Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008040

Physical Location & Seq

Genomic Coordinates Reverse (-)

13620480 .. 13621035

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12310.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTGAACTTAAACCACCACCAACCCTCGTCTCCCTTCGACGAGCGCCAGAGCGACTGGGCCTACTCTTGGTCGATTATCGTGTTGGACCTCTTGTGGAACACCGGGCTCTTTGGGATTGTTGTCAGGGTGCTGTCAATGAGTTGGAAAGAGGCGTCTTCGGTGCCTTTGAGGACTTGGATTGGCGGGTACGTGTTTCAGTGCCTAGTCCATATGGTCTGTGTGGGGGTGGAGTGCAAGCGGTGGAGGCACGGAGGTCAAGCGGCGGCTGAAGCGAGTTATGGGTGTGAAAATTCATTTGGGTCAGGGAGTGATGATGGTGAGGACCATGGAGTTAAGCAAAGTGCTGACTACACTGCCACCAGTATTGTAGCTGTTGCAATATCTATTTTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

133

Amino Acids

14.5

Weight (kDa)

5.36

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61180
fragaria_vesca	FvH4_3g08230
malus_domestica	MD01G1049700.v1.1 MD05G1306100.v1.1 MD07G1126700.v1.1 MD07G1126800.v1.1 MD10G1285100.v1.1
prunus_persica	Prupe.2G157200_v2.0.a1 Prupe.4G056500_v2.0.a1
pyrus_communis	pycom01g07470 pycom05g28320 pycom07g12230 pycom07g12310 pycom10g23820
rosa_chinensis	RchiOBHm_Chr5g0009921
rosa_laevigata	RLG00000031710
rosa_multiflora	Rmu_sc0001709.1_g000014
rosa_roxburghii	Rroxscaffold_1G00066260
rosa_rugosa	Rorug04G0446900
rosa_samantha	Rh5AG078500 Rh5BG073400 Rh5CG085800 Rh5DG073900
rosa_wichuraiana	Rw5G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	163
AciI	CCGC	4 cut(s)	186, 241, 263, 266
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	7
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	3 cut(s)	60, 88, 325
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	88, 325
BanI	GGYRCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	150
BccI	CCATC	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	2 cut(s)	264, 267
BlsI	GCNGC	2 cut(s)	265, 268
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	2 cut(s)	88, 325
BmgT120I	GGNCC	3 cut(s)	60, 88, 325
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	67
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	2 cut(s)	62, 363
BseDI	CCNNGG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseNI	ACTGG	2 cut(s)	62, 363
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	36
BsmBI	CGTCTC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	4 cut(s)	186, 241, 263, 266
BspANI	GGCC	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	62, 363
BssECI	CCNNGG	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	328
BstACI	GRCGYC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 272
BstSCI	CCNGG	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	206, 354
Cac8I	GCNNGC	1 cut(s)	239
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	60, 88, 325
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	4 cut(s)	62, 109, 269, 374
CviKI_1	RGCY	4 cut(s)	62, 109, 269, 374
CviQI	GTAC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	88, 325
Eco57I	CTGAAG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	1 cut(s)	332
FaiI	YATR	4 cut(s)	213, 215, 282, 330
FatI	CATG	1 cut(s)	328
FauI	CCCGC	1 cut(s)	179
FauNDI	CATATG	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	264, 267
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	264, 267
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	2 cut(s)	264, 267
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	332
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	237, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 272
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	1 cut(s)	46
LpnPI	CCDG	6 cut(s)	43, 62, 112, 118, 291, 376
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	192
MboII	GAAGA	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	292
MmeI	TCCRAC	2 cut(s)	66, 125
MnlI	CCTC	7 cut(s)	37, 101, 145, 165, 240, 248, 316
MseI	TTAA	2 cut(s)	11, 336
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	247, 272
NciI	CCSGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	328
NdeI	CATATG	1 cut(s)	213
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	265, 268
Ppu21I	YACGTR	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	3 cut(s)	60, 88, 325
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	11, 336
SatI	GCNGC	2 cut(s)	264, 267
Sau96I	GGNCC	3 cut(s)	60, 88, 325
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	93, 195, 259, 376
SinI	GGWCC	2 cut(s)	88, 325
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	4 cut(s)	186, 241, 263, 266
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	328
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	39, 74
TasI	AATT	1 cut(s)	292
TauI	GCSGC	2 cut(s)	266, 269
Tru1I	TTAA	2 cut(s)	11, 336
Tru9I	TTAA	2 cut(s)	11, 336
TscAI	CASTG	2 cut(s)	206, 361
TspDTI	ATGAA	1 cut(s)	285
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	206, 361
VpaK11BI	GGWCC	2 cut(s)	88, 325
XapI	RAATTY	1 cut(s)	292
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.