Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008040

Physical Location & Seq

Genomic Coordinates Forward (+)

6110032 .. 6112883

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG073400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTTCAGCTCAACCCAACACCCCCCTTCTCCCTCCGACGCCGCCTCGTCGCCGCTTCTCAGCAACTCCCTCGCCGACAACCTCCTCCGCAGCCGCCGCCTCATCCGCCAGCCGCCGCGCCCTCTCCGCGGCGCGGCCCGCTTCCTCCGCCGCGCCAGCGGCCGCCGCATGAGGCTTCGAGAGCCTTCTGTCCGGGTTCGCGAGTCCGCGGCGGAGCAGCTGGAGGAGCGCCAGAGTGATTGGGCCTACTCCCGGCCCATTGTGGTGCTGGACCTGCTGTGGAACGCCGTGCTGCTCGGGATTGGGCTCGCCGTGCTTTGGTTTAGCTATGAGGAAAGCCCTGAGGTTCCTCTGAGGGTGTGGATTGGCGGCTACGCGCTGCAGTGCGCGGTGCATATGTTCTGTGTGGGCGTCGAGTGCACGCGGCGGCGGGGCGTGGGGGAGGGGGAGGGGGAGGTGGGGCGGGTGGCGGTGGAGGAAGGGAGTCCTCAGTGGGAGAGCTCTTCTGGTTCTGGGAGTGATGAGAGTGAAGATTATGGAATGGAGCAGAGCTTGGAATATAGTGCCACAAGTTTCGCAAAGAATTTGGAGTCTGCAAACACGATGTTTTCGTTTATCTGGTGGATTCTTGGGTTCTACTGGGTGACTGCTGGCGGTGAAAGTTTGACGACCGACTCCCCTCAATTATACTGGATCACTATCACTTTTCTGGCTTTGGACGTCGTTTTTGTTGTGATTTGCGTTGCCGTTGCATCCCTCATTGGTATAGCTGTTTGCTTCTGTCTGCCGTGCATCATTGCCATCTTATATGTCGTGACAGATCAGGAAGGAGCAACTAAGGAAGAGATCGATCATTTGCCAAAGTACAAGTTCCGCAAGATATCTGATTTTGAGAAAGTTAATGGTGAAATCCAAGACTCTTTTGGAGGAATAATGACCGAATGTGACACTGATGCGCCAGCGGAACATGCTCTCTCCCAAGAGGATGCTGAATGCTGCATCTGCCTTTGTGCCTATGATGATGGAACCGAACTGCGTGAGCTTCCTTGCCGTCATCATTTTCACTGCACCTGCATAGATAAATGGTTACAGATCAATGCCACCTGCCCGCTCTGCAAGTTCAACATTCTGAAGTCTGCTAGCCAGAGTAGCAGTGAAGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

388

Amino Acids

43.21

Weight (kDa)

4.88

Isoelectric Point (pI)

