Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008040

Physical Location & Seq

Genomic Coordinates Forward (+)

21049864 .. 21054189

Gene Structure 4326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G157200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGACACTTCACCACTCCTCGGCTATTCAATGGCCGATGACCTCCTCCGAAGCCGGAGGCTCGTGCGCCACACCCCGCCACCATTGCGTGGCGCTGCGCGGCTCCTTCGACGCGCCAGCGGGCGCCGAATGAGGCTTCGTGAGCCCTCGTTTCGGGTCCGAGAGAACGCGGCGGAGGAGCTGGAAGAGCGCCAGAGCTACTGGGCTTACTCGAAGCCCGTCATAGTTCTGGACCTGCTATGGAACTTGGCTTTTGTGTGTGTTGGGTTCACTGTGATGGGGTTGAGCATGGAGGAGAAGCCTGTGGTGCCTTTGAGGATTTGGGTTGTTGGGTATATTTTGCAGTGTGTTGTCCATGTTGGGTGTGTGGTTGTGGAGTATAGGAGGAGACGTGAGGTGGGTTTTGGTGAGGTAGGTTGGGGAAGTGGTGGGAGTGGCAGTTTGGGGTCTGGAAGTGATGTTGAAGATTATGGGAGTGAGCAGGGTATGGCTGATGATGAGACAAGTGTCACAAAGCATCTGGAGTCAGCCAATACCATGTTTTCATTTATTTGGTGGGTCATTGGATTCTACTGGGTGACCGATGGTGGCCAGACTTTGCTATGTGATTCACCTCATCTATACTGGCTTTGTGTTACATTTCTAGCTTTTGATATGCTCTTCGTCGTTATATGTGTTGCTGTTGCATGTCTTGTTGGAATTGCAGTCTGCTGCTGTCTGCCATGCATAATTGCAATCTTATATGCTGTAACAGATCAGGAGGGGGCAACAGAGGAAGAAATTGATAGATTACCAAAGTTCAAATTTCGCAAGACAGGTAATTTTGAGAAACTTAACGGTGAGGCCCAAGCTTCTGAAGGATTAATGACCGAATGTAACACTCACGCACCAGCTGAGCATGTTATTTCCCAGGATGATGCTGAATGTTGCATCTGTCTCTCTGTTTACGACAATGGAGCAGAATTACGCGGACTTCCTTGCCATCATCATTTTCACTGCAGCTGCATAGACAAATGGTTATACATCAATGCTACCTGCCCCCTGTGCAAGTTCAACATTTTAAAGCCTAGTAACCAAATTGGTACCGGCGTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

366

Amino Acids

40.74

Weight (kDa)

