Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008040

Physical Location & Seq

Genomic Coordinates Forward (+)

22645492 .. 22647765

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAATCAATCGATCCCTTCTACCGTATCTTCTTCTCCGACGACTGATACGATGGACGCTTCGCCGCTTCTTGGCCGGAACAGACGTAACCGCCCACGGTCCTCTCAGCCGATTCGTGGCGCGGCGTCGAGACTTCTCCGCCGTGCTAGCAACCGCCGGATGATGCTCCGTGAGCCCTCCGTTCGAGTCCGTGAGGTGGCGGCTGAGCAGCTTGAGGAACGGCAGAGTCAATGGGCTTACTCTAAACCCATTATAGTTCTCGATATACTTTGGAATTTCCTATTTGTGATTGTTTCAATCGCGATTCTAGGGTTTAGTTCTGATGAAGATCCTGATGTTCCTCTTAGGTTGTGGATCATTGGGTATAATGTTCAGTGTTTGTTTCATGTTGGATGTGTCATTGCTGAGTATAAACGTCGCCGTGTTGCTAATTCTCCTCCTCCTAGTGGTGAAGATTCCTCCAATCACGAGTCTCTTAGCGGAAGTGAAGATGAATCTGATGGCTATAGCATTAACAACACTGATGATGATGACCATGGAACTAGTTTCACTAAGCACCTTGAATCTGCGAATACCATGTTCTCTTTTGTGTGGTGGATCATCGGGTTTTACTGGGTGACGGCTGATACCGAGGCACTAGCTCAATCTTCGCCACAACTCTACTGGCTCTGTGTTGCATTCCTTGCGTTTGATGTTATGTTTGTTGTCATTTGCGTAGCGGTTGCTAGTCTTATTGGTATTGCTGTTTGTTGCTGTTTACCTTGCATCATTGCGATCTTGTACGCATTAGCAGATCAGGAAGGTGCACCGGATGAAGAGATAGAGAGGCTTTTAAAATTCAAGTTTCTCACAGTAAAGAATTCTGAGAAAGTGAATGGCGAAATACGGGAAACTCAAGGAGGGATAATGACTGGATTAGATACCGAGTCTCAAACCGAACGTATGTTATTAAGCGAAGATGCTGAATGCAGCATTTGTCTATGTGCTTATGAAGATGGAGTAGAACTAAGGGAGCTTCCTTGTAGACACCATTTTCACAGTTTATGTGTAGACAAATGGCTAAGGATCAACGCTACTTGCCCTCTCTGCAAATTCAATATCCTCAAAAATGGTGAACCTAGTGGCAGTGAACAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

379

Amino Acids

42.49

Weight (kDa)

