E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G61180 |
| fragaria_vesca | FvH4_3g08230 |
| malus_domestica | MD01G1049700.v1.1 MD05G1306100.v1.1 MD07G1126700.v1.1 MD07G1126800.v1.1 MD10G1285100.v1.1 |
| prunus_persica | Prupe.2G157200_v2.0.a1 Prupe.4G056500_v2.0.a1 |
| pyrus_communis | pycom01g07470 pycom05g28320 pycom07g12230 pycom07g12310 pycom10g23820 |
| rosa_chinensis | RchiOBHm_Chr5g0009921 |
| rosa_laevigata | RLG00000031710 |
| rosa_multiflora | Rmu_sc0001709.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00066260 |
| rosa_rugosa | Rorug04G0446900 |
| rosa_samantha | Rh5AG078500 Rh5BG073400 Rh5CG085800 Rh5DG073900 |
| rosa_wichuraiana | Rw5G007220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 255, 1037 |
| AccB1I | GGYRCC | 2 cut(s) | 135, 319 |
| AccBSI | CCGCTC | 1 cut(s) | 202 |
| AccI | GTMKAC | 2 cut(s) | 15, 939 |
| AccII | CGCG | 4 cut(s) | 107, 126, 182, 405 |
| AcoI | YGGCCR | 3 cut(s) | 522, 583, 1066 |
| AcsI | RAATTY | 3 cut(s) | 7, 256, 797 |
| AcuI | CTGAAG | 1 cut(s) | 870 |
| AcyI | GRCGYC | 1 cut(s) | 136 |
| AfaI | GTAC | 2 cut(s) | 38, 347 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 32, 101 |
| AgsI | TTSAA | 2 cut(s) | 796, 1048 |
| AjnI | CCWGG | 1 cut(s) | 903 |
| AluBI | AGCT | 4 cut(s) | 55, 193, 210, 845 |
| AluI | AGCT | 4 cut(s) | 55, 193, 210, 845 |
| Alw21I | GWGCWC | 1 cut(s) | 57 |
| Alw26I | GTCTC | 2 cut(s) | 139, 689 |
| AoxI | GGCC | 4 cut(s) | 85, 522, 583, 1066 |
| ApeKI | GCWGC | 3 cut(s) | 674, 705, 921 |
| ApoI | RAATTY | 3 cut(s) | 7, 256, 797 |
| AscI | GGCGCGCC | 1 cut(s) | 124 |
| AspLEI | GCGC | 6 cut(s) | 81, 107, 126, 128, 138, 405 |
| AspS9I | GGNCC | 5 cut(s) | 86, 154, 169, 244, 838 |
| AsuC2I | CCSGG | 1 cut(s) | 173 |
| AsuHPI | GGTGA | 6 cut(s) | 14, 485, 496, 597, 754, 845 |
| AvaII | GGWCC | 4 cut(s) | 154, 169, 244, 838 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 486, 519 |
| BalI | TGGCCA | 1 cut(s) | 585 |
| BanI | GGYRCC | 2 cut(s) | 135, 319 |
| BanII | GRGCYC | 1 cut(s) | 57 |
| BauI | CACGAG | 1 cut(s) | 1062 |
| Bbv12I | GWGCWC | 1 cut(s) | 57 |
| BbvI | GCAGC | 3 cut(s) | 661, 692, 908 |
| BceAI | ACGGC | 1 cut(s) | 100 |
| BciT130I | CCWGG | 1 cut(s) | 905 |
| BcnI | CCSGG | 1 cut(s) | 173 |
| BcoDI | GTCTC | 2 cut(s) | 139, 689 |
| BfaI | CTAG | 1 cut(s) | 638 |
| BfoI | RGCGCY | 1 cut(s) | 139 |
