Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008040

Physical Location & Seq

Genomic Coordinates Reverse (-)

4824184 .. 4827339

Gene Structure 3156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTTCAGCTCAACCCAACACCCCCCTTCTCCCTCCGACGCCGCATCCTCCCCGCTCCTCAGCACCTCCATCGCCGACAACCTCCTCCGCAGCCGCCGCCTCATCCGCCAGCCCCCGCGCCCCCTCCGCGGCGCCGCACGCTTCCTCCGCCGCGCCAGCGGCCGCCGCATGAGGCTTCGGGAGCCTTCCGTCCGGGTCCGCGAGTCCGCGGCGGAGCAGCTGGAGGAGCGCCAGAGTGATTGGGCCTACTCCAGGCCCATTGTGGTGCTTGACCTGCTCTGGAACGCCGTCCTGCTCGTGATTGCGCTCGCCGTGCTTTGGTTCAGCTATGAAGAGAGCCCTGAGGTTCCTCTGAGGGTGTGGATTGGCGGATACGCGCTGCAGTGCGCGGTGCATATGTTCTGCGTGGGGGTGGAGTGCACGCGGCGGAGGCGCGTGGGAGAGGTGGGGGAGGCGGCGGTGGCGGTGGAGGAAGGGAGTCCTCGGTGGGAGAGTTTCTCTGGTTCTGGGAGTGATGAGAGTGAAGATTACGGAATGGAGCAGAGTTTGGAATATAGTGCCACAAGTTTTGCAAAGAATTTGGAGTCTGCGAACACGATGTTTTCGTTTATCTGGTGGATTCTTGGGTTCTACTGGGTGACTGCTGGTGGTGAAAGTTTGACGACTGACTCTCCTCAATTATACTGGATTACTATCACTTTTCTGGCTTTGGATGTTGTTTTTGTGGTGATTTGTGTTGCCGTTGCATCCCTCATTGGTATAGCTGTTTGCTTCTGTCTGCCATGCATCATTGCCATCTTATATGTCGTTACAGATCAGGAAGGAGCAACTAAGGAAGAGATCGATCATTTGCCAAAGTACAAGTTCCGCAAGATATCTGATTTTGAGAAAGTTAATGGTGAAATCCAAGAGTCTTCTGGAGGAATTATGACCGAATGTGACACTGATGCACCAACGGAACATGCTCTCTCCCAAGAAGATGCTGAATGCTGCATCTGCCTTTGTGCCTATGATGATGGAACTGAACTTCGTGAGCTTCCTTGCCGTCATCATTTTCACTGCACCTGCATAGACAAATGGTTACAAATCAACGCCACCTGCCCACTCTGCAAGTTTAACATTCTGAAGTCTGCTGGCCAGAGTAGCAGTGACGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

387

Amino Acids

43.12

Weight (kDa)

4.97

Isoelectric Point (pI)