4.99

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	322 - 364	2.5e-14	Ring finger domain
zf-RING_11	PF17123	322 - 350	3e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	322 - 363	5.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	323 - 363	6.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	323 - 364	4.9e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61180
fragaria_vesca	FvH4_3g08230
malus_domestica	MD01G1049700.v1.1 MD05G1306100.v1.1 MD07G1126700.v1.1 MD07G1126800.v1.1 MD10G1285100.v1.1
prunus_persica	Prupe.2G157200_v2.0.a1 Prupe.4G056500_v2.0.a1
pyrus_communis	pycom01g07470 pycom05g28320 pycom07g12230 pycom07g12310 pycom10g23820
rosa_chinensis	RchiOBHm_Chr5g0009921
rosa_laevigata	RLG00000031710
rosa_multiflora	Rmu_sc0001709.1_g000014
rosa_roxburghii	Rroxscaffold_1G00066260
rosa_rugosa	Rorug04G0446900
rosa_samantha	Rh5AG078500 Rh5BG073400 Rh5CG085800 Rh5DG073900
rosa_wichuraiana	Rw5G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	1024, 1050
AccII	CGCG	2 cut(s)	122, 302
AciI	CCGC	8 cut(s)	65, 91, 122, 139, 154, 200, 480, 719
AclWI	GGATC	5 cut(s)	7, 323, 362, 605, 1073
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	4 cut(s)	274, 836, 859, 1091
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	4 cut(s)	71, 116, 196, 446
AgsI	TTSAA	4 cut(s)	297, 563, 841, 1096
AhlI	ACTAGT	1 cut(s)	542
AluBI	AGCT	3 cut(s)	211, 641, 1015
AluI	AGCT	3 cut(s)	211, 641, 1015
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	3 cut(s)	124, 477, 933
Alw44I	GTGCAC	1 cut(s)	804
AlwI	GGATC	5 cut(s)	7, 323, 362, 605, 1073
AoxI	GGCC	1 cut(s)	73
ApaLI	GTGCAC	1 cut(s)	804
ApeKI	GCWGC	2 cut(s)	208, 969
ApoI	RAATTY	4 cut(s)	274, 836, 859, 1091
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	3 cut(s)	461, 628, 1124
AsuNHI	GCTAGC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	808
BbvI	GCAGC	2 cut(s)	220, 981
BccI	CCATC	3 cut(s)	46, 494, 989
BceAI	ACGGC	4 cut(s)	126, 236, 405, 636
BcoDI	GTCTC	3 cut(s)	124, 477, 933
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	7 cut(s)	147, 308, 444, 543, 638, 726, 1119
BfmI	CTRYAG	1 cut(s)	505
BisI	GCNGC	5 cut(s)	65, 123, 201, 209, 970
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	5 cut(s)	66, 124, 202, 210, 971
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	622
BmsI	GCATC	3 cut(s)	153, 774, 949
BmtI	GCTAGC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	622
Bpu10I	CCTNAGC	1 cut(s)	1061
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	2 cut(s)	233, 879
Bsa29I	ATCGAT	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	95, 535, 630
BsaWI	WCCGGW	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 116, 196, 446
Bse1I	ACTGG	3 cut(s)	617, 668, 916
Bse3DI	GCAATG	2 cut(s)	399, 768
Bse8I	GATNNNNATC	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	3 cut(s)	95, 535, 630
BseGI	GGATG	3 cut(s)	165, 398, 817
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	4 cut(s)	71, 116, 196, 446
BseMI	GCAATG	2 cut(s)	399, 768
BseMII	CTCAG	4 cut(s)	119, 195, 396, 855
BseNI	ACTGG	3 cut(s)	617, 668, 916
BseRI	GAGGAG	2 cut(s)	426, 429
BseSI	GKGCMC	1 cut(s)	808
BseXI	GCAGC	2 cut(s)	220, 981
Bsh1236I	CGCG	2 cut(s)	122, 302
BshFI	GGCC	1 cut(s)	75
BshVI	ATCGAT	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	808
BsiSI	CCGG	3 cut(s)	76, 157, 809
BslI	CCNNNNNNNGG	4 cut(s)	71, 116, 196, 446
BsmAI	GTCTC	3 cut(s)	124, 477, 933
BsmI	GAATGC	2 cut(s)	677, 971
