pycom01g07470

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
8390874 .. 8394325
3452 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07470.5

Sequence Viewer

Length: 1059 bp
ATGAATTCTGTAGACACTCACCCACTCATCGGCGACGAGCTCTTCCAAAACCGGCGGCTCATGCGGCACGGCCCGCCACCGTTGCGGGGCGCGATGCGAATCCTTTCGCGCGTCAGCGGGCGCCGAATGAGGCTGCGCGAGCCGTCGGTTCGGGTCCGGGAGAACGCGTTGGAGGAGCTGGAAGAGCGGCAGAATTTCTGGGCTTACTCGAAGCCCACCATAATTCTGGACCTGCTGTGGAATTTGGTTTTCGTGATTGTTGGGTTCAGTGTGCTGGGGCTGAGCGTGGAGGAGAAGCCATTGGTGCCTCTGAGGATTTGGGTTGTTGGGTACATTTTGCTGTGTGTTGTTCATGTTGGGTGTGTGGTTGCGCAGTATCGGAGGAGTATTGGGAGTGAGAGTTCGGGGTCAGGGGGTAATGTTGGGGGTTATGGGGGTGAGCATGGTCTGGCTGATGATGAGACAAGTGTCACCACGAGTCTGGAGTCAGCCATTAGCATGTTTTCATTTATATGGTGGAGCATTGGCTTCTACTGGGTGCTTAATGGCGGCCAGACTTTGCTATCCAGTTCACCTCGCCTTTACTGGCTCTGTGTTTCATTTCTAGTTTTTGATGTCACCTTCATCATTGTATGTGTTGCTGCTTCATGTCTTGTTGGAATTGCAATCTGCTGCTTCCTTCCATGCATAATTGGAATCTTATGTGCTGTGACAGATCAGGATGGGGCAACAGAAGAAGAGATTGATGGATTGCCAAAGTTCAAATTCAGAAGGGTAGGTGACTCAGAGAAAGTTAATGGTGAGGTCCAAGCTTTTGAAGGATTCATGGTCGAATGTGACACCAATGCACCAACTGAGCGTCCTATTTCCCTGGTTGATGCTGAATGCTGCATCTGCCTTTCTGTCTACGAGAATGGAGCAGAACTACGCGAGCTTCCTTGCCTTCATCACTTTCACTGCACTTGCATAGACAAATGGTTACATATCAATGCTATCTGCCCTATGTGTAAGTTCAACATTTTGAAGCCTCATGACCGACGTGAAATCGGGCAAGTGTAA

Protein Analysis

353

Amino Acids

39.34

Weight (kDa)