5.52

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61180
fragaria_vesca	FvH4_3g08230
malus_domestica	MD01G1049700.v1.1 MD05G1306100.v1.1 MD07G1126700.v1.1 MD07G1126800.v1.1 MD10G1285100.v1.1
prunus_persica	Prupe.2G157200_v2.0.a1 Prupe.4G056500_v2.0.a1
pyrus_communis	pycom01g07470 pycom05g28320 pycom07g12230 pycom07g12310 pycom10g23820
rosa_chinensis	RchiOBHm_Chr5g0009921
rosa_laevigata	RLG00000031710
rosa_multiflora	Rmu_sc0001709.1_g000014
rosa_roxburghii	Rroxscaffold_1G00066260
rosa_rugosa	Rorug04G0446900
rosa_samantha	Rh5AG078500 Rh5BG073400 Rh5CG085800 Rh5DG073900
rosa_wichuraiana	Rw5G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	243, 1043
Acc65I	GGTACC	1 cut(s)	1082
AccB1I	GGYRCC	3 cut(s)	123, 307, 1082
AccB7I	CCANNNNNTGG	1 cut(s)	89
AccII	CGCG	4 cut(s)	100, 114, 170, 969
AciI	CCGC	6 cut(s)	77, 100, 120, 170, 173, 969
AcoI	YGGCCR	2 cut(s)	33, 589
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	876
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	1 cut(s)	1084
AfiI	CCNNNNNNNGG	3 cut(s)	20, 89, 153
AgsI	TTSAA	4 cut(s)	30, 464, 802, 1054
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	909
AluBI	AGCT	6 cut(s)	181, 198, 647, 851, 893, 1002
AluI	AGCT	6 cut(s)	181, 198, 647, 851, 893, 1002
Alw26I	GTCTC	3 cut(s)	382, 494, 941
AoxI	GGCC	3 cut(s)	33, 589, 843
ApeKI	GCWGC	4 cut(s)	95, 711, 999, 1002
ApoI	RAATTY	1 cut(s)	803
AseI	ATTAAT	1 cut(s)	863
Asp718I	GGTACC	1 cut(s)	1082
AspLEI	GCGC	6 cut(s)	69, 95, 100, 116, 126, 192
AspS9I	GGNCC	3 cut(s)	157, 232, 844
AsuHPI	GGTGA	5 cut(s)	3, 419, 589, 603, 851
AvaII	GGWCC	2 cut(s)	157, 232
BaeI	ACNNNNGTAYC	1 cut(s)	1074
BalI	TGGCCA	1 cut(s)	591
BanI	GGYRCC	3 cut(s)	123, 307, 1082
BanII	GRGCYC	1 cut(s)	147
BauI	CACGAG	1 cut(s)	62
BbvI	GCAGC	4 cut(s)	82, 698, 989, 1011
BccI	CCATC	3 cut(s)	271, 578, 990
BciT130I	CCWGG	1 cut(s)	911
BcoDI	GTCTC	3 cut(s)	382, 494, 941
BfaI	CTAG	2 cut(s)	644, 1068
BfmI	CTRYAG	1 cut(s)	997
BfoI	RGCGCY	3 cut(s)	96, 127, 193
BfuAI	ACCTGC	2 cut(s)	243, 1043
BisI	GCNGC	6 cut(s)	96, 101, 171, 712, 1000, 1003
BlpI	GCTNAGC	1 cut(s)	894
BlsI	GCNGC	6 cut(s)	97, 102, 172, 713, 1001, 1004
Bme1390I	CCNGG	1 cut(s)	911
Bme18I	GGWCC	2 cut(s)	157, 232
BmgBI	CACGTC	1 cut(s)	392
BmgT120I	GGNCC	3 cut(s)	157, 232, 844
BmiI	GGNNCC	5 cut(s)	104, 125, 158, 309, 1084
BmrFI	CCNGG	1 cut(s)	911
BmrI	ACTGGG	2 cut(s)	211, 583
BmsI	GCATC	3 cut(s)	526, 907, 939
BmuI	ACTGGG	2 cut(s)	211, 583
BoxI	GACNNNNGTC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	542
Bpu1102I	GCTNAGC	1 cut(s)	894
BsaHI	GRCGYC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	19, 909
BsaXI	ACNNNNNCTCC	4 cut(s)	376, 406, 424, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 89, 153
Bse118I	RCCGGY	1 cut(s)	1085
Bse1I	ACTGG	3 cut(s)	206, 578, 629
Bse3DI	GCAATG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	911
BseDI	CCNNGG	2 cut(s)	19, 909
BseGI	GGATG	1 cut(s)	919
BseLI	CCNNNNNNNGG	3 cut(s)	20, 89, 153
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	3 cut(s)	206, 578, 629
BseRI	GAGGAG	5 cut(s)	8, 35, 191, 308, 400
BseXI	GCAGC	4 cut(s)	82, 698, 989, 1011
Bsh1236I	CGCG	4 cut(s)	100, 114, 170, 969
BshFI	GGCC	3 cut(s)	35, 591, 845
BshNI	GGYRCC	3 cut(s)	123, 307, 1082
BsiSI	CCGG	2 cut(s)	55, 1086
BslI	CCNNNNNNNGG	3 cut(s)	20, 89, 153
BsmAI	GTCTC	3 cut(s)	382, 494, 941
BsmBI	CGTCTC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	35, 591, 845
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	754
Bsp1720I	GCTNAGC	1 cut(s)	894
BspACI	CCGC	6 cut(s)	77, 100, 120, 170, 173, 969
BspANI	GGCC	3 cut(s)	35, 591, 845
BspCNI	CTCAG	1 cut(s)	886
