MD07G1126800.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
17894451 .. 17898333
3883 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1126800.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGATGAATTCCGTAGACATTCACCCACTCATCGGGTACTCAATCGGCGACGAGCTCCTCCAAAGCCGGCGGCTCATGCGCCACGGCCCGCCACCGTTGCGGGGCGCGATGCGGCTCTTTCGGCGCGCCAGCGGGCGCCGAATGAGACTGCGGGACCCGTCGGTTAGGGTCCGGGAGAACGCGGCGGAGGAGCTGGAAGAGAGGCAGAGCTTCTGGTTTCACTCGAAGCCCGCCATAATTCTGGACCTGCTGTGGAATTTGGTTTTTGTGATTGTTGGGTTCACTGTGCTGGGGCTGAGTGTGGAGGAGAAGCCATTGGTGCCTATGAGGATTTGGGTTGTTGGGTACATTTTGCTGTGTGTTGTTCATGTTGGGTGCGTGGTTGCGGCGTATTGGAGGAGGGGCGAGGCGGGTTGGGGGAGTGGTGGGAGTGAGAGTTTGGTGTCAGGGAGTAATGTTGGAGGTTATGGGGGTGAGCATGGTTTGGCTGATGATACAAGTATCACCAAAAATCTGGAGTCGGCTAATAGCATGTTTTCATTTATTTGGTGGGTCATTGGCTTCTACTGGGTGCTTAATGGTGGCCAGGCTTTGCTATCTAGTTCACCTCGCCTTTACTGGCTCTGTGTTTCATTTCTAGTTTTTGATGTTGCCTTCATCATTGTATGTGTTGCTGCTTCCTGTCTCGTTGGAATTGCAGTCTGCTGCTTTCTGCCATGCATAATAGCAATCTTATATGCGGTGACAGATCAGGATGGGGCAACAGATGAGGAGATTGATAGATTGCCAAAGTTCAAATTCAGAAGGGTAAGTAACACGGAGAAAGTCAATGGTGAGGTCCAAGTTTCTGAAGGATTCATGACCGAATGTGACACCAATGCACAAAACGATCATCCTATTTCCCAGGCTGATGCTGAATGCTGCATCTGCCTTTCTGTGTACGAGAATGGAGCAGAACTACGCCAACTTCCTTGCCAGCATCATTTTCACTGCACTTGCATAGACAAATGGTTACATATCAATGCTACCTGCCCTATGTGCAAGTTCAACATTTTAAGGCCTCGTGGCCGACATGAAATCGGACAAGTGTGA

Protein Analysis

364

Amino Acids

40.63

Weight (kDa)