5.54

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 240
AccB1I GGYRCC 2 cut(s) 120, 304
AccBSI CCGCTC 1 cut(s) 187
AccI GTMKAC 2 cut(s) 12, 906
AccII CGCG 6 cut(s) 92, 109, 111, 138, 167, 930
AciI CCGC 7 cut(s) 55, 64, 74, 85, 117, 187, 549
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 4 cut(s) 4, 193, 241, 764
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 29, 86
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 4 cut(s) 763, 818, 1015, 1024
AjiI CACGTC 1 cut(s) 1040
AjnI CCWGG 1 cut(s) 870
AloI GAACNNNNNNTCC 2 cut(s) 385, 417
AluBI AGCT 4 cut(s) 40, 178, 812, 934
AluI AGCT 4 cut(s) 40, 178, 812, 934
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 455
AoxI GGCC 2 cut(s) 70, 550
ApeKI GCWGC 4 cut(s) 133, 641, 672, 888
ApoI RAATTY 4 cut(s) 4, 193, 241, 764
Asp700I GAANNNNTTC 1 cut(s) 103
AspLEI GCGC 5 cut(s) 92, 111, 123, 138, 373
AspS9I GGNCC 4 cut(s) 71, 154, 229, 805
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 7 cut(s) 11, 449, 463, 564, 610, 791, 812
AvaII GGWCC 3 cut(s) 154, 229, 805
BanI GGYRCC 2 cut(s) 120, 304
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 4 cut(s) 120, 628, 659, 875
BccI CCATC 2 cut(s) 716, 740
BceAI ACGGC 2 cut(s) 85, 127
BciT130I CCWGG 1 cut(s) 872
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 240
BisI GCNGC 8 cut(s) 56, 65, 134, 188, 550, 642, 673, 889
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 8 cut(s) 57, 66, 135, 189, 551, 643, 674, 890
Bme1390I CCNGG 2 cut(s) 158, 872
Bme18I GGWCC 3 cut(s) 154, 229, 805
BmgBI CACGTC 1 cut(s) 1040
BmgT120I GGNCC 4 cut(s) 71, 154, 229, 805
BmiI GGNNCC 3 cut(s) 122, 155, 306
BmrFI CCNGG 2 cut(s) 158, 872
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 3 cut(s) 84, 868, 900
BmuI ACTGGG 1 cut(s) 544
BoxI GACNNNNGTC 1 cut(s) 467
BpmI CTGGAG 1 cut(s) 503
Bpu1102I GCTNAGC 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 870
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 385, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 86
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 3 cut(s) 539, 567, 590
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 1 cut(s) 872
BseDI CCNNGG 1 cut(s) 870
BseGI GGATG 1 cut(s) 727
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 2 cut(s) 29, 86
BseMII CTCAG 4 cut(s) 272, 302, 798, 846
BseNI ACTGG 3 cut(s) 539, 567, 590
BseRI GAGGAG 3 cut(s) 188, 305, 397
BseXI GCAGC 4 cut(s) 120, 628, 659, 875
BseYI CCCAGC 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 943
Bsh1236I CGCG 6 cut(s) 92, 109, 111, 138, 167, 930
BshFI GGCC 2 cut(s) 72, 552
BshNI GGYRCC 2 cut(s) 120, 304
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 2 cut(s) 52, 157
BslI CCNNNNNNNGG 2 cut(s) 29, 86
BsmAI GTCTC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 890
BsnI GGCC 2 cut(s) 72, 552
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 715
Bsp1720I GCTNAGC 1 cut(s) 281
BspACI CCGC 7 cut(s) 55, 64, 74, 85, 117, 187, 549
BspANI GGCC 2 cut(s) 72, 552
BspCNI CTCAG 4 cut(s) 273, 303, 797, 847
BspFNI CGCG 6 cut(s) 92, 109, 111, 138, 167, 930
BspHI TCATGA 1 cut(s) 1030
BspLI GGNNCC 3 cut(s) 122, 155, 306
BspMI ACCTGC 1 cut(s) 240
BspQI GCTCTTC 2 cut(s) 47, 177
BspT107I GGYRCC 2 cut(s) 120, 304
BsrBI CCGCTC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 3 cut(s) 539, 567, 590
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 870
BssMI GATC 1 cut(s) 715
BssNI GRCGYC 1 cut(s) 121
BssSI CACGAG 1 cut(s) 475
Bst2BI CACGAG 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 872
