Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005815

Physical Location & Seq

Genomic Coordinates Reverse (-)

70776577 .. 70781249

Gene Structure 4673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG486300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATTGCGGTCTTCAGTAACTCCGCTTGGCTGAATGAATATGACCATGATGGTTTGAAAGCTAGGGAGCTTGAAGGGGCTATTGGAATTAAAGTCATTAGGCATAGATTGAAGAAACCGGCTGGGACAGCTGAAGAGATCGAGAAGCATTTTGGTTGTAAGTCGTCGCATCTTATTATGGTGGGTGATCGACCCTTGACTGATATTGTGTATGGGAATCAAAATGGCTTTCTAACTATCTTAACTGGACCTTTGAGTCTTTCTGAGGAGCCATTCATTGTTAGGCAGCTCCATCATCAGTATCAACAGAGGGACTGGAAGCAGAGGGTCTCCTTAAATGGAGGCATAGCCCTGACAACCAAAACCAAGCTCTTATGTCTTCATGGGTTGGAAATAGTCCTTGCAACTGGACTGGAATTGCTTGCAATGAATTCAGAAGCATCACTAACATTAGCCTTTCTCACACTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

PGP_phosphatase

Protein Analysis

157

Amino Acids

17.42

Weight (kDa)

7.06

Isoelectric Point (pI)

23.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGP_phosphatase	PF09419	2 - 84	1.6e-20	Mitochondrial PGP phosphatase
Hydrolase_like	PF13242	40 - 82	9.5e-07	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58830 AT3G58830 AT3G58830
fragaria_vesca	FvH4_6g38130 FvH4_6g38130 FvH4_6g38130
malus_domestica	MD09G1152800.v1.1 MD17G1140200.v1.1
prunus_persica	Prupe.3G171400_v2.0.a1
pyrus_communis	pycom09g07240 pycom17g13330
rosa_chinensis	RchiOBHm_Chr2g0151351
rosa_laevigata	RLG00000020543
rosa_multiflora	Rmu_sc0002516.1_g000014
rosa_roxburghii	Rroxscaffold_2G00096520 Rroxscaffold_2G00096600
rosa_rugosa	Rorug02G0425400 Rorug02G0425400 Rorug02G0425500
rosa_samantha	Rh2AG486300 Rh2AG486600 Rh2BG498300 Rh2BG498800 Rh2CG472500 Rh2DG509100 Rh2DG509700
rosa_wichuraiana	Rw2G039840 Rw2G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	255
AciI	CCGC	2 cut(s)	8, 24
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	153
AgsI	TTSAA	3 cut(s)	58, 74, 112
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	5 cut(s)	62, 70, 131, 289, 370
AluI	AGCT	5 cut(s)	62, 70, 131, 289, 370
Alw26I	GTCTC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	248
BbsI	GAAGAC	2 cut(s)	4, 371
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	44, 300
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	270
BmsI	GCATC	2 cut(s)	178, 449
BpiI	GAAGAC	2 cut(s)	4, 371
BsaI	GGTCTC	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	5 cut(s)	250, 320, 412, 417, 471
Bse3DI	GCAATG	1 cut(s)	432
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	5 cut(s)	250, 320, 412, 417, 471
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	139, 326
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	139, 326
Bso31I	GGTCTC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	138, 187
BspACI	CCGC	2 cut(s)	8, 24
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	5 cut(s)	250, 320, 412, 417, 471
BssAI	RCCGGY	1 cut(s)	118
BssMI	GATC	2 cut(s)	138, 187
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	1 cut(s)	264
BstKTI	GATC	2 cut(s)	141, 190
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	138, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	2 cut(s)	4, 371
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	423
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	248
CviAII	CATG	2 cut(s)	47, 383
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	140, 189
DpnII	GATC	2 cut(s)	138, 187
DrdI	GACNNNNNNGTC	1 cut(s)	255
DseDI	GACNNNNNNGTC	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	430
FaeI	CATG	2 cut(s)	50, 386
FaiI	YATR	8 cut(s)	42, 48, 105, 179, 213, 347, 376, 384
FaqI	GGGAC	2 cut(s)	139, 326
FatI	CATG	2 cut(s)	46, 382
Fnu4HI	GCNGC	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	287
GsaI	CCCAGC	1 cut(s)	126
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	2 cut(s)	50, 386
HinfI	GANTC	2 cut(s)	217, 256
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	265, 436
Hpy188III	TCNNGA	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	404, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	50, 386
Kzo9I	GATC	2 cut(s)	138, 187
LmnI	GCTCC	3 cut(s)	67, 268, 294
LpnPI	CCDG	8 cut(s)	108, 132, 231, 301, 365, 393, 398, 452
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	178, 449
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	140, 189
MboI	GATC	2 cut(s)	138, 187
MboII	GAAGA	4 cut(s)	4, 124, 146, 371
MluCI	AATT	3 cut(s)	87, 416, 430
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	4 cut(s)	259, 303, 318, 335
MseI	TTAA	4 cut(s)	90, 242, 335, 472
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	2 cut(s)	138, 187
NlaIII	CATG	2 cut(s)	50, 386
NlaIV	GGNNCC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	90, 242, 335, 472
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	2 cut(s)	138, 187
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	265
SetI	ASST	6 cut(s)	64, 72, 133, 253, 291, 372
SfaNI	GCATC	2 cut(s)	178, 449
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	3 cut(s)	87, 416, 430
SsiI	CCGC	2 cut(s)	8, 24
SspMI	CTAG	1 cut(s)	63
TaqI	TCGA	2 cut(s)	141, 190
TasI	AATT	3 cut(s)	87, 416, 430
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	4 cut(s)	90, 242, 335, 472
Tru9I	TTAA	4 cut(s)	90, 242, 335, 472
TscAI	CASTG	1 cut(s)	471
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	4 cut(s)	51, 265, 371, 443
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	430
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.