| BfuAI | ACCTGC | 2 cut(s) | 255, 1037 |
| BisI | GCNGC | 6 cut(s) | 71, 183, 203, 675, 706, 922 |
| BlsI | GCNGC | 6 cut(s) | 72, 184, 204, 676, 707, 923 |
| Bme1390I | CCNGG | 2 cut(s) | 173, 905 |
| Bme18I | GGWCC | 4 cut(s) | 154, 169, 244, 838 |
| BmgT120I | GGNCC | 5 cut(s) | 86, 154, 169, 244, 838 |
| BmiI | GGNNCC | 5 cut(s) | 137, 155, 156, 170, 321 |
| BmrFI | CCNGG | 2 cut(s) | 173, 905 |
| BmrI | ACTGGG | 1 cut(s) | 577 |
| BmsI | GCATC | 3 cut(s) | 99, 901, 988 |
| BmuI | ACTGGG | 1 cut(s) | 577 |
| BpmI | CTGGAG | 1 cut(s) | 536 |
| BpuMI | CCSGG | 1 cut(s) | 173 |
| BsaHI | GRCGYC | 1 cut(s) | 136 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 903 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 421, 451 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 32, 101 |
| Bse118I | RCCGGY | 1 cut(s) | 66 |
| Bse1I | ACTGG | 2 cut(s) | 572, 623 |
| BseBI | CCWGG | 1 cut(s) | 905 |
| BseDI | CCNNGG | 2 cut(s) | 82, 903 |
| BseGI | GGATG | 1 cut(s) | 892 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 32, 101 |
| BseNI | ACTGG | 2 cut(s) | 572, 623 |
| BsePI | GCGCGC | 1 cut(s) | 124 |
| BseRI | GAGGAG | 5 cut(s) | 47, 203, 320, 412, 785 |
| BseXI | GCAGC | 3 cut(s) | 661, 692, 908 |
| BseYI | CCCAGC | 1 cut(s) | 289 |
| BsgI | GTGCAG | 1 cut(s) | 976 |
| Bsh1236I | CGCG | 4 cut(s) | 107, 126, 182, 405 |
| Bsh1285I | CGRYCG | 1 cut(s) | 45 |
| BshFI | GGCC | 4 cut(s) | 87, 524, 585, 1068 |
| BshNI | GGYRCC | 2 cut(s) | 135, 319 |
| BsiEI | CGRYCG | 1 cut(s) | 45 |
| BsiHKAI | GWGCWC | 1 cut(s) | 57 |
| BsiSI | CCGG | 2 cut(s) | 67, 172 |
| BslFI | GGGAC | 1 cut(s) | 167 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 32, 101 |
| BsmAI | GTCTC | 2 cut(s) | 139, 689 |
| BsmFI | GGGAC | 1 cut(s) | 167 |
| BsmI | GAATGC | 1 cut(s) | 923 |
| BsnI | GGCC | 4 cut(s) | 87, 524, 585, 1068 |
| Bsp1286I | GDGCHC | 1 cut(s) | 57 |
| Bsp143I | GATC | 3 cut(s) | 42, 748, 889 |
| BspANI | GGCC | 4 cut(s) | 87, 524, 585, 1068 |
| BspFNI | CGCG | 4 cut(s) | 107, 126, 182, 405 |
| BspHI | TCATGA | 1 cut(s) | 858 |
| BspLI | GGNNCC | 5 cut(s) | 137, 155, 156, 170, 321 |
| BspMI | ACCTGC | 2 cut(s) | 255, 1037 |
| BspQI | GCTCTTC | 1 cut(s) | 192 |
| BspT107I | GGYRCC | 2 cut(s) | 135, 319 |
| BsrBI | CCGCTC | 1 cut(s) | 202 |
| BsrFI | RCCGGY | 1 cut(s) | 66 |
| BsrI | ACTGG | 2 cut(s) | 572, 623 |
