Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008040

Physical Location & Seq

Genomic Coordinates Reverse (-)

17884766 .. 17887324

Gene Structure 2559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1126700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCAGAAGAATCATCTCAACGCCCTGTCCCCAAGGGGCATCCCATAAAATTCCGAAGGCTACGGGGTCTCCCCCTTTTTCAATGTTCGGGGGCAGAAGCATCCATTGAGGTAAGCTGTACACACGGCGAGCAGGAATATCTGGGAAACACCCGAAAAGAAAGAAGGTTCGCTTACAAGAAACCAAGAATGGTGGCTGCCATCAATAAACCACTGGCAATCGATTCCAACTTCCTGATGTATAATATGGTGATTTGGAAGACATCTGTACGCCTCATGACGACGCCATCATCGGCAAGTATCACCAAGAATCTGGAGTCTGCCAATAGCATGTTTTCATTTATTTGGTGGGTCATTGGCTTCTACTGGGTACTTAATGGTGGCCAGACTTTGCTATCTAGTTCACCTCGCCTTTACTGTGAGGGAGCATCTCCAGACGGGGCAACATATGAAGAGATTGATAGATTGCCAAAGTTCAAATTCAGAAGGGTAAGTAACTCGGAGAAAGTCAATGGTGAGGTCCAAGCTTCTGAAGGATTCATGACCGAATGTGACACCAATGCACCAACCGATCATCCTATTTCCCAGGCTGATGCTGAATGCTGCGTCTGCCTTTCTGTGTACAAGAATGGAGCAGAGCTAAGCCAACATCCTTGCCAGCATCATTTTCACTGCACTCATAGCACAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

231

Amino Acids

25.91

Weight (kDa)