6.26

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 306 - 348 1.9e-13 Ring finger domain
zf-RING_11 PF17123 306 - 334 3.2e-08 RING-like zinc finger
zf-rbx1 PF12678 306 - 348 5.8e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 255, 1037
AccB1I GGYRCC 2 cut(s) 135, 319
AccI GTMKAC 1 cut(s) 15
AccII CGCG 3 cut(s) 107, 126, 182
AcoI YGGCCR 2 cut(s) 583, 1066
AcsI RAATTY 3 cut(s) 7, 256, 797
AcuI CTGAAG 1 cut(s) 870
AcyI GRCGYC 1 cut(s) 136
AfaI GTAC 3 cut(s) 38, 347, 941
AfiI CCNNNNNNNGG 2 cut(s) 32, 101
AgsI TTSAA 2 cut(s) 796, 1048
AjnI CCWGG 2 cut(s) 585, 903
AluBI AGCT 3 cut(s) 55, 193, 210
AluI AGCT 3 cut(s) 55, 193, 210
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 139, 689
AoxI GGCC 4 cut(s) 85, 583, 1058, 1066
ApeKI GCWGC 3 cut(s) 674, 705, 921
ApoI RAATTY 3 cut(s) 7, 256, 797
AscI GGCGCGCC 1 cut(s) 124
AspLEI GCGC 5 cut(s) 81, 107, 126, 128, 138
AspS9I GGNCC 5 cut(s) 86, 154, 169, 244, 838
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 6 cut(s) 14, 485, 496, 597, 754, 845
AvaII GGWCC 4 cut(s) 154, 169, 244, 838
BalI TGGCCA 1 cut(s) 585
BanI GGYRCC 2 cut(s) 135, 319
BanII GRGCYC 1 cut(s) 57
BauI CACGAG 1 cut(s) 1062
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 661, 692, 908
BccI CCATC 1 cut(s) 749
BceAI ACGGC 1 cut(s) 100
BciT130I CCWGG 2 cut(s) 587, 905
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 139, 689
BfaI CTAG 2 cut(s) 600, 638
BfoI RGCGCY 1 cut(s) 139
BfuAI ACCTGC 2 cut(s) 255, 1037
BisI GCNGC 7 cut(s) 71, 113, 183, 387, 675, 706, 922
BlsI GCNGC 7 cut(s) 72, 114, 184, 388, 676, 707, 923
Bme1390I CCNGG 3 cut(s) 173, 587, 905
Bme18I GGWCC 4 cut(s) 154, 169, 244, 838
BmgT120I GGNCC 5 cut(s) 86, 154, 169, 244, 838
BmiI GGNNCC 5 cut(s) 137, 155, 156, 170, 321
BmrFI CCNGG 3 cut(s) 173, 587, 905
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 4 cut(s) 99, 901, 933, 988
BmuI ACTGGG 1 cut(s) 577
BpmI CTGGAG 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 82, 903
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 101
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 572, 623
BseBI CCWGG 2 cut(s) 587, 905
BseDI CCNNGG 2 cut(s) 82, 903
BseGI GGATG 2 cut(s) 760, 892
BseLI CCNNNNNNNGG 2 cut(s) 32, 101
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 572, 623
BsePI GCGCGC 1 cut(s) 124
BseRI GAGGAG 5 cut(s) 47, 203, 320, 412, 785
BseXI GCAGC 3 cut(s) 661, 692, 908
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 976
Bsh1236I CGCG 3 cut(s) 107, 126, 182
BshFI GGCC 4 cut(s) 87, 585, 1060, 1068
BshNI GGYRCC 2 cut(s) 135, 319
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 67, 172
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 32, 101
BsmAI GTCTC 2 cut(s) 139, 689
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 923
BsnI GGCC 4 cut(s) 87, 585, 1060, 1068
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 748, 889
BspANI GGCC 4 cut(s) 87, 585, 1060, 1068
BspCNI CTCAG 1 cut(s) 288
BspFNI CGCG 3 cut(s) 107, 126, 182
BspHI TCATGA 1 cut(s) 858
BspLI GGNNCC 5 cut(s) 137, 155, 156, 170, 321
BspMI ACCTGC 2 cut(s) 255, 1037
BspT107I GGYRCC 2 cut(s) 135, 319
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 2 cut(s) 572, 623
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 82, 903
BssHII GCGCGC 1 cut(s) 124
BssMI GATC 2 cut(s) 748, 889
BssNI GRCGYC 1 cut(s) 136
BssSI CACGAG 1 cut(s) 1062
Bst2BI CACGAG 1 cut(s) 1062
Bst2UI CCWGG 2 cut(s) 587, 905
Bst4CI ACNGT 2 cut(s) 96, 286
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 136