| BssAI | RCCGGY | 1 cut(s) | 66 |
| BssECI | CCNNGG | 2 cut(s) | 82, 903 |
| BssHII | GCGCGC | 1 cut(s) | 124 |
| BssMI | GATC | 3 cut(s) | 42, 748, 889 |
| BssNI | GRCGYC | 1 cut(s) | 136 |
| BssSI | CACGAG | 1 cut(s) | 1062 |
| Bst2BI | CACGAG | 1 cut(s) | 1062 |
| Bst2UI | CCWGG | 1 cut(s) | 905 |
| Bst4CI | ACNGT | 2 cut(s) | 96, 286 |
| Bst6I | CTCTTC | 1 cut(s) | 192 |
| BstACI | GRCGYC | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 7 cut(s) | 68, 89, 126, 130, 134, 231, 977 |
| BstDEI | CTNAG | 1 cut(s) | 296 |
| BstDSI | CCRYGG | 1 cut(s) | 82 |
| BstF5I | GGATG | 1 cut(s) | 892 |
| BstFNI | CGCG | 4 cut(s) | 107, 126, 182, 405 |
| BstH2I | RGCGCY | 1 cut(s) | 139 |
| BstHHI | GCGC | 6 cut(s) | 81, 107, 126, 128, 138, 405 |
| BstKTI | GATC | 3 cut(s) | 45, 751, 892 |
| BstMAI | GTCTC | 2 cut(s) | 139, 689 |
| BstMBI | GATC | 3 cut(s) | 42, 748, 889 |
| BstMCI | CGRYCG | 1 cut(s) | 45 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 76, 97, 199, 319, 927, 1038 |
| BstNI | CCWGG | 1 cut(s) | 905 |
| BstNSI | RCATGY | 1 cut(s) | 535 |
| BstSCI | CCNGG | 2 cut(s) | 171, 903 |
| BstUI | CGCG | 4 cut(s) | 107, 126, 182, 405 |
| BstV1I | GCAGC | 3 cut(s) | 661, 692, 908 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 241, 514 |
| BsuRI | GGCC | 4 cut(s) | 87, 524, 585, 1068 |
| BtgI | CCRYGG | 1 cut(s) | 82 |
| BtgZI | GCGATG | 1 cut(s) | 122 |
| BtsCI | GGATG | 1 cut(s) | 892 |
| BtsI | GCAGTG | 1 cut(s) | 988 |
| BtsIMutI | CAGTG | 2 cut(s) | 282, 988 |
| BveI | ACCTGC | 2 cut(s) | 255, 1037 |
| Cac8I | GCNNGC | 7 cut(s) | 68, 89, 126, 130, 134, 231, 977 |
| CciI | TCATGA | 1 cut(s) | 858 |
| CfoI | GCGC | 6 cut(s) | 81, 107, 126, 128, 138, 405 |
| Cfr10I | RCCGGY | 1 cut(s) | 66 |
| Cfr13I | GGNCC | 5 cut(s) | 86, 154, 169, 244, 838 |
| CseI | GACGC | 1 cut(s) | 913 |
| Csp6I | GTAC | 2 cut(s) | 37, 346 |
| CviAII | CATG | 8 cut(s) | 76, 368, 455, 479, 532, 717, 859, 1073 |
| CviQI | GTAC | 2 cut(s) | 37, 346 |
| DdeI | CTNAG | 1 cut(s) | 296 |
| DinI | GGCGCC | 1 cut(s) | 137 |
| DpnI | GATC | 3 cut(s) | 44, 750, 891 |
| DpnII | GATC | 3 cut(s) | 42, 748, 889 |
| DraI | TTTAAA | 1 cut(s) | 1056 |
| EaeI | YGGCCR | 3 cut(s) | 522, 583, 1066 |
| Eam1104I | CTCTTC | 1 cut(s) | 192 |
| EarI | CTCTTC | 1 cut(s) | 192 |
| EciI | GGCGGA | 1 cut(s) | 200 |
| Ecl136II | GAGCTC | 1 cut(s) | 55 |