67.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	329 - 371	1e-13	Ring finger domain
zf-RING_11	PF17123	329 - 357	3.2e-07	RING-like zinc finger
zf-rbx1	PF12678	329 - 371	1.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61180
fragaria_vesca	FvH4_3g08230
malus_domestica	MD01G1049700.v1.1 MD05G1306100.v1.1 MD07G1126700.v1.1 MD07G1126800.v1.1 MD10G1285100.v1.1
prunus_persica	Prupe.2G157200_v2.0.a1 Prupe.4G056500_v2.0.a1
pyrus_communis	pycom01g07470 pycom05g28320 pycom07g12230 pycom07g12310 pycom10g23820
rosa_chinensis	RchiOBHm_Chr5g0009921
rosa_laevigata	RLG00000031710
rosa_multiflora	Rmu_sc0001709.1_g000014
rosa_roxburghii	Rroxscaffold_1G00066260
rosa_rugosa	Rorug04G0446900
rosa_samantha	Rh5AG078500 Rh5BG073400 Rh5CG085800 Rh5DG073900
rosa_wichuraiana	Rw5G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1073, 1106
Acc36I	ACCTGC	3 cut(s)	282, 1073, 1106
AccB1I	GGYRCC	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	55
AccII	CGCG	9 cut(s)	118, 129, 153, 201, 209, 377, 389, 424, 435
AcoI	YGGCCR	2 cut(s)	160, 1135
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	1145
AcyI	GRCGYC	2 cut(s)	39, 132
AfaI	GTAC	1 cut(s)	860
AfiI	CCNNNNNNNGG	3 cut(s)	128, 252, 318
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	5 cut(s)	9, 220, 327, 764, 1036
AluI	AGCT	5 cut(s)	9, 220, 327, 764, 1036
Alw21I	GWGCWC	1 cut(s)	422
Alw44I	GTGCAC	1 cut(s)	418
AoxI	GGCC	4 cut(s)	160, 243, 254, 1135
ApaLI	GTGCAC	1 cut(s)	418
ApeKI	GCWGC	4 cut(s)	90, 217, 379, 990
ApoI	RAATTY	1 cut(s)	577
AspLEI	GCGC	8 cut(s)	120, 134, 155, 231, 307, 379, 389, 435
AspS9I	GGNCC	3 cut(s)	196, 243, 255
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	4 cut(s)	649, 662, 739, 911
AvaII	GGWCC	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	1137
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	341
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	906
Bbv12I	GWGCWC	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	4 cut(s)	102, 229, 366, 977
BccI	CCATC	3 cut(s)	77, 803, 1010
BceAI	ACGGC	4 cut(s)	272, 296, 725, 1029
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	1 cut(s)	253
BciVI	GTATCC	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	380
BfoI	RGCGCY	2 cut(s)	135, 232
BfuAI	ACCTGC	3 cut(s)	282, 1073, 1106
BfuI	GTATCC	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	194, 253
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	3 cut(s)	196, 243, 255
BmiI	GGNNCC	4 cut(s)	133, 183, 197, 348
BmrFI	CCNGG	2 cut(s)	194, 253
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	6 cut(s)	53, 755, 795, 937, 970, 1002
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	906
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpmI	CTGGAG	3 cut(s)	235, 242, 939
Bpu10I	CCTNAGC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	843
BsaBI	GATNNNNATC	1 cut(s)	692
BsaHI	GRCGYC	2 cut(s)	39, 132
BsaJI	CCNNGG	3 cut(s)	127, 207, 482
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 655, 685
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 252, 318
Bse1I	ACTGG	2 cut(s)	638, 689
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	789
Bse8I	GATNNNNATC	1 cut(s)	692
BseBI	CCWGG	1 cut(s)	253
BseCI	ATCGAT	1 cut(s)	843
BseDI	CCNNGG	3 cut(s)	127, 207, 482
BseGI	GGATG	4 cut(s)	44, 102, 718, 746
BseJI	GATNNNNATC	1 cut(s)	692
BseLI	CCNNNNNNNGG	3 cut(s)	128, 252, 318
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	3 cut(s)	73, 333, 344
BseNI	ACTGG	2 cut(s)	638, 689
BseRI	GAGGAG	4 cut(s)	47, 74, 239, 663
BseSI	GKGCMC	1 cut(s)	422
BseX3I	CGGCCG	1 cut(s)	160
BseXI	GCAGC	4 cut(s)	102, 229, 366, 977
BsgI	GTGCAG	1 cut(s)	1045
Bsh1236I	CGCG	9 cut(s)	118, 129, 153, 201, 209, 377, 389, 424, 435
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	4 cut(s)	162, 245, 256, 1137
