Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005815

Physical Location & Seq

Genomic Coordinates Reverse (-)

65333679 .. 65336192

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCAGTCAACCTCATCACCTCCGCTGCCCAAATGCCCTTACGCTCTCCCCAACCCTTCTCATCACTTCTTCCACCACCCCCACCACCCTTCCAAAAACCCTAACACCCTCTCCCTTCCCCAAAAGCCCCAAACCCACTTCACCGCCCACTGTGCCCTTTCCATATCCCACACCAACAGTTGCAGCAGAGACCACCCAGTAAACCAGAACCACAAACGCAGCCACCGGAGCACCGATTCCGATTCCGATTCCGATTCCGACCCATATCACTACGACGCACTCTTCCTCCAATTCAACTCCCCCGGCGACACCAGCACCAGCAACGACGAAGGCCCGGAAAGCCCATTCGAAGATCAAAGCGAAGTTCACAGGGGAGTTTCGTCGAACATGTGGTGGGCAGACTTGAAAGCCGCATTGGGGCAGAGACTGAACTTTGGGGCCATAGTGTTTTCGGCTAGGGTGCTCGCCAAAGACCAGCACCTGGCTCTGCCTCACGTTTCGGTGCCTGATATAAGGCACATTGATTGGGTTGAGCTTCACAGGAGGGGTTTCAAGGGCGTTGTGTTTGATAAGGACAACACTCTCACTGTGCCTTACTCTTTGACGCTTTGGGGTCCTCTTGGGTCGTCATTGGAGCAATGTAAATCAGTTTTCGGGCCAGATATTGCGGTCTTCAGTAACTCTGCTGGGCTGAATGAATATGACCATGATGGTTCGAAAGCTAGGGAGCTTGAAGGGGCTATCGGAATTAAAGTCATAAGGCATAGATTGAAGAAACCAGCTGGGACAGCTGAAGAGATCGAGAAGCATTTTGGTTGTCAGTCGTCGCATCTTATTATGGTGGGTGATCGACCCTTGACTGATATTGTCTATGGGAATCAAAATGGCTTTCTAACTATCTTAACTGGACCTTTGAGTCTTGCTGAGGAGCCATTCATTGTTAGGCAGGTGAGGAAACTAGAAACAGCCCTTGTGAATAGTTGGTCTAGGAAGGGGTTAAAACCCATGAGTCATAGGTTGTTGCCAGATGGCATGCAGTGTGTGAAACATCCACCACCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

PGP_phosphatase

Protein Analysis

354

Amino Acids

39.37

Weight (kDa)