BstC8I GCNNGC 7 cut(s) 68, 89, 126, 130, 134, 231, 977
BstDEI CTNAG 1 cut(s) 296
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 760, 892
BstFNI CGCG 3 cut(s) 107, 126, 182
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 5 cut(s) 81, 107, 126, 128, 138
BstKTI GATC 2 cut(s) 751, 892
BstMAI GTCTC 2 cut(s) 139, 689
BstMBI GATC 2 cut(s) 748, 889
BstMWI GCNNNNNNNGC 6 cut(s) 76, 97, 121, 319, 927, 1038
BstNI CCWGG 2 cut(s) 587, 905
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 3 cut(s) 171, 585, 903
BstUI CGCG 3 cut(s) 107, 126, 182
BstV1I GCAGC 3 cut(s) 661, 692, 908
BstXI CCANNNNNNTGG 2 cut(s) 241, 514
BsuRI GGCC 4 cut(s) 87, 585, 1060, 1068
BtgI CCRYGG 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 122
BtsCI GGATG 2 cut(s) 760, 892
BtsI GCAGTG 1 cut(s) 988
BtsIMutI CAGTG 2 cut(s) 282, 988
BveI ACCTGC 2 cut(s) 255, 1037
Cac8I GCNNGC 7 cut(s) 68, 89, 126, 130, 134, 231, 977
CciI TCATGA 1 cut(s) 858
CfoI GCGC 5 cut(s) 81, 107, 126, 128, 138
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 5 cut(s) 86, 154, 169, 244, 838
Csp6I GTAC 3 cut(s) 37, 346, 940
CviAII CATG 7 cut(s) 76, 368, 479, 532, 717, 859, 1073
CviQI GTAC 3 cut(s) 37, 346, 940
DdeI CTNAG 1 cut(s) 296
DinI GGCGCC 1 cut(s) 137
DpnI GATC 2 cut(s) 750, 891
DpnII GATC 2 cut(s) 748, 889
EaeI YGGCCR 2 cut(s) 583, 1066
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 1060
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 4 cut(s) 154, 169, 244, 838
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 870
EcoICRI GAGCTC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 585, 903
EcoT22I ATGCAT 1 cut(s) 722
EcoT38I GRGCYC 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 137
EheI GGCGCC 1 cut(s) 137
FaeI CATG 7 cut(s) 79, 371, 482, 535, 720, 862, 1076
FaqI GGGAC 1 cut(s) 167
FatI CATG 7 cut(s) 75, 367, 478, 531, 716, 858, 1072
FauI CCCGC 6 cut(s) 93, 96, 125, 144, 238, 403
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 7 cut(s) 71, 113, 183, 387, 675, 706, 922
FokI GGATG 2 cut(s) 767, 879
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 7 cut(s) 71, 113, 183, 387, 675, 706, 922
FspBI CTAG 2 cut(s) 600, 638
GlaI GCGC 5 cut(s) 80, 106, 125, 127, 137
GluI GCNGC 7 cut(s) 71, 113, 183, 387, 675, 706, 922
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 536
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 4 cut(s) 87, 585, 1060, 1068
HapII CCGG 2 cut(s) 67, 172
HhaI GCGC 5 cut(s) 81, 107, 126, 128, 138
Hin1I GRCGYC 1 cut(s) 136
Hin1II CATG 7 cut(s) 79, 371, 482, 535, 720, 862, 1076
Hin6I GCGC 5 cut(s) 79, 105, 124, 126, 136
HinP1I GCGC 5 cut(s) 79, 105, 124, 126, 136
HinfI GANTC 2 cut(s) 518, 855
HpaII CCGG 2 cut(s) 67, 172
HphI GGTGA 6 cut(s) 14, 485, 496, 597, 754, 845
Hpy166II GTNNAC 4 cut(s) 16, 282, 605, 940
Hpy188I TCNGA 3 cut(s) 803, 850, 1082
Hpy188III TCNNGA 4 cut(s) 242, 515, 752, 859
Hpy8I GTNNAC 4 cut(s) 16, 282, 605, 940
Hpy99I CGWCG 2 cut(s) 53, 163
HpyAV CCTTC 3 cut(s) 664, 798, 845
HpyCH4III ACNGT 2 cut(s) 96, 286
HpyCH4V TGCA 7 cut(s) 698, 720, 881, 924, 993, 999, 1041
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 97, 121, 319, 927, 1038
HpyF3I CTNAG 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 136
Hsp92II CATG 7 cut(s) 79, 371, 482, 535, 720, 862, 1076
HspAI GCGC 5 cut(s) 79, 105, 124, 126, 136
KasI GGCGCC 1 cut(s) 135
KflI GGGWCCC 1 cut(s) 154
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
Kzo9I GATC 2 cut(s) 748, 889
LmnI GCTCC 3 cut(s) 60, 190, 950