BshNI	GGYRCC	1 cut(s)	131
BshVI	ATCGAT	1 cut(s)	843
BsiEI	CGRYCG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	3 cut(s)	128, 252, 318
BsmI	GAATGC	1 cut(s)	992
BsnI	GGCC	4 cut(s)	162, 245, 256, 1137
Bsp1286I	GDGCHC	2 cut(s)	341, 422
Bsp143I	GATC	3 cut(s)	814, 840, 844
BspANI	GGCC	4 cut(s)	162, 245, 256, 1137
BspCNI	CTCAG	3 cut(s)	72, 334, 345
BspDI	ATCGAT	1 cut(s)	843
BspFNI	CGCG	9 cut(s)	118, 129, 153, 201, 209, 377, 389, 424, 435
BspLI	GGNNCC	4 cut(s)	133, 183, 197, 348
BspMAI	CTGCAG	1 cut(s)	384
BspMI	ACCTGC	3 cut(s)	282, 1073, 1106
BspT107I	GGYRCC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	2 cut(s)	638, 689
BssECI	CCNNGG	3 cut(s)	127, 207, 482
BssMI	GATC	3 cut(s)	814, 840, 844
BssNI	GRCGYC	2 cut(s)	39, 132
BssSI	CACGAG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	253
Bst6I	CTCTTC	2 cut(s)	327, 831
BstACI	GRCGYC	2 cut(s)	39, 132
BstC8I	GCNNGC	6 cut(s)	110, 139, 157, 309, 422, 1135
BstDEI	CTNAG	4 cut(s)	59, 342, 353, 831
BstDSI	CCRYGG	2 cut(s)	127, 207
BstENI	CCTNNNNNAGG	1 cut(s)	250
BstF5I	GGATG	4 cut(s)	44, 102, 718, 746
BstFNI	CGCG	9 cut(s)	118, 129, 153, 201, 209, 377, 389, 424, 435
BstH2I	RGCGCY	2 cut(s)	135, 232
BstHHI	GCGC	8 cut(s)	120, 134, 155, 231, 307, 379, 389, 435
BstKTI	GATC	3 cut(s)	817, 843, 847
BstMBI	GATC	3 cut(s)	814, 840, 844
BstMCI	CGRYCG	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	965
BstSCI	CCNGG	2 cut(s)	192, 251
BstSFI	CTRYAG	1 cut(s)	380
BstSLI	GKGCMC	1 cut(s)	422
BstUI	CGCG	9 cut(s)	118, 129, 153, 201, 209, 377, 389, 424, 435
BstV1I	GCAGC	4 cut(s)	102, 229, 366, 977
BstV2I	GAAGAC	1 cut(s)	906
BstZI	CGGCCG	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	843
Bsu36I	CCTNAGG	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	4 cut(s)	162, 245, 256, 1137
BsuTUI	ATCGAT	1 cut(s)	843
BtgI	CCRYGG	2 cut(s)	127, 207
BtgZI	GCGATG	1 cut(s)	55
BtsCI	GGATG	4 cut(s)	44, 102, 718, 746
BtsI	GCAGTG	3 cut(s)	389, 1057, 1153
BtsIMutI	CAGTG	4 cut(s)	389, 942, 1057, 1153
BveI	ACCTGC	3 cut(s)	282, 1073, 1106
Cac8I	GCNNGC	6 cut(s)	110, 139, 157, 309, 422, 1135
CciNI	GCGGCCGC	1 cut(s)	160
CfoI	GCGC	8 cut(s)	120, 134, 155, 231, 307, 379, 389, 435
Cfr13I	GGNCC	3 cut(s)	196, 243, 255
Cfr42I	CCGCGG	2 cut(s)	130, 210
ClaI	ATCGAT	1 cut(s)	843
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	859
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	3 cut(s)	169, 783, 962
CviQI	GTAC	1 cut(s)	859
DdeI	CTNAG	4 cut(s)	59, 342, 353, 831
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	3 cut(s)	816, 842, 846
DpnII	GATC	3 cut(s)	814, 840, 844
EaeI	YGGCCR	2 cut(s)	160, 1135
EagI	CGGCCG	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	327, 831
EarI	CTCTTC	2 cut(s)	327, 831
EciI	GGCGGA	5 cut(s)	95, 137, 227, 384, 442
EclXI	CGGCCG	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	341
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	1 cut(s)	196
Eco52I	CGGCCG	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	1145
Eco81I	CCTNAGG	1 cut(s)	342
EcoNI	CCTNNNNNAGG	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	251
EcoRV	GATATC	1 cut(s)	876
EcoT22I	ATGCAT	1 cut(s)	788
EcoT38I	GRGCYC	1 cut(s)	341
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
FaeI	CATG	3 cut(s)	172, 786, 965
FatI	CATG	3 cut(s)	168, 782, 961
FauI	CCCGC	2 cut(s)	60, 123
FauNDI	CATATG	1 cut(s)	396
FokI	GGATG	4 cut(s)	31, 89, 725, 733
FriOI	GRGCYC	1 cut(s)	341
GlaI	GCGC	8 cut(s)	119, 133, 154, 230, 306, 378, 388, 434
GsuI	CTGGAG	3 cut(s)	235, 242, 939
HaeII	RGCGCY	2 cut(s)	135, 232
HaeIII	GGCC	4 cut(s)	162, 245, 256, 1137
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	8 cut(s)	120, 134, 155, 231, 307, 379, 389, 435
Hin1I	GRCGYC	2 cut(s)	39, 132
Hin1II	CATG	3 cut(s)	172, 786, 965
Hin6I	GCGC	8 cut(s)	118, 132, 153, 229, 305, 377, 387, 433
