscI ACATGT 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 596
PspFI CCCAGC 2 cut(s) 668, 764
PspN4I GGNNCC 3 cut(s) 421, 597, 894
PspPI GGNCC 5 cut(s) 314, 420, 596, 638, 872
PspPPI RGGWCCY 1 cut(s) 596
PstNI CAGNNNCTG 1 cut(s) 409
PvuII CAGCTG 2 cut(s) 764, 773
SaqAI TTAA 3 cut(s) 732, 866, 962
SatI GCNGC 4 cut(s) 26, 184, 220, 393
Sau3AI GATC 3 cut(s) 334, 780, 810
Sau96I GGNCC 5 cut(s) 314, 420, 596, 638, 872
SchI GAGTC 2 cut(s) 889, 982
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 3 cut(s) 157, 233, 447
SfuI TTCGAA 1 cut(s) 698
SinI GGWCC 2 cut(s) 596, 872
SphI GCATGC 1 cut(s) 1000
Sse9I AATT 2 cut(s) 272, 729
SsiI CCGC 5 cut(s) 23, 144, 393, 650, 666
SspMI CTAG 4 cut(s) 438, 705, 923, 951
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 3 cut(s) 152, 179, 571
TaiI ACGT 1 cut(s) 480
TaqI TCGA 4 cut(s) 365, 698, 783, 813
TasI AATT 2 cut(s) 272, 729
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 2 cut(s) 236, 841
Tru1I TTAA 3 cut(s) 732, 866, 962
Tru9I TTAA 3 cut(s) 732, 866, 962
TscAI CASTG 3 cut(s) 155, 574, 1007
TseI GCWGC 3 cut(s) 25, 183, 219
TspDTI ATGAA 3 cut(s) 600, 693, 889
TspRI CASTG 3 cut(s) 155, 574, 1007
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 596, 872
XceI RCATGY 2 cut(s) 373, 1000
XspI CTAG 4 cut(s) 438, 705, 923, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.