Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008040

Physical Location & Seq

Genomic Coordinates Forward (+)

7489196 .. 7492150

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTTCAGCTCAACCCAACACCCCCCTTCTCCCTCCGACGCCGCCTCGTCGCCGCTTCTCAGCAACTCCCTCGCCGACAACCTCCTCCGCAGCCGCCGCCTCATCCGCCAGCCGCCGCGCCCTCTCCGCGGCGCGGCCCGCTTCCTCCGCCGCGCCAGCGGCCGCCGCATGAGGCTTCGAGAGCCTTCGGTCCGGGTTCGCGAGTCCGCCGCGGAGCAGCTGGAGGAGCGGCAGAGTGATTGGGCCTACTCCCGGCCCATTGTGGTGCTGGACCTGCTGTGGAACGCCGTGCTGCTCGGGATTGGGCTCGCCGTGCTTTGGTTTAGCTATGAGGAAAGCCCTGAGGTTCCTTTGAGGGTGTGGATTGGCGGCTACGCGCTGCAGTGCGCGGTGCATATGTTCTGTGTGGGCGTCGAGTGCACGCGGCGGCGGGGCGTGGGGGAGGGGGAGGTGGGGCGGGTGGCCGTGGAGGAAGGGAGTCCTCAGTGGGAGAGTTCTTCTGGTTCTGGGAGTGATGAGAGTGAAGATTATGGAATGGAGCAGAGCTTGGAATATAGTGCCACAAGTTTTGCAAAGAATTTGGAGTCTGCAAACACCATGTTTTCGTTTATCTGGTGGATTCTTGGGTTCTACTGGGTGACTGCTGGCGGTGAAAGTTTGACGACTGACTCTCCTCAATTATACTGGATCACTATCACTTTTCTGGCTTTGGACGTCGTTTTTGTTGTGATTTGCGTTGCCGTTGCATCCCTCATTGGTATAGCTGTTTGCTTCTGTCTGCCGTGCATCATTGCCATCTTATATGTCGTGACAGATCAGGAAGGAGCAACTAAGGAAGAGATCGATCATTTGCCAAAGTACAAGTTCCGCAAGATATCTGATTTTGAGAAAGTTAATGGTGAAATCCAAGACTCTTTTGGAGGAATAATGACCGAATGTGACACTGATGCACCAACGGAACATGCTCTCTCCCAAGAGGATGCTGAATGCTGCATCTGCCTTTGTGCCTATGATGATGGAACCGAACTGCGTGAGCTTCCTTGCCGTCATCATTTTCACTGCACCTGCATAGATAAATGGTTACAGATCAATGCCACCTGCCCGCTCTGCAAGTTCAACATTCTGAAGTCTGCTAGTCAGAGTAGCAGTGAAGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

386

Amino Acids

43.05

Weight (kDa)

4.92

Isoelectric Point (pI)