BspFNI	CGCG	4 cut(s)	100, 114, 170, 969
BspLI	GGNNCC	5 cut(s)	104, 125, 158, 309, 1084
BspMAI	CTGCAG	1 cut(s)	1001
BspMI	ACCTGC	2 cut(s)	243, 1043
BspQI	GCTCTTC	2 cut(s)	180, 665
BspT107I	GGYRCC	3 cut(s)	123, 307, 1082
BsrDI	GCAATG	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	1085
BsrI	ACTGG	3 cut(s)	206, 578, 629
BssAI	RCCGGY	1 cut(s)	1085
BssECI	CCNNGG	2 cut(s)	19, 909
BssMI	GATC	1 cut(s)	754
BssNI	GRCGYC	1 cut(s)	124
BssSI	CACGAG	1 cut(s)	62
Bst2BI	CACGAG	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	911
Bst4CI	ACNGT	2 cut(s)	274, 839
Bst6I	CTCTTC	2 cut(s)	180, 665
BstACI	GRCGYC	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	118, 122
BstDEI	CTNAG	1 cut(s)	894
BstEII	GGTNACC	1 cut(s)	577
BstF5I	GGATG	1 cut(s)	919
BstFNI	CGCG	4 cut(s)	100, 114, 170, 969
BstH2I	RGCGCY	3 cut(s)	96, 127, 193
BstHHI	GCGC	6 cut(s)	69, 95, 100, 116, 126, 192
BstKTI	GATC	1 cut(s)	757
BstMAI	GTCTC	3 cut(s)	382, 494, 941
BstMBI	GATC	1 cut(s)	754
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 142, 187, 307, 1044
BstNI	CCWGG	1 cut(s)	911
BstNSI	RCATGY	2 cut(s)	690, 902
BstPAI	GACNNNNGTC	1 cut(s)	506
BstPI	GGTNACC	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	909
BstSFI	CTRYAG	1 cut(s)	997
BstUI	CGCG	4 cut(s)	100, 114, 170, 969
BstV1I	GCAGC	4 cut(s)	82, 698, 989, 1011
BsuRI	GGCC	3 cut(s)	35, 591, 845
BtrI	CACGTC	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	919
BtsI	GCAGTG	2 cut(s)	350, 994
BtsIMutI	CAGTG	3 cut(s)	270, 350, 994
BveI	ACCTGC	2 cut(s)	243, 1043
Cac8I	GCNNGC	2 cut(s)	118, 122
CfoI	GCGC	6 cut(s)	69, 95, 100, 116, 126, 192
Cfr10I	RCCGGY	1 cut(s)	1085
Cfr13I	GGNCC	3 cut(s)	157, 232, 844
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	1083
CviAII	CATG	6 cut(s)	289, 356, 538, 687, 723, 899
CviQI	GTAC	1 cut(s)	1083
DdeI	CTNAG	1 cut(s)	894
DinI	GGCGCC	1 cut(s)	125
DpnI	GATC	1 cut(s)	756
DpnII	GATC	1 cut(s)	754
DraI	TTTAAA	1 cut(s)	1062
EaeI	YGGCCR	2 cut(s)	33, 589
Eam1104I	CTCTTC	2 cut(s)	180, 665
EarI	CTCTTC	2 cut(s)	180, 665
EciI	GGCGGA	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	147
Eco47I	GGWCC	2 cut(s)	157, 232
Eco57I	CTGAAG	1 cut(s)	876
Eco91I	GGTNACC	1 cut(s)	577
EcoO65I	GGTNACC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	909
EcoT22I	ATGCAT	1 cut(s)	728
EcoT38I	GRGCYC	1 cut(s)	147
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	6 cut(s)	292, 359, 541, 690, 726, 902
FatI	CATG	6 cut(s)	288, 355, 537, 686, 722, 898
FauI	CCCGC	2 cut(s)	84, 113
Fnu4HI	GCNGC	6 cut(s)	96, 101, 171, 712, 1000, 1003
FokI	GGATG	1 cut(s)	926
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	6 cut(s)	96, 101, 171, 712, 1000, 1003
FspBI	CTAG	2 cut(s)	644, 1068
GlaI	GCGC	6 cut(s)	68, 94, 99, 115, 125, 191
GluI	GCNGC	6 cut(s)	96, 101, 171, 712, 1000, 1003
GsuI	CTGGAG	1 cut(s)	542
HaeII	RGCGCY	3 cut(s)	96, 127, 193
HaeIII	GGCC	3 cut(s)	35, 591, 845
HapII	CCGG	2 cut(s)	55, 1086
HgaI	GACGC	1 cut(s)	120
HhaI	GCGC	6 cut(s)	69, 95, 100, 116, 126, 192
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	6 cut(s)	292, 359, 541, 690, 726, 902
Hin6I	GCGC	6 cut(s)	67, 93, 98, 114, 124, 190
HinP1I	GCGC	6 cut(s)	67, 93, 98, 114, 124, 190
HindIII	AAGCTT	1 cut(s)	849
HinfI	GANTC	3 cut(s)	524, 567, 608
HpaII	CCGG	2 cut(s)	55, 1086
HphI	GGTGA	5 cut(s)	3, 419, 589, 603, 851
Hpy166II	GTNNAC	2 cut(s)	270, 946
Hpy188I	TCNGA	3 cut(s)	50, 161, 856
Hpy188III	TCNNGA	5 cut(s)	140, 230, 450, 521, 758
Hpy8I	GTNNAC	2 cut(s)	270, 946
Hpy99I	CGWCG	2 cut(s)	114, 668
HpyAV	CCTTC	2 cut(s)	116, 851
HpyCH4III	ACNGT	2 cut(s)	274, 839
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	9 cut(s)	343, 686, 704, 726, 734, 930, 999, 1005, 1047