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	177, 808
Bsp143I	GATC	7 cut(s)	12, 328, 354, 597, 774, 793, 1065
Bsp1720I	GCTNAGC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	535
Bsp68I	TCGCGA	1 cut(s)	302
BspACI	CCGC	8 cut(s)	65, 91, 122, 139, 154, 200, 480, 719
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	4 cut(s)	118, 196, 397, 856
BspDI	ATCGAT	1 cut(s)	11
BspFNI	CGCG	2 cut(s)	122, 302
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	5 cut(s)	7, 323, 362, 605, 1073
BsrDI	GCAATG	2 cut(s)	399, 768
BsrI	ACTGG	3 cut(s)	617, 668, 916
BssECI	CCNNGG	3 cut(s)	95, 535, 630
BssMI	GATC	7 cut(s)	12, 328, 354, 597, 774, 793, 1065
BssNI	GRCGYC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	535
Bst2BI	CACGAG	1 cut(s)	467
Bst4CI	ACNGT	4 cut(s)	25, 99, 853, 1040
Bst6I	CTCTTC	1 cut(s)	810
BstACI	GRCGYC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	9 cut(s)	105, 204, 344, 405, 476, 552, 864, 1007, 1061
BstDSI	CCRYGG	2 cut(s)	95, 535
BstF5I	GGATG	3 cut(s)	165, 398, 817
BstFNI	CGCG	2 cut(s)	122, 302
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	7 cut(s)	15, 331, 357, 600, 777, 796, 1068
BstMAI	GTCTC	3 cut(s)	124, 477, 933
BstMBI	GATC	7 cut(s)	12, 328, 354, 597, 774, 793, 1065
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 172, 683, 1086
BstSFI	CTRYAG	1 cut(s)	505
BstSLI	GKGCMC	1 cut(s)	808
BstUI	CGCG	2 cut(s)	122, 302
BstV1I	GCAGC	2 cut(s)	220, 981
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
Bsu15I	ATCGAT	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	75
BsuTUI	ATCGAT	1 cut(s)	11
BtgI	CCRYGG	2 cut(s)	95, 535
BtsCI	GGATG	3 cut(s)	165, 398, 817
BtsI	GCAGTG	1 cut(s)	1132
BtsIMutI	CAGTG	3 cut(s)	380, 519, 1132
BtuMI	TCGCGA	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	148
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	99
ClaI	ATCGAT	1 cut(s)	11
CseI	GACGC	2 cut(s)	65, 114
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	3 cut(s)	386, 536, 577
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	9 cut(s)	105, 204, 344, 405, 476, 552, 864, 1007, 1061
DpnI	GATC	7 cut(s)	14, 330, 356, 599, 776, 795, 1067
DpnII	GATC	7 cut(s)	12, 328, 354, 597, 774, 793, 1065
DraI	TTTAAA	1 cut(s)	834
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	810
EarI	CTCTTC	1 cut(s)	810
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	99
EcoRI	GAATTC	1 cut(s)	859
EcoT14I	CCWWGG	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	3 cut(s)	389, 539, 580
FatI	CATG	3 cut(s)	385, 535, 576
FblI	GTMKAC	2 cut(s)	1024, 1050
Fnu4HI	GCNGC	5 cut(s)	65, 123, 201, 209, 970
FokI	GGATG	3 cut(s)	172, 405, 824
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	5 cut(s)	65, 123, 201, 209, 970
FspBI	CTAG	7 cut(s)	147, 308, 444, 543, 638, 726, 1119
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	5 cut(s)	65, 123, 201, 209, 970
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	3 cut(s)	76, 157, 809
HgaI	GACGC	2 cut(s)	65, 114
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	3 cut(s)	389, 539, 580
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HpaII	CCGG	3 cut(s)	76, 157, 809
HphI	GGTGA	3 cut(s)	461, 628, 1124
Hpy166II	GTNNAC	6 cut(s)	758, 806, 1025, 1051, 1115, 1130
Hpy188I	TCNGA	4 cut(s)	39, 322, 499, 865
Hpy188III	TCNNGA	6 cut(s)	129, 260, 301, 332, 467, 797
Hpy8I	GTNNAC	6 cut(s)	758, 806, 1025, 1051, 1115, 1130
Hpy99I	CGWCG	3 cut(s)	43, 130, 420