67.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	329 - 371	1e-13	Ring finger domain
zf-RING_11	PF17123	329 - 357	3.2e-07	RING-like zinc finger
zf-rbx1	PF12678	329 - 371	1.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61180
fragaria_vesca	FvH4_3g08230
malus_domestica	MD01G1049700.v1.1 MD05G1306100.v1.1 MD07G1126700.v1.1 MD07G1126800.v1.1 MD10G1285100.v1.1
prunus_persica	Prupe.2G157200_v2.0.a1 Prupe.4G056500_v2.0.a1
pyrus_communis	pycom01g07470 pycom05g28320 pycom07g12230 pycom07g12310 pycom10g23820
rosa_chinensis	RchiOBHm_Chr5g0009921
rosa_laevigata	RLG00000031710
rosa_multiflora	Rmu_sc0001709.1_g000014
rosa_roxburghii	Rroxscaffold_1G00066260
rosa_rugosa	Rorug04G0446900
rosa_samantha	Rh5AG078500 Rh5BG073400 Rh5CG085800 Rh5DG073900
rosa_wichuraiana	Rw5G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1073, 1106
AatII	GACGTC	1 cut(s)	717
Acc36I	ACCTGC	3 cut(s)	282, 1073, 1106
AccBSI	CCGCTC	2 cut(s)	229, 1105
AccII	CGCG	9 cut(s)	118, 129, 134, 153, 201, 212, 377, 389, 424
AclWI	GGATC	1 cut(s)	695
AcoI	YGGCCR	2 cut(s)	160, 462
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	1145
AcyI	GRCGYC	3 cut(s)	39, 411, 714
AfaI	GTAC	1 cut(s)	860
AfiI	CCNNNNNNNGG	4 cut(s)	128, 133, 252, 318
AgsI	TTSAA	1 cut(s)	1117
AluBI	AGCT	6 cut(s)	9, 220, 327, 546, 764, 1036
AluI	AGCT	6 cut(s)	9, 220, 327, 546, 764, 1036
Alw21I	GWGCWC	1 cut(s)	422
Alw44I	GTGCAC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	5 cut(s)	135, 160, 243, 254, 462
ApaLI	GTGCAC	1 cut(s)	418
ApeKI	GCWGC	5 cut(s)	90, 217, 292, 379, 990
ApoI	RAATTY	1 cut(s)	577
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
AspLEI	GCGC	5 cut(s)	120, 134, 155, 379, 389
AspS9I	GGNCC	5 cut(s)	136, 190, 243, 255, 271
AsuC2I	CCSGG	2 cut(s)	194, 253
AsuHPI	GGTGA	3 cut(s)	649, 662, 911
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	2 cut(s)	190, 271
AxyI	CCTNAGG	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	5 cut(s)	102, 229, 279, 366, 977
BccI	CCATC	2 cut(s)	803, 1010
BceAI	ACGGC	6 cut(s)	272, 296, 449, 725, 766, 1029
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BcnI	CCSGG	2 cut(s)	194, 253
BfaI	CTAG	1 cut(s)	1134
BfmI	CTRYAG	1 cut(s)	380
BfuAI	ACCTGC	3 cut(s)	282, 1073, 1106
Bme1390I	CCNGG	2 cut(s)	194, 253
Bme18I	GGWCC	2 cut(s)	190, 271
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	5 cut(s)	136, 190, 243, 255, 271
BmiI	GGNNCC	2 cut(s)	348, 1021
BmrFI	CCNGG	2 cut(s)	194, 253
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	5 cut(s)	755, 795, 937, 970, 1002
BmuI	ACTGGG	1 cut(s)	643
BpmI	CTGGAG	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	194, 253
Bsa29I	ATCGAT	1 cut(s)	843
BsaBI	GATNNNNATC	1 cut(s)	692
BsaHI	GRCGYC	3 cut(s)	39, 411, 714
BsaJI	CCNNGG	3 cut(s)	127, 210, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 133, 252, 318
Bse1I	ACTGG	2 cut(s)	638, 689
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	789
Bse8I	GATNNNNATC	1 cut(s)	692
BseCI	ATCGAT	1 cut(s)	843
BseDI	CCNNGG	3 cut(s)	127, 210, 465
BseGI	GGATG	3 cut(s)	102, 746, 985
BseJI	GATNNNNATC	1 cut(s)	692
BseLI	CCNNNNNNNGG	4 cut(s)	128, 133, 252, 318
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	3 cut(s)	73, 333, 497
BseNI	ACTGG	2 cut(s)	638, 689
BseRI	GAGGAG	3 cut(s)	74, 239, 663
BseSI	GKGCMC	1 cut(s)	422
BseX3I	CGGCCG	1 cut(s)	160
BseXI	GCAGC	5 cut(s)	102, 229, 279, 366, 977
BsgI	GTGCAG	1 cut(s)	1045
Bsh1236I	CGCG	9 cut(s)	118, 129, 134, 153, 201, 212, 377, 389, 424
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	5 cut(s)	137, 162, 245, 256, 464
BshVI	ATCGAT	1 cut(s)	843
BsiEI	CGRYCG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	422