6.92

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGP_phosphatase	PF09419	152 - 304	3.6e-42	Mitochondrial PGP phosphatase
Hydrolase_like	PF13242	260 - 302	3.7e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58830 AT3G58830 AT3G58830
fragaria_vesca	FvH4_6g38130 FvH4_6g38130 FvH4_6g38130
malus_domestica	MD09G1152800.v1.1 MD17G1140200.v1.1
prunus_persica	Prupe.3G171400_v2.0.a1
pyrus_communis	pycom09g07240 pycom17g13330
rosa_chinensis	RchiOBHm_Chr2g0151351
rosa_laevigata	RLG00000020543
rosa_multiflora	Rmu_sc0002516.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096520 Rroxscaffold_2G00096600
rosa_rugosa	Rorug02G0425400 Rorug02G0425400 Rorug02G0425500
rosa_samantha	Rh2AG486300 Rh2AG486600 Rh2BG498300 Rh2BG498800 Rh2CG472500 Rh2DG509100 Rh2DG509700
rosa_wichuraiana	Rw2G039840 Rw2G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	937
AasI	GACNNNNNNGTC	1 cut(s)	915
Acc36I	ACCTGC	1 cut(s)	937
AccB1I	GGYRCC	1 cut(s)	502
AccB7I	CCANNNNNTGG	1 cut(s)	481
AciI	CCGC	4 cut(s)	23, 144, 411, 668
AcuI	CTGAAG	2 cut(s)	658, 813
AfiI	CCNNNNNNNGG	2 cut(s)	417, 481
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	5 cut(s)	295, 406, 553, 734, 772
AjnI	CCWGG	1 cut(s)	480
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	5 cut(s)	535, 722, 730, 782, 791
AluI	AGCT	5 cut(s)	535, 722, 730, 782, 791
Alw21I	GWGCWC	2 cut(s)	233, 465
Alw26I	GTCTC	2 cut(s)	183, 418
AlwNI	CAGNNNCTG	2 cut(s)	427, 481
AoxI	GGCC	3 cut(s)	331, 438, 656
ApeKI	GCWGC	3 cut(s)	25, 183, 219
AspS9I	GGNCC	5 cut(s)	332, 438, 614, 656, 908
AsuC2I	CCSGG	2 cut(s)	303, 335
AsuHPI	GGTGA	4 cut(s)	9, 133, 857, 961
AsuII	TTCGAA	2 cut(s)	348, 716
AvaII	GGWCC	2 cut(s)	614, 908
BaeGI	GKGCMC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	664
Bbv12I	GWGCWC	2 cut(s)	233, 465
BbvCI	CCTCAGC	1 cut(s)	924
BbvI	GCAGC	3 cut(s)	12, 195, 231
BccI	CCATC	2 cut(s)	704, 1022
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	2 cut(s)	303, 335
BcoDI	GTCTC	2 cut(s)	183, 418
BfaI	CTAG	4 cut(s)	456, 723, 959, 987
BfuAI	ACCTGC	1 cut(s)	937
BisI	GCNGC	4 cut(s)	26, 184, 220, 411
BlsI	GCNGC	4 cut(s)	27, 185, 221, 412
Bme1390I	CCNGG	3 cut(s)	303, 335, 482
Bme18I	GGWCC	2 cut(s)	614, 908
BmgT120I	GGNCC	5 cut(s)	332, 438, 614, 656, 908
BmiI	GGNNCC	4 cut(s)	439, 504, 615, 930
BmrFI	CCNGG	3 cut(s)	303, 335, 482
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	838
BmuI	ACTGGG	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	664
Bpu10I	CCTNAGC	1 cut(s)	924
Bpu14I	TTCGAA	2 cut(s)	348, 716
BpuMI	CCSGG	2 cut(s)	303, 335
BsaI	GGTCTC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 481
Bse1I	ACTGG	2 cut(s)	197, 910
Bse3DI	GCAATG	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	1048
BseLI	CCNNNNNNNGG	2 cut(s)	417, 481
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	1 cut(s)	915
BseNI	ACTGG	2 cut(s)	197, 910
BseRI	GAGGAG	1 cut(s)	941
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	12, 195, 231
BseYI	CCCAGC	2 cut(s)	686, 782
BshFI	GGCC	3 cut(s)	333, 440, 658