8.35

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61180
fragaria_vesca	FvH4_3g08230
malus_domestica	MD01G1049700.v1.1 MD05G1306100.v1.1 MD07G1126700.v1.1 MD07G1126800.v1.1 MD10G1285100.v1.1
prunus_persica	Prupe.2G157200_v2.0.a1 Prupe.4G056500_v2.0.a1
pyrus_communis	pycom01g07470 pycom05g28320 pycom07g12230 pycom07g12310 pycom10g23820
rosa_chinensis	RchiOBHm_Chr5g0009921
rosa_laevigata	RLG00000031710
rosa_multiflora	Rmu_sc0001709.1_g000014
rosa_roxburghii	Rroxscaffold_1G00066260
rosa_rugosa	Rorug04G0446900
rosa_samantha	Rh5AG078500 Rh5BG073400 Rh5CG085800 Rh5DG073900
rosa_wichuraiana	Rw5G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	2 cut(s)	50, 479
AcuI	CTGAAG	1 cut(s)	552
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	4 cut(s)	121, 270, 372, 623
AgsI	TTSAA	2 cut(s)	83, 478
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	3 cut(s)	117, 527, 640
AluI	AGCT	3 cut(s)	117, 527, 640
Alw26I	GTCTC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	197, 603
ApoI	RAATTY	2 cut(s)	50, 479
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	4 cut(s)	262, 295, 396, 527
AvaII	GGWCC	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	184, 590
BccI	CCATC	2 cut(s)	209, 295
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	399
BisI	GCNGC	2 cut(s)	198, 604
BlpI	GCTNAGC	1 cut(s)	641
BlsI	GCNGC	2 cut(s)	199, 605
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmrFI	CCNGG	1 cut(s)	587
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	5 cut(s)	49, 110, 437, 583, 670
BmuI	ACTGGG	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	266
BpmI	CTGGAG	2 cut(s)	335, 417
Bpu1102I	GCTNAGC	1 cut(s)	641
Bsa29I	ATCGAT	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	33, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bse1I	ACTGG	2 cut(s)	219, 371
BseBI	CCWGG	1 cut(s)	587
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	33, 585
BseGI	GGATG	4 cut(s)	40, 101, 574, 649
BseNI	ACTGG	2 cut(s)	219, 371
BseXI	GCAGC	2 cut(s)	184, 590
BsgI	GTGCAG	1 cut(s)	658
BshFI	GGCC	1 cut(s)	384
BshVI	ATCGAT	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	74
Bsp1407I	TGTACA	2 cut(s)	119, 621
Bsp143I	GATC	1 cut(s)	571
Bsp1720I	GCTNAGC	1 cut(s)	641
BspANI	GGCC	1 cut(s)	384
BspDI	ATCGAT	1 cut(s)	222
BspHI	TCATGA	2 cut(s)	276, 540
BspTNI	GGTCTC	1 cut(s)	74
BsrGI	TGTACA	2 cut(s)	119, 621
BsrI	ACTGG	2 cut(s)	219, 371
BssECI	CCNNGG	2 cut(s)	33, 585
BssMI	GATC	1 cut(s)	571
BssNI	GRCGYC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	1 cut(s)	447
BstACI	GRCGYC	1 cut(s)	284
BstAUI	TGTACA	2 cut(s)	119, 621
BstC8I	GCNNGC	2 cut(s)	131, 659
BstDEI	CTNAG	1 cut(s)	641
BstF5I	GGATG	4 cut(s)	40, 101, 574, 649
BstKTI	GATC	1 cut(s)	574
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	2 cut(s)	609, 681
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	184, 590
BstV2I	GAAGAC	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	384
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	4 cut(s)	40, 101, 574, 649
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	212, 670
Cac8I	GCNNGC	2 cut(s)	131, 659
CciI	TCATGA	2 cut(s)	276, 540
Cfr13I	GGNCC	1 cut(s)	520
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	2 cut(s)	292, 595
Csp6I	GTAC	4 cut(s)	120, 269, 371, 622
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	3 cut(s)	277, 331, 541
CviJI	RGCY	9 cut(s)	61, 117, 197, 360, 384, 527, 590, 640, 645
CviKI_1	RGCY	9 cut(s)	61, 117, 197, 360, 384, 527, 590, 640, 645
CviQI	GTAC	4 cut(s)	120, 269, 371, 622
DdeI	CTNAG	1 cut(s)	641
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	280, 334, 544
FaiI	YATR	9 cut(s)	47, 243, 248, 278, 332, 448, 450, 542, 681
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	3 cut(s)	276, 330, 540
FauNDI	CATATG	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	198, 604
FokI	GGATG	4 cut(s)	27, 88, 561, 636
Fsp4HI	GCNGC	2 cut(s)	198, 604
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	2 cut(s)	198, 604
GsuI	CTGGAG	2 cut(s)	335, 417
HaeIII	GGCC	1 cut(s)	384
HgaI	GACGC	2 cut(s)	292, 595
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	280, 334, 544
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	5 cut(s)	11, 224, 310, 317, 537
HphI	GGTGA	4 cut(s)	262, 295, 396, 527
Hpy166II	GTNNAC	3 cut(s)	122, 404, 622
Hpy188I	TCNGA	5 cut(s)	7, 56, 485, 502, 532
Hpy188III	TCNNGA	5 cut(s)	235, 277, 314, 434, 541
Hpy8I	GTNNAC	3 cut(s)	122, 404, 622
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	4 cut(s)	51, 159, 480, 527
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4V	TGCA	2 cut(s)	563, 675
HpyF10VI	GCNNNNNNNGC	2 cut(s)	609, 681
HpyF3I	CTNAG	1 cut(s)	641
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	3 cut(s)	280, 334, 544
Kzo9I	GATC	1 cut(s)	571
LmnI	GCTCC	2 cut(s)	425, 632
Lsp1109I	GCAGC	2 cut(s)	184, 590
LweI	GCATC	5 cut(s)	49, 110, 437, 583, 670
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	494, 551
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	3 cut(s)	20, 271, 464
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	2 cut(s)	50, 479
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	103, 284, 415, 417, 511
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	375
Msp20I	TGGCCA	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	587
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	609, 681
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	3 cut(s)	280, 334, 544
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	1 cut(s)	334
PagI	TCATGA	2 cut(s)	276, 540
PctI	GAATGC	1 cut(s)	605
PfeI	GAWTC	4 cut(s)	11, 224, 310, 537
PkrI	GCNGC	2 cut(s)	199, 605
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	520
RsaI	GTAC	4 cut(s)	121, 270, 372, 623
RsaNI	GTAC	4 cut(s)	120, 269, 371, 622
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	2 cut(s)	198, 604
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	587
SetI	ASST	7 cut(s)	114, 119, 170, 409, 522, 529, 642
SfaNI	GCATC	5 cut(s)	49, 110, 437, 583, 670
SinI	GGWCC	1 cut(s)	520
Sse9I	AATT	2 cut(s)	50, 479
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	419
TaqI	TCGA	1 cut(s)	222
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	2 cut(s)	50, 479
TatI	WGTACW	2 cut(s)	119, 621
TfiI	GAWTC	4 cut(s)	11, 224, 310, 537
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	219, 677
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	2 cut(s)	197, 603
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	327, 465, 529
TspRI	CASTG	2 cut(s)	219, 677
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	2 cut(s)	50, 479
XceI	RCATGY	1 cut(s)	334
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.