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	2 cut(s)	193, 253
BslI	CCNNNNNNNGG	4 cut(s)	128, 133, 252, 318
BsmI	GAATGC	1 cut(s)	992
BsnI	GGCC	5 cut(s)	137, 162, 245, 256, 464
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	309, 422
Bsp143I	GATC	5 cut(s)	687, 814, 840, 844, 1086
Bsp68I	TCGCGA	1 cut(s)	201
BspANI	GGCC	5 cut(s)	137, 162, 245, 256, 464
BspCNI	CTCAG	3 cut(s)	72, 334, 496
BspDI	ATCGAT	1 cut(s)	843
BspFNI	CGCG	9 cut(s)	118, 129, 134, 153, 201, 212, 377, 389, 424
BspLI	GGNNCC	2 cut(s)	348, 1021
BspMAI	CTGCAG	1 cut(s)	384
BspMI	ACCTGC	3 cut(s)	282, 1073, 1106
BspPI	GGATC	1 cut(s)	695
BsrBI	CCGCTC	2 cut(s)	229, 1105
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	2 cut(s)	638, 689
BssECI	CCNNGG	3 cut(s)	127, 210, 465
BssMI	GATC	5 cut(s)	687, 814, 840, 844, 1086
BssNI	GRCGYC	3 cut(s)	39, 411, 714
Bst6I	CTCTTC	2 cut(s)	831, 1146
BstACI	GRCGYC	3 cut(s)	39, 411, 714
BstC8I	GCNNGC	7 cut(s)	110, 139, 157, 309, 422, 646, 1103
BstDEI	CTNAG	4 cut(s)	59, 342, 483, 831
BstDSI	CCRYGG	3 cut(s)	127, 210, 465
BstF5I	GGATG	3 cut(s)	102, 746, 985
BstFNI	CGCG	9 cut(s)	118, 129, 134, 153, 201, 212, 377, 389, 424
BstHHI	GCGC	5 cut(s)	120, 134, 155, 379, 389
BstKTI	GATC	5 cut(s)	690, 817, 843, 847, 1089
BstMBI	GATC	5 cut(s)	687, 814, 840, 844, 1086
BstMCI	CGRYCG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	965
BstSCI	CCNGG	2 cut(s)	192, 251
BstSFI	CTRYAG	1 cut(s)	380
BstSLI	GKGCMC	1 cut(s)	422
BstUI	CGCG	9 cut(s)	118, 129, 134, 153, 201, 212, 377, 389, 424
BstV1I	GCAGC	5 cut(s)	102, 229, 279, 366, 977
BstZI	CGGCCG	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	843
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	5 cut(s)	137, 162, 245, 256, 464
BsuTUI	ATCGAT	1 cut(s)	843
BtgI	CCRYGG	3 cut(s)	127, 210, 465
BtsCI	GGATG	3 cut(s)	102, 746, 985
BtsI	GCAGTG	3 cut(s)	389, 1057, 1153
BtsIMutI	CAGTG	5 cut(s)	389, 491, 942, 1057, 1153
BtuMI	TCGCGA	1 cut(s)	201
BveI	ACCTGC	3 cut(s)	282, 1073, 1106
Cac8I	GCNNGC	7 cut(s)	110, 139, 157, 309, 422, 646, 1103
CciNI	GCGGCCGC	1 cut(s)	160
CfoI	GCGC	5 cut(s)	120, 134, 155, 379, 389
Cfr13I	GGNCC	5 cut(s)	136, 190, 243, 255, 271
Cfr42I	CCGCGG	2 cut(s)	130, 213
ClaI	ATCGAT	1 cut(s)	843
CpoI	CGGWCCG	1 cut(s)	190
CseI	GACGC	2 cut(s)	47, 400
Csp6I	GTAC	1 cut(s)	859
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CspI	CGGWCCG	1 cut(s)	190
CviAII	CATG	3 cut(s)	169, 598, 962
CviQI	GTAC	1 cut(s)	859
DdeI	CTNAG	4 cut(s)	59, 342, 483, 831
DpnI	GATC	5 cut(s)	689, 816, 842, 846, 1088
DpnII	GATC	5 cut(s)	687, 814, 840, 844, 1086
EaeI	YGGCCR	2 cut(s)	160, 462
EagI	CGGCCG	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	831, 1146
EarI	CTCTTC	2 cut(s)	831, 1146
EciI	GGCGGA	3 cut(s)	95, 137, 196
EclXI	CGGCCG	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	2 cut(s)	190, 271
Eco52I	CGGCCG	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	1145
Eco81I	CCTNAGG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	876
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	3 cut(s)	172, 601, 965
FatI	CATG	3 cut(s)	168, 597, 961
FauI	CCCGC	4 cut(s)	146, 423, 450, 1110
FauNDI	CATATG	1 cut(s)	396
FokI	GGATG	3 cut(s)	89, 733, 992
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	1134
GlaI	GCGC	5 cut(s)	119, 133, 154, 378, 388
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	5 cut(s)	137, 162, 245, 256, 464
HapII	CCGG	2 cut(s)	193, 253
HgaI	GACGC	2 cut(s)	47, 400
HhaI	GCGC	5 cut(s)	120, 134, 155, 379, 389
Hin1I	GRCGYC	3 cut(s)	39, 411, 714
Hin1II	CATG	3 cut(s)	172, 601, 965
Hin6I	GCGC	5 cut(s)	118, 132, 153, 377, 387