HpyAV	CCTTC	2 cut(s)	27, 794
HpyCH4III	ACNGT	4 cut(s)	25, 99, 853, 1040
HpyCH4IV	ACGT	3 cut(s)	85, 415, 940
HpyCH4V	TGCA	5 cut(s)	677, 765, 806, 969, 1089
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 172, 683, 1086
HpyF3I	CTNAG	9 cut(s)	105, 204, 344, 405, 476, 552, 864, 1007, 1061
HpySE526I	ACGT	3 cut(s)	85, 415, 940
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	389, 539, 580
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	7 cut(s)	12, 328, 354, 597, 774, 793, 1065
LmnI	GCTCC	2 cut(s)	171, 1012
LpnPI	CCDG	8 cut(s)	89, 170, 345, 598, 649, 782, 822, 897
Lsp1109I	GCAGC	2 cut(s)	220, 981
LweI	GCATC	3 cut(s)	153, 774, 949
MaeI	CTAG	7 cut(s)	147, 308, 444, 543, 638, 726, 1119
MaeII	ACGT	3 cut(s)	85, 415, 940
MaeIII	GTNAC	2 cut(s)	86, 616
MalI	GATC	7 cut(s)	14, 330, 356, 599, 776, 795, 1067
MboI	GATC	7 cut(s)	12, 328, 354, 597, 774, 793, 1065
MboII	GAAGA	9 cut(s)	21, 24, 338, 464, 500, 639, 827, 968, 1004
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	177, 808
MluCI	AATT	5 cut(s)	274, 430, 836, 859, 1091
MlyI	GAGTC	4 cut(s)	195, 235, 479, 935
MmeI	TCCRAC	2 cut(s)	62, 370
MseI	TTAA	3 cut(s)	513, 833, 950
MspI	CCGG	3 cut(s)	76, 157, 809
Mva1269I	GAATGC	2 cut(s)	677, 971
MvnI	CGCG	2 cut(s)	122, 302
MwoI	GCNNNNNNNGC	4 cut(s)	147, 172, 683, 1086
NcoI	CCATGG	1 cut(s)	535
NdeII	GATC	7 cut(s)	12, 328, 354, 597, 774, 793, 1065
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	3 cut(s)	389, 539, 580
NmuCI	GTSAC	1 cut(s)	616
NruI	TCGCGA	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	2 cut(s)	677, 971
PfeI	GAWTC	6 cut(s)	4, 112, 304, 455, 494, 563
PkrI	GCNGC	5 cut(s)	66, 124, 202, 210, 971
PleI	GAGTC	4 cut(s)	194, 234, 478, 934
PpsI	GAGTC	4 cut(s)	194, 234, 478, 934
PspPI	GGNCC	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	328
RruI	TCGCGA	1 cut(s)	302
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
SaqAI	TTAA	3 cut(s)	513, 833, 950
SatI	GCNGC	5 cut(s)	65, 123, 201, 209, 970
Sau3AI	GATC	7 cut(s)	12, 328, 354, 597, 774, 793, 1065
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	4 cut(s)	195, 235, 479, 935
SduI	GDGCHC	2 cut(s)	177, 808
SfaNI	GCATC	3 cut(s)	153, 774, 949
SfcI	CTRYAG	1 cut(s)	505
SinI	GGWCC	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	212, 894
SmoI	CTYRAG	2 cut(s)	212, 894
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	5 cut(s)	274, 430, 836, 859, 1091
SsiI	CCGC	8 cut(s)	65, 91, 122, 139, 154, 200, 480, 719
SspMI	CTAG	7 cut(s)	147, 308, 444, 543, 638, 726, 1119
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	4 cut(s)	25, 99, 853, 1040
TaiI	ACGT	3 cut(s)	88, 418, 943
TaqI	TCGA	4 cut(s)	11, 128, 184, 261
TasI	AATT	5 cut(s)	274, 430, 836, 859, 1091
TauI	GCSGC	3 cut(s)	67, 125, 203
TfiI	GAWTC	6 cut(s)	4, 112, 304, 455, 494, 563
Tru1I	TTAA	3 cut(s)	513, 833, 950
Tru9I	TTAA	3 cut(s)	513, 833, 950
TscAI	CASTG	3 cut(s)	380, 526, 1132
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	2 cut(s)	208, 969
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	6 cut(s)	17, 339, 374, 507, 828, 1005
TspGWI	ACGGA	3 cut(s)	158, 169, 179
TspRI	CASTG	3 cut(s)	380, 526, 1132
VneI	GTGCAC	1 cut(s)	804
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	4 cut(s)	274, 836, 859, 1091
XcmI	CCANNNNNNNNNTGG	1 cut(s)	660
XmiI	GTMKAC	2 cut(s)	1024, 1050
XspI	CTAG	7 cut(s)	147, 308, 444, 543, 638, 726, 1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.