HinP1I	GCGC	8 cut(s)	118, 132, 153, 229, 305, 377, 387, 433
HinfI	GANTC	6 cut(s)	203, 478, 584, 619, 668, 911
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	4 cut(s)	649, 662, 739, 911
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	37, 354, 880, 1125
Hpy188III	TCNNGA	6 cut(s)	179, 280, 298, 818, 918, 1031
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	36, 195, 467, 815
HpyF3I	CTNAG	4 cut(s)	59, 342, 353, 831
Hsp92I	GRCGYC	2 cut(s)	39, 132
Hsp92II	CATG	3 cut(s)	172, 786, 965
HspAI	GCGC	8 cut(s)	118, 132, 153, 229, 305, 377, 387, 433
KasI	GGCGCC	1 cut(s)	131
KspI	CCGCGG	2 cut(s)	130, 210
Kzo9I	GATC	3 cut(s)	814, 840, 844
LmnI	GCTCC	6 cut(s)	60, 181, 214, 226, 538, 824
Lsp1109I	GCAGC	4 cut(s)	102, 229, 366, 977
LweI	GCATC	6 cut(s)	53, 755, 795, 937, 970, 1002
MaeIII	GTNAC	5 cut(s)	637, 808, 938, 1080, 1148
MalI	GATC	3 cut(s)	816, 842, 846
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	3 cut(s)	814, 840, 844
MboII	GAAGA	5 cut(s)	344, 536, 848, 906, 989
MhlI	GDGCHC	2 cut(s)	341, 422
MlsI	TGGCCA	1 cut(s)	1137
MluCI	AATT	3 cut(s)	577, 677, 924
MluNI	TGGCCA	1 cut(s)	1137
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	5 cut(s)	212, 487, 593, 662, 920
MmeI	TCCRAC	1 cut(s)	60
Mox20I	TGGCCA	1 cut(s)	1137
Mph1103I	ATGCAT	1 cut(s)	788
MscI	TGGCCA	1 cut(s)	1137
MseI	TTAA	2 cut(s)	894, 1116
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	1137
MspA1I	CMGCKG	4 cut(s)	129, 159, 209, 220
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	2 cut(s)	194, 253
Mva1269I	GAATGC	1 cut(s)	992
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	9 cut(s)	118, 129, 153, 201, 209, 377, 389, 424, 435
NarI	GGCGCC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	194
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	3 cut(s)	814, 840, 844
NlaIII	CATG	3 cut(s)	172, 786, 965
NlaIV	GGNNCC	4 cut(s)	133, 183, 197, 348
NmuCI	GTSAC	3 cut(s)	637, 938, 1148
NotI	GCGGCCGC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	788
NspI	RCATGY	1 cut(s)	965
PaqCI	CACCTGC	2 cut(s)	1073, 1106
PcsI	WCGNNNNNNNCGW	1 cut(s)	602
PctI	GAATGC	1 cut(s)	992
PfeI	GAWTC	1 cut(s)	619
PleI	GAGTC	5 cut(s)	211, 486, 592, 662, 919
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	5 cut(s)	211, 486, 592, 662, 919
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	4 cut(s)	133, 183, 197, 348
PspPI	GGNCC	3 cut(s)	196, 243, 255
PstI	CTGCAG	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	860
RsaNI	GTAC	1 cut(s)	859
RseI	CAYNNNNRTG	1 cut(s)	263
SacII	CCGCGG	2 cut(s)	130, 210
SaqAI	TTAA	2 cut(s)	894, 1116
Sau3AI	GATC	3 cut(s)	814, 840, 844
Sau96I	GGNCC	3 cut(s)	196, 243, 255
SchI	GAGTC	5 cut(s)	212, 487, 593, 662, 920
ScrFI	CCNGG	2 cut(s)	194, 253
SduI	GDGCHC	2 cut(s)	341, 422
SfaNI	GCATC	6 cut(s)	53, 755, 795, 937, 970, 1002
SfcI	CTRYAG	1 cut(s)	380
SfoI	GGCGCC	1 cut(s)	133
Sfr303I	CCGCGG	2 cut(s)	130, 210
SgrBI	CCGCGG	2 cut(s)	130, 210
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	577, 677, 924
SspDI	GGCGCC	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	192, 251
TaqI	TCGA	1 cut(s)	843
TaqII	GACCGA	1 cut(s)	947
TasI	AATT	3 cut(s)	577, 677, 924
TatI	WGTACW	1 cut(s)	858
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	2 cut(s)	894, 1116
Tru9I	TTAA	2 cut(s)	894, 1116
TscAI	CASTG	4 cut(s)	389, 949, 1064, 1153
TseFI	GTSAC	3 cut(s)	637, 938, 1148
TseI	GCWGC	4 cut(s)	90, 217, 379, 990
Tsp45I	GTSAC	3 cut(s)	637, 938, 1148
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	3 cut(s)	178, 546, 971
TspRI	CASTG	4 cut(s)	389, 949, 1064, 1153
VneI	GTGCAC	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	196
XagI	CCTNNNNNAGG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	1 cut(s)	965
XcmI	CCANNNNNNNNNTGG	2 cut(s)	259, 914
Zsp2I	ATGCAT	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.