BshNI	GGYRCC	1 cut(s)	502
BsiHKAI	GWGCWC	2 cut(s)	233, 465
BsiSI	CCGG	3 cut(s)	226, 303, 335
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	2 cut(s)	417, 481
BsmAI	GTCTC	2 cut(s)	183, 418
BsmFI	GGGAC	1 cut(s)	799
BsnI	GGCC	3 cut(s)	333, 440, 658
Bso31I	GGTCTC	1 cut(s)	183
Bsp119I	TTCGAA	2 cut(s)	348, 716
Bsp1286I	GDGCHC	3 cut(s)	157, 233, 465
Bsp143I	GATC	3 cut(s)	352, 798, 847
BspACI	CCGC	4 cut(s)	23, 144, 411, 668
BspANI	GGCC	3 cut(s)	333, 440, 658
BspCNI	CTCAG	1 cut(s)	916
BspLI	GGNNCC	4 cut(s)	439, 504, 615, 930
BspMI	ACCTGC	1 cut(s)	937
BspT104I	TTCGAA	2 cut(s)	348, 716
BspT107I	GGYRCC	1 cut(s)	502
BspTNI	GGTCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	197, 910
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	3 cut(s)	352, 798, 847
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	3 cut(s)	152, 179, 589
Bst6I	CTCTTC	2 cut(s)	287, 789
BstBI	TTCGAA	2 cut(s)	348, 716
BstC8I	GCNNGC	2 cut(s)	465, 1034
BstDEI	CTNAG	1 cut(s)	924
BstF5I	GGATG	1 cut(s)	1048
BstKTI	GATC	3 cut(s)	355, 801, 850
BstMAI	GTCTC	2 cut(s)	183, 418
BstMBI	GATC	3 cut(s)	352, 798, 847
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 228, 312, 339, 788
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	2 cut(s)	391, 1036
BstSCI	CCNGG	3 cut(s)	301, 333, 480
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	3 cut(s)	12, 195, 231
BstV2I	GAAGAC	1 cut(s)	664
BsuRI	GGCC	3 cut(s)	333, 440, 658
BtsCI	GGATG	1 cut(s)	1048
BtsI	GCAGTG	1 cut(s)	1043
BtsIMutI	CAGTG	3 cut(s)	148, 585, 1043
BveI	ACCTGC	1 cut(s)	937
Cac8I	GCNNGC	2 cut(s)	465, 1034
CaiI	CAGNNNCTG	2 cut(s)	427, 481
Cfr13I	GGNCC	5 cut(s)	332, 438, 614, 656, 908
CseI	GACGC	2 cut(s)	284, 613
CviAII	CATG	4 cut(s)	388, 707, 1006, 1033
DdeI	CTNAG	1 cut(s)	924
DpnI	GATC	3 cut(s)	354, 800, 849
DpnII	GATC	3 cut(s)	352, 798, 847
DrdI	GACNNNNNNGTC	1 cut(s)	915
DseDI	GACNNNNNNGTC	1 cut(s)	915
Eam1104I	CTCTTC	2 cut(s)	287, 789
EarI	CTCTTC	2 cut(s)	287, 789
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	614, 908
Eco57I	CTGAAG	2 cut(s)	658, 813
EcoO109I	RGGNCCY	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	480
FaeI	CATG	4 cut(s)	391, 710, 1009, 1036
FaqI	GGGAC	1 cut(s)	799
FatI	CATG	4 cut(s)	387, 706, 1005, 1032
Fnu4HI	GCNGC	4 cut(s)	26, 184, 220, 411
FokI	GGATG	1 cut(s)	1035
Fsp4HI	GCNGC	4 cut(s)	26, 184, 220, 411
FspBI	CTAG	4 cut(s)	456, 723, 959, 987
GluI	GCNGC	4 cut(s)	26, 184, 220, 411
GsaI	CCCAGC	2 cut(s)	690, 786
HaeIII	GGCC	3 cut(s)	333, 440, 658
HapII	CCGG	3 cut(s)	226, 303, 335
HgaI	GACGC	2 cut(s)	284, 613
Hin1II	CATG	4 cut(s)	391, 710, 1009, 1036
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	7 cut(s)	236, 242, 248, 254, 877, 916, 1009
HpaII	CCGG	3 cut(s)	226, 303, 335
HphI	GGTGA	4 cut(s)	9, 133, 857, 961
Hpy166II	GTNNAC	3 cut(s)	9, 202, 367
Hpy188I	TCNGA	5 cut(s)	241, 247, 253, 259, 746
Hpy188III	TCNNGA	1 cut(s)	802
Hpy8I	GTNNAC	3 cut(s)	9, 202, 367
Hpy99I	CGWCG	4 cut(s)	278, 329, 385, 829
HpyAV	CCTTC	6 cut(s)	66, 99, 125, 323, 728, 985
HpyCH4III	ACNGT	3 cut(s)	152, 179, 589