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 3 cut(s) 47, 177, 732
BstACI GRCGYC 1 cut(s) 121
BstC8I GCNNGC 4 cut(s) 74, 119, 140, 932
BstDEI CTNAG 4 cut(s) 281, 311, 784, 855
BstF5I GGATG 1 cut(s) 727
BstFNI CGCG 6 cut(s) 92, 109, 111, 138, 167, 930
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 5 cut(s) 92, 111, 123, 138, 373
BstKTI GATC 1 cut(s) 718
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 1 cut(s) 715
BstMWI GCNNNNNNNGC 8 cut(s) 61, 64, 73, 82, 139, 184, 304, 894
BstNI CCWGG 1 cut(s) 872
BstNSI RCATGY 1 cut(s) 502
BstPAI GACNNNNGTC 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 156, 870
BstSFI CTRYAG 1 cut(s) 9
BstUI CGCG 6 cut(s) 92, 109, 111, 138, 167, 930
BstV1I GCAGC 4 cut(s) 120, 628, 659, 875
BstXI CCANNNNNNTGG 2 cut(s) 226, 481
BsuRI GGCC 2 cut(s) 72, 552
BtgZI GCGATG 1 cut(s) 107
BtrI CACGTC 1 cut(s) 1040
BtsCI GGATG 1 cut(s) 727
BtsI GCAGTG 1 cut(s) 955
BtsIMutI CAGTG 2 cut(s) 274, 955
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 4 cut(s) 74, 119, 140, 932
CciI TCATGA 1 cut(s) 1030
CfoI GCGC 5 cut(s) 92, 111, 123, 138, 373
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 4 cut(s) 71, 154, 229, 805
CseI GACGC 2 cut(s) 100, 848
Csp6I GTAC 1 cut(s) 331
CviAII CATG 8 cut(s) 61, 353, 443, 499, 648, 684, 826, 1031
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 4 cut(s) 281, 311, 784, 855
DinI GGCGCC 1 cut(s) 122
DpnI GATC 1 cut(s) 717
DpnII GATC 1 cut(s) 715
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 3 cut(s) 47, 177, 732
EarI CTCTTC 3 cut(s) 47, 177, 732
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 3 cut(s) 154, 229, 805
Eco53kI GAGCTC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 870
EcoT22I ATGCAT 1 cut(s) 689
EcoT38I GRGCYC 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
FaeI CATG 8 cut(s) 64, 356, 446, 502, 651, 687, 829, 1034
FatI CATG 8 cut(s) 60, 352, 442, 498, 647, 683, 825, 1030
FauI CCCGC 3 cut(s) 78, 81, 110
FblI GTMKAC 2 cut(s) 12, 906
Fnu4HI GCNGC 8 cut(s) 56, 65, 134, 188, 550, 642, 673, 889
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 8 cut(s) 56, 65, 134, 188, 550, 642, 673, 889
FspBI CTAG 1 cut(s) 605
FspI TGCGCA 1 cut(s) 372
GlaI GCGC 5 cut(s) 91, 110, 122, 137, 372
GluI GCNGC 8 cut(s) 56, 65, 134, 188, 550, 642, 673, 889
GsaI CCCAGC 1 cut(s) 278
GsuI CTGGAG 1 cut(s) 503
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 2 cut(s) 72, 552
HapII CCGG 2 cut(s) 52, 157
HgaI GACGC 2 cut(s) 100, 848
HhaI GCGC 5 cut(s) 92, 111, 123, 138, 373
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 8 cut(s) 64, 356, 446, 502, 651, 687, 829, 1034
Hin6I GCGC 5 cut(s) 90, 109, 121, 136, 371
HinP1I GCGC 5 cut(s) 90, 109, 121, 136, 371
HindIII AAGCTT 1 cut(s) 810
HinfI GANTC 6 cut(s) 99, 478, 485, 696, 782, 822
HpaII CCGG 2 cut(s) 52, 157
HphI GGTGA 7 cut(s) 11, 449, 463, 564, 610, 791, 812
Hpy166II GTNNAC 3 cut(s) 13, 572, 907
Hpy188I TCNGA 4 cut(s) 312, 381, 770, 787
Hpy188III TCNNGA 5 cut(s) 227, 253, 482, 719, 1031
Hpy8I GTNNAC 3 cut(s) 13, 572, 907
Hpy99I CGWCG 3 cut(s) 38, 148, 1041
HpyAV CCTTC 5 cut(s) 631, 689, 765, 812, 953
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 1 cut(s) 1039
HpyCH4V TGCA 6 cut(s) 665, 687, 848, 891, 960, 966
HpyF10VI GCNNNNNNNGC 8 cut(s) 61, 64, 73, 82, 139, 184, 304, 894
HpyF3I CTNAG 4 cut(s) 281, 311, 784, 855
HpySE526I ACGT 1 cut(s) 1039
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 8 cut(s) 64, 356, 446, 502, 651, 687, 829, 1034
HspAI GCGC 5 cut(s) 90, 109, 121, 136, 371