| Eco24I | GRGCYC | 1 cut(s) | 57 |
| Eco47I | GGWCC | 4 cut(s) | 154, 169, 244, 838 |
| Eco53kI | GAGCTC | 1 cut(s) | 55 |
| Eco57I | CTGAAG | 1 cut(s) | 870 |
| EcoICRI | GAGCTC | 1 cut(s) | 55 |
| EcoO109I | RGGNCCY | 1 cut(s) | 154 |
| EcoRI | GAATTC | 1 cut(s) | 7 |
| EcoRII | CCWGG | 1 cut(s) | 903 |
| EcoT22I | ATGCAT | 1 cut(s) | 722 |
| EcoT38I | GRGCYC | 1 cut(s) | 57 |
| EgeI | GGCGCC | 1 cut(s) | 137 |
| EheI | GGCGCC | 1 cut(s) | 137 |
| FaeI | CATG | 8 cut(s) | 79, 371, 458, 482, 535, 720, 862, 1076 |
| FaqI | GGGAC | 1 cut(s) | 167 |
| FatI | CATG | 8 cut(s) | 75, 367, 454, 478, 531, 716, 858, 1072 |
| FauI | CCCGC | 6 cut(s) | 93, 96, 125, 144, 238, 403 |
| FblI | GTMKAC | 2 cut(s) | 15, 939 |
| Fnu4HI | GCNGC | 6 cut(s) | 71, 183, 203, 675, 706, 922 |
| FokI | GGATG | 1 cut(s) | 879 |
| FriOI | GRGCYC | 1 cut(s) | 57 |
| Fsp4HI | GCNGC | 6 cut(s) | 71, 183, 203, 675, 706, 922 |
| FspBI | CTAG | 1 cut(s) | 638 |
| GlaI | GCGC | 6 cut(s) | 80, 106, 125, 127, 137, 404 |
| GluI | GCNGC | 6 cut(s) | 71, 183, 203, 675, 706, 922 |
| GsaI | CCCAGC | 1 cut(s) | 293 |
| GsuI | CTGGAG | 1 cut(s) | 536 |
| HaeII | RGCGCY | 1 cut(s) | 139 |
| HaeIII | GGCC | 4 cut(s) | 87, 524, 585, 1068 |
| HapII | CCGG | 2 cut(s) | 67, 172 |
| HgaI | GACGC | 1 cut(s) | 913 |
| HhaI | GCGC | 6 cut(s) | 81, 107, 126, 128, 138, 405 |
| Hin1I | GRCGYC | 1 cut(s) | 136 |
| Hin1II | CATG | 8 cut(s) | 79, 371, 458, 482, 535, 720, 862, 1076 |
| Hin6I | GCGC | 6 cut(s) | 79, 105, 124, 126, 136, 403 |
| HinP1I | GCGC | 6 cut(s) | 79, 105, 124, 126, 136, 403 |
| HindIII | AAGCTT | 1 cut(s) | 843 |
| HinfI | GANTC | 4 cut(s) | 114, 451, 518, 855 |
| HpaII | CCGG | 2 cut(s) | 67, 172 |
| HphI | GGTGA | 6 cut(s) | 14, 485, 496, 597, 754, 845 |
| Hpy166II | GTNNAC | 4 cut(s) | 16, 282, 605, 940 |
| Hpy188I | TCNGA | 5 cut(s) | 396, 803, 820, 850, 1082 |
| Hpy188III | TCNNGA | 4 cut(s) | 242, 515, 752, 859 |
| Hpy8I | GTNNAC | 4 cut(s) | 16, 282, 605, 940 |
| Hpy99I | CGWCG | 2 cut(s) | 53, 163 |
| HpyAV | CCTTC | 3 cut(s) | 664, 798, 845 |
| HpyCH4III | ACNGT | 2 cut(s) | 96, 286 |
| HpyCH4V | TGCA | 6 cut(s) | 698, 720, 881, 993, 999, 1041 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 76, 97, 199, 319, 927, 1038 |
| HpyF3I | CTNAG | 1 cut(s) | 296 |
| Hsp92I | GRCGYC | 1 cut(s) | 136 |
| Hsp92II | CATG | 8 cut(s) | 79, 371, 458, 482, 535, 720, 862, 1076 |