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	3 cut(s)	4, 183, 1036
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 228, 312, 339, 788
HpyF3I	CTNAG	1 cut(s)	924
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	4 cut(s)	391, 710, 1009, 1036
Kzo9I	GATC	3 cut(s)	352, 798, 847
LmnI	GCTCC	4 cut(s)	228, 634, 727, 928
Lsp1109I	GCAGC	3 cut(s)	12, 195, 231
LweI	GCATC	1 cut(s)	838
MaeI	CTAG	4 cut(s)	456, 723, 959, 987
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	677
MalI	GATC	3 cut(s)	354, 800, 849
MboI	GATC	3 cut(s)	352, 798, 847
MboII	GAAGA	6 cut(s)	61, 274, 362, 664, 784, 806
MhlI	GDGCHC	3 cut(s)	157, 233, 465
MluCI	AATT	2 cut(s)	290, 747
MlyI	GAGTC	2 cut(s)	925, 1018
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	9 cut(s)	22, 30, 119, 296, 501, 537, 627, 919, 945
MseI	TTAA	3 cut(s)	750, 902, 998
MspA1I	CMGCKG	3 cut(s)	25, 782, 791
MspI	CCGG	3 cut(s)	226, 303, 335
MspR9I	CCNGG	3 cut(s)	303, 335, 482
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	5 cut(s)	152, 228, 312, 339, 788
NciI	CCSGG	2 cut(s)	303, 335
NdeII	GATC	3 cut(s)	352, 798, 847
NlaIII	CATG	4 cut(s)	391, 710, 1009, 1036
NlaIV	GGNNCC	4 cut(s)	439, 504, 615, 930
NspI	RCATGY	2 cut(s)	391, 1036
NspV	TTCGAA	2 cut(s)	348, 716
PaeI	GCATGC	1 cut(s)	1036
PaqCI	CACCTGC	1 cut(s)	937
PciI	ACATGT	1 cut(s)	387
PfeI	GAWTC	5 cut(s)	236, 242, 248, 254, 877
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	27, 185, 221, 412
PleI	GAGTC	2 cut(s)	924, 1017
PpsI	GAGTC	2 cut(s)	924, 1017
PpuMI	RGGWCCY	1 cut(s)	614
PscI	ACATGT	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	480
PspFI	CCCAGC	2 cut(s)	686, 782
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	4 cut(s)	439, 504, 615, 930
PspPI	GGNCC	5 cut(s)	332, 438, 614, 656, 908
PspPPI	RGGWCCY	1 cut(s)	614
PstNI	CAGNNNCTG	2 cut(s)	427, 481
PvuII	CAGCTG	2 cut(s)	782, 791
SaqAI	TTAA	3 cut(s)	750, 902, 998
SatI	GCNGC	4 cut(s)	26, 184, 220, 411
Sau3AI	GATC	3 cut(s)	352, 798, 847
Sau96I	GGNCC	5 cut(s)	332, 438, 614, 656, 908
SchI	GAGTC	2 cut(s)	925, 1018
ScrFI	CCNGG	3 cut(s)	303, 335, 482
SduI	GDGCHC	3 cut(s)	157, 233, 465
SfaNI	GCATC	1 cut(s)	838
SfuI	TTCGAA	2 cut(s)	348, 716
SinI	GGWCC	2 cut(s)	614, 908
SphI	GCATGC	1 cut(s)	1036
Sse9I	AATT	2 cut(s)	290, 747
SsiI	CCGC	4 cut(s)	23, 144, 411, 668
SspMI	CTAG	4 cut(s)	456, 723, 959, 987
StyD4I	CCNGG	3 cut(s)	301, 333, 480
TaaI	ACNGT	3 cut(s)	152, 179, 589
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	5 cut(s)	348, 383, 716, 801, 850
TasI	AATT	2 cut(s)	290, 747
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	5 cut(s)	236, 242, 248, 254, 877
Tru1I	TTAA	3 cut(s)	750, 902, 998
Tru9I	TTAA	3 cut(s)	750, 902, 998
TscAI	CASTG	3 cut(s)	155, 592, 1043
TseI	GCWGC	3 cut(s)	25, 183, 219
TspDTI	ATGAA	2 cut(s)	711, 925
TspRI	CASTG	3 cut(s)	155, 592, 1043
Van91I	CCANNNNNTGG	1 cut(s)	481
VpaK11BI	GGWCC	2 cut(s)	614, 908
XceI	RCATGY	2 cut(s)	391, 1036
XspI	CTAG	4 cut(s)	456, 723, 959, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.