Lsp1109I GCAGC 3 cut(s) 661, 692, 908
LweI GCATC 4 cut(s) 99, 901, 933, 988
MaeI CTAG 2 cut(s) 600, 638
MaeIII GTNAC 4 cut(s) 742, 812, 869, 1011
MalI GATC 2 cut(s) 750, 891
MboI GATC 2 cut(s) 748, 889
MboII GAAGA 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 57
MlsI TGGCCA 1 cut(s) 585
MluCI AATT 5 cut(s) 7, 237, 256, 693, 797
MluNI TGGCCA 1 cut(s) 585
Mly113I GGCGCC 1 cut(s) 136
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 2 cut(s) 439, 670
Mox20I TGGCCA 1 cut(s) 585
Mph1103I ATGCAT 1 cut(s) 722
MroNI GCCGGC 1 cut(s) 66
MscI TGGCCA 1 cut(s) 585
MseI TTAA 2 cut(s) 576, 1055
MslI CAYNNNNRTG 1 cut(s) 1020
Msp20I TGGCCA 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 2 cut(s) 67, 172
MspR9I CCNGG 3 cut(s) 173, 587, 905
Mva1269I GAATGC 1 cut(s) 923
MvaI CCWGG 2 cut(s) 587, 905
MvnI CGCG 3 cut(s) 107, 126, 182
MwoI GCNNNNNNNGC 6 cut(s) 76, 97, 121, 319, 927, 1038
NaeI GCCGGC 1 cut(s) 68
NarI GGCGCC 1 cut(s) 136
NciI CCSGG 1 cut(s) 173
NdeII GATC 2 cut(s) 748, 889
NgoMIV GCCGGC 1 cut(s) 66
NlaIII CATG 7 cut(s) 79, 371, 482, 535, 720, 862, 1076
NlaIV GGNNCC 5 cut(s) 137, 155, 156, 170, 321
NmuCI GTSAC 2 cut(s) 742, 869
NsiI ATGCAT 1 cut(s) 722
NspI RCATGY 1 cut(s) 535
PagI TCATGA 1 cut(s) 858
PalAI GGCGCGCC 1 cut(s) 124
PauI GCGCGC 1 cut(s) 124
PceI AGGCCT 1 cut(s) 1060
PctI GAATGC 1 cut(s) 923
PdiI GCCGGC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 855
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 7 cut(s) 72, 114, 184, 388, 676, 707, 923
PleI GAGTC 1 cut(s) 526
PluTI GGCGCC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 526
PpuMI RGGWCCY 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 57
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 585, 903
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 2 cut(s) 585, 903
PspN4I GGNNCC 5 cut(s) 137, 155, 156, 170, 321
PspPI GGNCC 5 cut(s) 86, 154, 169, 244, 838
PspPPI RGGWCCY 1 cut(s) 154
PteI GCGCGC 1 cut(s) 124
RsaI GTAC 3 cut(s) 38, 347, 941
RsaNI GTAC 3 cut(s) 37, 346, 940
RseI CAYNNNNRTG 1 cut(s) 1020
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 576, 1055
SatI GCNGC 7 cut(s) 71, 113, 183, 387, 675, 706, 922
Sau3AI GATC 2 cut(s) 748, 889
Sau96I GGNCC 5 cut(s) 86, 154, 169, 244, 838
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 3 cut(s) 173, 587, 905
SduI GDGCHC 1 cut(s) 57
SetI ASST 8 cut(s) 57, 195, 212, 249, 466, 610, 840, 1031
SfaNI GCATC 4 cut(s) 99, 901, 933, 988
SfoI GGCGCC 1 cut(s) 137
SgsI GGCGCGCC 1 cut(s) 124
SinI GGWCC 4 cut(s) 154, 169, 244, 838
SmiMI CAYNNNNRTG 1 cut(s) 1020
Sse9I AATT 5 cut(s) 7, 237, 256, 693, 797
SseBI AGGCCT 1 cut(s) 1060
SspDI GGCGCC 1 cut(s) 135
SspMI CTAG 2 cut(s) 600, 638
SstI GAGCTC 1 cut(s) 57
StuI AGGCCT 1 cut(s) 1060
StyD4I CCNGG 3 cut(s) 171, 585, 903
TaaI ACNGT 2 cut(s) 96, 286
TaqI TCGA 1 cut(s) 224
TaqII GACCGA 1 cut(s) 878
TasI AATT 5 cut(s) 7, 237, 256, 693, 797
TauI GCSGC 4 cut(s) 73, 115, 185, 389
TfiI GAWTC 1 cut(s) 855
Tru1I TTAA 2 cut(s) 576, 1055
Tru9I TTAA 2 cut(s) 576, 1055
TscAI CASTG 2 cut(s) 289, 995
TseFI GTSAC 2 cut(s) 742, 869
TseI GCWGC 3 cut(s) 674, 705, 921
Tsp45I GTSAC 2 cut(s) 742, 869
TspDTI ATGAA 7 cut(s) 20, 356, 528, 621, 646, 847, 1089
TspGWI ACGGA 1 cut(s) 833
TspRI CASTG 2 cut(s) 289, 995
VpaK11BI GGWCC 4 cut(s) 154, 169, 244, 838
XapI RAATTY 3 cut(s) 7, 256, 797
XceI RCATGY 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 600, 638
Zsp2I ATGCAT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.