| HspAI | GCGC | 6 cut(s) | 79, 105, 124, 126, 136, 403 |
| KasI | GGCGCC | 1 cut(s) | 135 |
| KflI | GGGWCCC | 1 cut(s) | 154 |
| KroI | GCCGGC | 1 cut(s) | 66 |
| KroNI | GCCGGC | 1 cut(s) | 68 |
| Kzo9I | GATC | 3 cut(s) | 42, 748, 889 |
| LguI | GCTCTTC | 1 cut(s) | 192 |
| LmnI | GCTCC | 3 cut(s) | 60, 190, 950 |
| Lsp1109I | GCAGC | 3 cut(s) | 661, 692, 908 |
| LweI | GCATC | 3 cut(s) | 99, 901, 988 |
| MaeI | CTAG | 1 cut(s) | 638 |
| MaeIII | GTNAC | 5 cut(s) | 502, 742, 812, 869, 1011 |
| MalI | GATC | 3 cut(s) | 44, 750, 891 |
| MbiI | CCGCTC | 1 cut(s) | 202 |
| MboI | GATC | 3 cut(s) | 42, 748, 889 |
| MboII | GAAGA | 1 cut(s) | 209 |
| MhlI | GDGCHC | 1 cut(s) | 57 |
| MlsI | TGGCCA | 1 cut(s) | 585 |
| MluCI | AATT | 5 cut(s) | 7, 237, 256, 693, 797 |
| MluNI | TGGCCA | 1 cut(s) | 585 |
| Mly113I | GGCGCC | 1 cut(s) | 136 |
| MlyI | GAGTC | 3 cut(s) | 108, 460, 527 |
| MmeI | TCCRAC | 2 cut(s) | 439, 670 |
| Mox20I | TGGCCA | 1 cut(s) | 585 |
| Mph1103I | ATGCAT | 1 cut(s) | 722 |
| MroNI | GCCGGC | 1 cut(s) | 66 |
| MscI | TGGCCA | 1 cut(s) | 585 |
| MseI | TTAA | 2 cut(s) | 576, 1055 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1020 |
| Msp20I | TGGCCA | 1 cut(s) | 585 |
| MspA1I | CMGCKG | 1 cut(s) | 132 |
| MspI | CCGG | 2 cut(s) | 67, 172 |
| MspR9I | CCNGG | 2 cut(s) | 173, 905 |
| Mva1269I | GAATGC | 1 cut(s) | 923 |
| MvaI | CCWGG | 1 cut(s) | 905 |
| MvnI | CGCG | 4 cut(s) | 107, 126, 182, 405 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 76, 97, 199, 319, 927, 1038 |
| NaeI | GCCGGC | 1 cut(s) | 68 |
| NarI | GGCGCC | 1 cut(s) | 136 |
| NciI | CCSGG | 1 cut(s) | 173 |
| NdeII | GATC | 3 cut(s) | 42, 748, 889 |
| NgoMIV | GCCGGC | 1 cut(s) | 66 |
| NlaIII | CATG | 8 cut(s) | 79, 371, 458, 482, 535, 720, 862, 1076 |
| NlaIV | GGNNCC | 5 cut(s) | 137, 155, 156, 170, 321 |
| NmuCI | GTSAC | 3 cut(s) | 502, 742, 869 |
| NsiI | ATGCAT | 1 cut(s) | 722 |
| NspI | RCATGY | 1 cut(s) | 535 |
| PagI | TCATGA | 1 cut(s) | 858 |
| PalAI | GGCGCGCC | 1 cut(s) | 124 |
| PauI | GCGCGC | 1 cut(s) | 124 |
| PciSI | GCTCTTC | 1 cut(s) | 192 |
| PctI | GAATGC | 1 cut(s) | 923 |
| PdiI | GCCGGC | 1 cut(s) | 68 |
| PfeI | GAWTC | 1 cut(s) | 855 |
| PfoI | TCCNGGA | 1 cut(s) | 171 |
| PkrI | GCNGC | 6 cut(s) | 72, 184, 204, 676, 707, 923 |
| Ple19I | CGATCG | 1 cut(s) | 45 |