HinP1I	GCGC	5 cut(s)	118, 132, 153, 377, 387
HinfI	GANTC	6 cut(s)	203, 478, 584, 619, 668, 911
HpaII	CCGG	2 cut(s)	193, 253
HphI	GGTGA	3 cut(s)	649, 662, 911
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	37, 880, 1125, 1140
Hpy188III	TCNNGA	5 cut(s)	179, 200, 298, 808, 818
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	4 cut(s)	41, 52, 416, 719
HpyAV	CCTTC	4 cut(s)	36, 195, 467, 815
HpyCH4IV	ACGT	1 cut(s)	714
HpyF3I	CTNAG	4 cut(s)	59, 342, 483, 831
HpySE526I	ACGT	1 cut(s)	714
Hsp92I	GRCGYC	3 cut(s)	39, 411, 714
Hsp92II	CATG	3 cut(s)	172, 601, 965
HspAI	GCGC	5 cut(s)	118, 132, 153, 377, 387
KspI	CCGCGG	2 cut(s)	130, 213
Kzo9I	GATC	5 cut(s)	687, 814, 840, 844, 1086
LmnI	GCTCC	4 cut(s)	214, 226, 538, 824
Lsp1109I	GCAGC	5 cut(s)	102, 229, 279, 366, 977
LweI	GCATC	5 cut(s)	755, 795, 937, 970, 1002
MaeI	CTAG	1 cut(s)	1134
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	4 cut(s)	637, 808, 938, 1080
MalI	GATC	5 cut(s)	689, 816, 842, 846, 1088
MbiI	CCGCTC	2 cut(s)	229, 1105
MboI	GATC	5 cut(s)	687, 814, 840, 844, 1086
MboII	GAAGA	3 cut(s)	489, 536, 848
MhlI	GDGCHC	2 cut(s)	309, 422
MluCI	AATT	2 cut(s)	577, 677
MlyI	GAGTC	5 cut(s)	212, 487, 593, 662, 905
MmeI	TCCRAC	1 cut(s)	60
MseI	TTAA	1 cut(s)	894
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	4 cut(s)	129, 159, 212, 220
MspI	CCGG	2 cut(s)	193, 253
MspR9I	CCNGG	2 cut(s)	194, 253
Mva1269I	GAATGC	1 cut(s)	992
MvnI	CGCG	9 cut(s)	118, 129, 134, 153, 201, 212, 377, 389, 424
NciI	CCSGG	2 cut(s)	194, 253
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	5 cut(s)	687, 814, 840, 844, 1086
NlaIII	CATG	3 cut(s)	172, 601, 965
NlaIV	GGNNCC	2 cut(s)	348, 1021
NmuCI	GTSAC	3 cut(s)	637, 808, 938
NotI	GCGGCCGC	1 cut(s)	160
NruI	TCGCGA	1 cut(s)	201
NspI	RCATGY	1 cut(s)	965
PaqCI	CACCTGC	2 cut(s)	1073, 1106
PctI	GAATGC	1 cut(s)	992
PfeI	GAWTC	1 cut(s)	619
PleI	GAGTC	5 cut(s)	211, 486, 592, 662, 905
PpsI	GAGTC	5 cut(s)	211, 486, 592, 662, 905
PspN4I	GGNNCC	2 cut(s)	348, 1021
PspPI	GGNCC	5 cut(s)	136, 190, 243, 255, 271
PstI	CTGCAG	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	220
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	1 cut(s)	860
RsaNI	GTAC	1 cut(s)	859
RseI	CAYNNNNRTG	1 cut(s)	263
Rsr2I	CGGWCCG	1 cut(s)	190
RsrII	CGGWCCG	1 cut(s)	190
SacII	CCGCGG	2 cut(s)	130, 213
SaqAI	TTAA	1 cut(s)	894
Sau3AI	GATC	5 cut(s)	687, 814, 840, 844, 1086
Sau96I	GGNCC	5 cut(s)	136, 190, 243, 255, 271
SchI	GAGTC	5 cut(s)	212, 487, 593, 662, 905
ScrFI	CCNGG	2 cut(s)	194, 253
SduI	GDGCHC	2 cut(s)	309, 422
SfaNI	GCATC	5 cut(s)	755, 795, 937, 970, 1002
SfcI	CTRYAG	1 cut(s)	380
Sfr303I	CCGCGG	2 cut(s)	130, 213
SgrBI	CCGCGG	2 cut(s)	130, 213
SinI	GGWCC	2 cut(s)	190, 271
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	577, 677
SspMI	CTAG	1 cut(s)	1134
StyD4I	CCNGG	2 cut(s)	192, 251
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	3 cut(s)	178, 414, 843
TaqII	GACCGA	2 cut(s)	178, 947
TasI	AATT	2 cut(s)	577, 677
TatI	WGTACW	1 cut(s)	858
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	1 cut(s)	894
Tru9I	TTAA	1 cut(s)	894
TscAI	CASTG	5 cut(s)	389, 491, 949, 1064, 1153
TseFI	GTSAC	3 cut(s)	637, 808, 938
TseI	GCWGC	5 cut(s)	90, 217, 292, 379, 990
Tsp45I	GTSAC	3 cut(s)	637, 808, 938
TspGWI	ACGGA	1 cut(s)	971
TspRI	CASTG	5 cut(s)	389, 491, 949, 1064, 1153
VneI	GTGCAC	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	190, 271
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	1 cut(s)	965
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 914
XspI	CTAG	1 cut(s)	1134
ZraI	GACGTC	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.