KasI GGCGCC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 715
LguI GCTCTTC 2 cut(s) 47, 177
LmnI GCTCC 3 cut(s) 175, 519, 917
Lsp1109I GCAGC 4 cut(s) 120, 628, 659, 875
LweI GCATC 3 cut(s) 84, 868, 900
MaeI CTAG 1 cut(s) 605
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 6 cut(s) 469, 616, 709, 779, 836, 978
MalI GATC 1 cut(s) 717
MbiI CCGCTC 1 cut(s) 187
MboI GATC 1 cut(s) 715
MboII GAAGA 4 cut(s) 34, 194, 746, 749
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 7 cut(s) 4, 193, 222, 241, 660, 690, 764
MluI ACGCGT 1 cut(s) 165
Mly113I GGCGCC 1 cut(s) 121
MlyI GAGTC 3 cut(s) 487, 494, 776
MmeI TCCRAC 2 cut(s) 150, 637
MnlI CCTC 9 cut(s) 123, 166, 283, 306, 318, 375, 585, 796, 1038
Mph1103I ATGCAT 1 cut(s) 689
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 2 cut(s) 543, 795
MslI CAYNNNNRTG 3 cut(s) 497, 511, 987
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 2 cut(s) 52, 157
MspR9I CCNGG 2 cut(s) 158, 872
Mva1269I GAATGC 1 cut(s) 890
MvaI CCWGG 1 cut(s) 872
MvnI CGCG 6 cut(s) 92, 109, 111, 138, 167, 930
MwoI GCNNNNNNNGC 8 cut(s) 61, 64, 73, 82, 139, 184, 304, 894
NarI GGCGCC 1 cut(s) 121
NciI CCSGG 1 cut(s) 158
NdeII GATC 1 cut(s) 715
NlaIII CATG 8 cut(s) 64, 356, 446, 502, 651, 687, 829, 1034
NlaIV GGNNCC 3 cut(s) 122, 155, 306
NmuCI GTSAC 5 cut(s) 469, 616, 709, 779, 836
NsbI TGCGCA 1 cut(s) 372
NsiI ATGCAT 1 cut(s) 689
NspI RCATGY 1 cut(s) 502
PagI TCATGA 1 cut(s) 1030
PciSI GCTCTTC 2 cut(s) 47, 177
PctI GAATGC 1 cut(s) 890
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 3 cut(s) 99, 696, 822
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 8 cut(s) 57, 66, 135, 189, 551, 643, 674, 890
PleI GAGTC 3 cut(s) 486, 493, 776
PluTI GGCGCC 1 cut(s) 124
PpsI GAGTC 3 cut(s) 486, 493, 776
PshAI GACNNNNGTC 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 870
PspFI CCCAGC 1 cut(s) 274
PspGI CCWGG 1 cut(s) 870
PspN4I GGNNCC 3 cut(s) 122, 155, 306
PspPI GGNCC 4 cut(s) 71, 154, 229, 805
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 3 cut(s) 497, 511, 987
SacI GAGCTC 1 cut(s) 42
SapI GCTCTTC 2 cut(s) 47, 177
SaqAI TTAA 2 cut(s) 543, 795
SatI GCNGC 8 cut(s) 56, 65, 134, 188, 550, 642, 673, 889
Sau3AI GATC 1 cut(s) 715
Sau96I GGNCC 4 cut(s) 71, 154, 229, 805
SchI GAGTC 3 cut(s) 487, 494, 776
ScrFI CCNGG 2 cut(s) 158, 872
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 3 cut(s) 84, 868, 900
SfcI CTRYAG 1 cut(s) 9
SfoI GGCGCC 1 cut(s) 122
SinI GGWCC 3 cut(s) 154, 229, 805
SmiMI CAYNNNNRTG 3 cut(s) 497, 511, 987
Sse9I AATT 7 cut(s) 4, 193, 222, 241, 660, 690, 764
SsiI CCGC 7 cut(s) 55, 64, 74, 85, 117, 187, 549
SspDI GGCGCC 1 cut(s) 120
SspMI CTAG 1 cut(s) 605
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 156, 870
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 2 cut(s) 209, 831
TaqII GACCGA 1 cut(s) 1050
TasI AATT 7 cut(s) 4, 193, 222, 241, 660, 690, 764
TauI GCSGC 4 cut(s) 58, 67, 190, 552
TfiI GAWTC 3 cut(s) 99, 696, 822
Tru1I TTAA 2 cut(s) 543, 795
Tru9I TTAA 2 cut(s) 543, 795
TscAI CASTG 2 cut(s) 274, 962
TseFI GTSAC 5 cut(s) 469, 616, 709, 779, 836
TseI GCWGC 4 cut(s) 133, 641, 672, 888
Tsp45I GTSAC 5 cut(s) 469, 616, 709, 779, 836
TspDTI ATGAA 8 cut(s) 17, 341, 495, 588, 613, 636, 814, 935
TspRI CASTG 2 cut(s) 274, 962
VpaK11BI GGWCC 3 cut(s) 154, 229, 805
XapI RAATTY 4 cut(s) 4, 193, 241, 764
XceI RCATGY 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmiI GTMKAC 2 cut(s) 12, 906
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 1 cut(s) 605
Zsp2I ATGCAT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.