| PleI | GAGTC | 3 cut(s) | 108, 459, 526 |
| PluTI | GGCGCC | 1 cut(s) | 139 |
| PpsI | GAGTC | 3 cut(s) | 108, 459, 526 |
| PpuMI | RGGWCCY | 1 cut(s) | 154 |
| Psp124BI | GAGCTC | 1 cut(s) | 57 |
| Psp5II | RGGWCCY | 1 cut(s) | 154 |
| Psp6I | CCWGG | 1 cut(s) | 903 |
| PspFI | CCCAGC | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 903 |
| PspN4I | GGNNCC | 5 cut(s) | 137, 155, 156, 170, 321 |
| PspPI | GGNCC | 5 cut(s) | 86, 154, 169, 244, 838 |
| PspPPI | RGGWCCY | 1 cut(s) | 154 |
| PteI | GCGCGC | 1 cut(s) | 124 |
| PvuI | CGATCG | 1 cut(s) | 45 |
| RsaI | GTAC | 2 cut(s) | 38, 347 |
| RsaNI | GTAC | 2 cut(s) | 37, 346 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1020 |
| SacI | GAGCTC | 1 cut(s) | 57 |
| SapI | GCTCTTC | 1 cut(s) | 192 |
| SaqAI | TTAA | 2 cut(s) | 576, 1055 |
| SatI | GCNGC | 6 cut(s) | 71, 183, 203, 675, 706, 922 |
| Sau3AI | GATC | 3 cut(s) | 42, 748, 889 |
| Sau96I | GGNCC | 5 cut(s) | 86, 154, 169, 244, 838 |
| SchI | GAGTC | 3 cut(s) | 108, 460, 527 |
| ScrFI | CCNGG | 2 cut(s) | 173, 905 |
| SduI | GDGCHC | 1 cut(s) | 57 |
| SfaNI | GCATC | 3 cut(s) | 99, 901, 988 |
| SfoI | GGCGCC | 1 cut(s) | 137 |
| SgsI | GGCGCGCC | 1 cut(s) | 124 |
| SinI | GGWCC | 4 cut(s) | 154, 169, 244, 838 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1020 |
| Sse9I | AATT | 5 cut(s) | 7, 237, 256, 693, 797 |
| SspDI | GGCGCC | 1 cut(s) | 135 |
| SspMI | CTAG | 1 cut(s) | 638 |
| SstI | GAGCTC | 1 cut(s) | 57 |
| StyD4I | CCNGG | 2 cut(s) | 171, 903 |
| TaaI | ACNGT | 2 cut(s) | 96, 286 |
| TaqI | TCGA | 2 cut(s) | 41, 224 |
| TaqII | GACCGA | 1 cut(s) | 878 |
| TasI | AATT | 5 cut(s) | 7, 237, 256, 693, 797 |
| TauI | GCSGC | 3 cut(s) | 73, 185, 205 |
| TfiI | GAWTC | 1 cut(s) | 855 |
| Tru1I | TTAA | 2 cut(s) | 576, 1055 |
| Tru9I | TTAA | 2 cut(s) | 576, 1055 |
| TscAI | CASTG | 2 cut(s) | 289, 995 |
| TseFI | GTSAC | 3 cut(s) | 502, 742, 869 |
| TseI | GCWGC | 3 cut(s) | 674, 705, 921 |
| Tsp45I | GTSAC | 3 cut(s) | 502, 742, 869 |
| TspDTI | ATGAA | 7 cut(s) | 20, 356, 528, 621, 646, 847, 1089 |
| TspRI | CASTG | 2 cut(s) | 289, 995 |
| VpaK11BI | GGWCC | 4 cut(s) | 154, 169, 244, 838 |
| XapI | RAATTY | 3 cut(s) | 7, 256, 797 |
| XceI | RCATGY | 1 cut(s) | 535 |
| XmiI | GTMKAC | 2 cut(s) | 15, 939 |
| XspI | CTAG | 1 cut(s) | 638 |
| Zsp2I | ATGCAT | 1 cut(s) | 722 |