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 142, 187, 307, 1044
HpyF3I	CTNAG	1 cut(s)	894
HpySE526I	ACGT	1 cut(s)	391
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	6 cut(s)	292, 359, 541, 690, 726, 902
HspAI	GCGC	6 cut(s)	67, 93, 98, 114, 124, 190
KasI	GGCGCC	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	1086
Kzo9I	GATC	1 cut(s)	754
LguI	GCTCTTC	2 cut(s)	180, 665
LmnI	GCTCC	3 cut(s)	108, 178, 956
Lsp1109I	GCAGC	4 cut(s)	82, 698, 989, 1011
LweI	GCATC	3 cut(s)	526, 907, 939
MaeI	CTAG	2 cut(s)	644, 1068
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	6 cut(s)	508, 577, 634, 748, 875, 1070
MalI	GATC	1 cut(s)	756
MboI	GATC	1 cut(s)	754
MboII	GAAGA	4 cut(s)	197, 476, 652, 788
MhlI	GDGCHC	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	7 cut(s)	699, 729, 780, 803, 820, 962, 1077
MluNI	TGGCCA	1 cut(s)	591
Mly113I	GGCGCC	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	676
Mox20I	TGGCCA	1 cut(s)	591
Mph1103I	ATGCAT	1 cut(s)	728
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	3 cut(s)	834, 863, 1061
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	3 cut(s)	120, 893, 1002
MspI	CCGG	2 cut(s)	55, 1086
MspR9I	CCNGG	1 cut(s)	911
MteI	GCGCNGCGC	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	911
MvnI	CGCG	4 cut(s)	100, 114, 170, 969
MwoI	GCNNNNNNNGC	5 cut(s)	85, 142, 187, 307, 1044
NarI	GGCGCC	1 cut(s)	124
NdeII	GATC	1 cut(s)	754
NlaIII	CATG	6 cut(s)	292, 359, 541, 690, 726, 902
NlaIV	GGNNCC	5 cut(s)	104, 125, 158, 309, 1084
NmuCI	GTSAC	2 cut(s)	508, 577
NsiI	ATGCAT	1 cut(s)	728
NspI	RCATGY	2 cut(s)	690, 902
PciSI	GCTCTTC	2 cut(s)	180, 665
PfeI	GAWTC	2 cut(s)	567, 608
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	6 cut(s)	97, 102, 172, 713, 1001, 1004
PleI	GAGTC	1 cut(s)	532
PluTI	GGCGCC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	532
PshAI	GACNNNNGTC	1 cut(s)	506
PshBI	ATTAAT	1 cut(s)	863
Psp6I	CCWGG	1 cut(s)	909
PspEI	GGTNACC	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	5 cut(s)	104, 125, 158, 309, 1084
PspPI	GGNCC	3 cut(s)	157, 232, 844
PstI	CTGCAG	1 cut(s)	1001
PvuII	CAGCTG	2 cut(s)	893, 1002
RsaI	GTAC	1 cut(s)	1084
RsaNI	GTAC	1 cut(s)	1083
RseI	CAYNNNNRTG	1 cut(s)	275
SapI	GCTCTTC	2 cut(s)	180, 665
SaqAI	TTAA	3 cut(s)	834, 863, 1061
SatI	GCNGC	6 cut(s)	96, 101, 171, 712, 1000, 1003
Sau3AI	GATC	1 cut(s)	754
Sau96I	GGNCC	3 cut(s)	157, 232, 844
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	911
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	3 cut(s)	526, 907, 939
SfcI	CTRYAG	1 cut(s)	997
SfoI	GGCGCC	1 cut(s)	125
SinI	GGWCC	2 cut(s)	157, 232
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	7 cut(s)	699, 729, 780, 803, 820, 962, 1077
SsiI	CCGC	6 cut(s)	77, 100, 120, 170, 173, 969
SspDI	GGCGCC	1 cut(s)	123
SspMI	CTAG	2 cut(s)	644, 1068
StyD4I	CCNGG	1 cut(s)	909
TaaI	ACNGT	2 cut(s)	274, 839
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	109, 212
TaqII	GACCGA	2 cut(s)	596, 884
TasI	AATT	7 cut(s)	699, 729, 780, 803, 820, 962, 1077
TauI	GCSGC	2 cut(s)	103, 173
TfiI	GAWTC	2 cut(s)	567, 608
Tru1I	TTAA	3 cut(s)	834, 863, 1061
Tru9I	TTAA	3 cut(s)	834, 863, 1061
TscAI	CASTG	3 cut(s)	277, 350, 1001
TseFI	GTSAC	2 cut(s)	508, 577
TseI	GCWGC	4 cut(s)	95, 711, 999, 1002
Tsp45I	GTSAC	2 cut(s)	508, 577
TspDTI	ATGAA	1 cut(s)	534
TspRI	CASTG	3 cut(s)	277, 350, 1001
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	157, 232
VspI	ATTAAT	1 cut(s)	863
XapI	RAATTY	1 cut(s)	803
XceI	RCATGY	2 cut(s)	690, 902
XspI	CTAG	2 cut(s)	644, 1068
Zsp2I	ATGCAT	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.