66.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	331 - 373	1e-13	Ring finger domain
zf-RING_11	PF17123	331 - 359	3.2e-07	RING-like zinc finger
zf-rbx1	PF12678	331 - 373	1.4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61180
fragaria_vesca	FvH4_3g08230
malus_domestica	MD01G1049700.v1.1 MD05G1306100.v1.1 MD07G1126700.v1.1 MD07G1126800.v1.1 MD10G1285100.v1.1
prunus_persica	Prupe.2G157200_v2.0.a1 Prupe.4G056500_v2.0.a1
pyrus_communis	pycom01g07470 pycom05g28320 pycom07g12230 pycom07g12310 pycom10g23820
rosa_chinensis	RchiOBHm_Chr5g0009921
rosa_laevigata	RLG00000031710
rosa_multiflora	Rmu_sc0001709.1_g000014
rosa_roxburghii	Rroxscaffold_1G00066260
rosa_rugosa	Rorug04G0446900
rosa_samantha	Rh5AG078500 Rh5BG073400 Rh5CG085800 Rh5DG073900
rosa_wichuraiana	Rw5G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1079, 1112
AatII	GACGTC	1 cut(s)	723
Acc36I	ACCTGC	3 cut(s)	282, 1079, 1112
AccBSI	CCGCTC	1 cut(s)	1111
AccII	CGCG	9 cut(s)	118, 129, 134, 153, 201, 209, 377, 389, 424
AclWI	GGATC	1 cut(s)	701
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	1 cut(s)	1151
AcyI	GRCGYC	3 cut(s)	39, 411, 720
AfaI	GTAC	1 cut(s)	866
AfiI	CCNNNNNNNGG	4 cut(s)	128, 133, 252, 318
AgsI	TTSAA	1 cut(s)	1123
AluBI	AGCT	7 cut(s)	9, 220, 327, 501, 552, 770, 1042
AluI	AGCT	7 cut(s)	9, 220, 327, 501, 552, 770, 1042
Alw21I	GWGCWC	2 cut(s)	422, 503
Alw44I	GTGCAC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	4 cut(s)	135, 160, 243, 254
ApaLI	GTGCAC	1 cut(s)	418
ApeKI	GCWGC	5 cut(s)	90, 217, 292, 379, 996
ApoI	RAATTY	1 cut(s)	583
ArsI	GACNNNNNNTTYG	2 cut(s)	710, 742
AspLEI	GCGC	7 cut(s)	120, 134, 155, 231, 379, 389, 958
AspS9I	GGNCC	4 cut(s)	136, 243, 255, 271
AsuC2I	CCSGG	2 cut(s)	194, 253
AsuHPI	GGTGA	3 cut(s)	655, 668, 917
AsuNHI	GCTAGC	1 cut(s)	1139
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	271
AxyI	CCTNAGG	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	422
BanII	GRGCYC	2 cut(s)	309, 503
Bbv12I	GWGCWC	2 cut(s)	422, 503
BbvI	GCAGC	5 cut(s)	102, 229, 279, 366, 983
BccI	CCATC	2 cut(s)	809, 1016
BceAI	ACGGC	5 cut(s)	272, 296, 731, 772, 1035
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BcnI	CCSGG	2 cut(s)	194, 253
BfaI	CTAG	1 cut(s)	1140
BfmI	CTRYAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	232
BfuAI	ACCTGC	3 cut(s)	282, 1079, 1112
Bme1390I	CCNGG	2 cut(s)	194, 253
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	4 cut(s)	136, 243, 255, 271
BmiI	GGNNCC	2 cut(s)	348, 1027
BmrFI	CCNGG	2 cut(s)	194, 253
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	5 cut(s)	761, 801, 943, 976, 1008
BmtI	GCTAGC	1 cut(s)	1143
BmuI	ACTGGG	1 cut(s)	649
BpmI	CTGGAG	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	194, 253
Bsa29I	ATCGAT	1 cut(s)	849
BsaBI	GATNNNNATC	1 cut(s)	698
BsaHI	GRCGYC	3 cut(s)	39, 411, 720
BsaJI	CCNNGG	2 cut(s)	127, 207
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 133, 252, 318
Bse1I	ACTGG	2 cut(s)	644, 695
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	795
Bse8I	GATNNNNATC	1 cut(s)	698
BseCI	ATCGAT	1 cut(s)	849
BseDI	CCNNGG	2 cut(s)	127, 207
BseGI	GGATG	3 cut(s)	102, 752, 991
BseJI	GATNNNNATC	1 cut(s)	698
BseLI	CCNNNNNNNGG	4 cut(s)	128, 133, 252, 318
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	4 cut(s)	73, 333, 344, 503
BseNI	ACTGG	2 cut(s)	644, 695
BseRI	GAGGAG	2 cut(s)	74, 239
BseSI	GKGCMC	1 cut(s)	422
BseX3I	CGGCCG	1 cut(s)	160
BseXI	GCAGC	5 cut(s)	102, 229, 279, 366, 983
BsgI	GTGCAG	1 cut(s)	1051
Bsh1236I	CGCG	9 cut(s)	118, 129, 134, 153, 201, 209, 377, 389, 424
Bsh1285I	CGRYCG	2 cut(s)	163, 672
BshFI	GGCC	4 cut(s)	137, 162, 245, 256
BshVI	ATCGAT	1 cut(s)	849
BsiEI	CGRYCG	2 cut(s)	163, 672
BsiHKAI	GWGCWC	2 cut(s)	422, 503
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	2 cut(s)	193, 253
BslI	CCNNNNNNNGG	4 cut(s)	128, 133, 252, 318
BsmI	GAATGC	1 cut(s)	998
BsnI	GGCC	4 cut(s)	137, 162, 245, 256
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	3 cut(s)	309, 422, 503
Bsp143I	GATC	5 cut(s)	693, 820, 846, 850, 1092
Bsp68I	TCGCGA	1 cut(s)	201
BspANI	GGCC	4 cut(s)	137, 162, 245, 256
BspCNI	CTCAG	4 cut(s)	72, 334, 345, 502
BspDI	ATCGAT	1 cut(s)	849
BspFNI	CGCG	9 cut(s)	118, 129, 134, 153, 201, 209, 377, 389, 424
BspLI	GGNNCC	2 cut(s)	348, 1027
BspMAI	CTGCAG	1 cut(s)	384
BspMI	ACCTGC	3 cut(s)	282, 1079, 1112
BspOI	GCTAGC	1 cut(s)	1143
BspPI	GGATC	1 cut(s)	701
BspQI	GCTCTTC	1 cut(s)	508
BsrBI	CCGCTC	1 cut(s)	1111
BsrDI	GCAATG	1 cut(s)	795
BsrI	ACTGG	2 cut(s)	644, 695
BssECI	CCNNGG	2 cut(s)	127, 207
BssMI	GATC	5 cut(s)	693, 820, 846, 850, 1092
BssNI	GRCGYC	3 cut(s)	39, 411, 720
Bst6I	CTCTTC	3 cut(s)	508, 837, 1152
BstACI	GRCGYC	3 cut(s)	39, 411, 720
BstC8I	GCNNGC	9 cut(s)	110, 139, 157, 309, 422, 652, 960, 1109, 1141
BstDEI	CTNAG	5 cut(s)	59, 342, 353, 489, 837
BstDSI	CCRYGG	2 cut(s)	127, 207
BstF5I	GGATG	3 cut(s)	102, 752, 991
BstFNI	CGCG	9 cut(s)	118, 129, 134, 153, 201, 209, 377, 389, 424
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	7 cut(s)	120, 134, 155, 231, 379, 389, 958
BstKTI	GATC	5 cut(s)	696, 823, 849, 853, 1095
BstMBI	GATC	5 cut(s)	693, 820, 846, 850, 1092
BstMCI	CGRYCG	2 cut(s)	163, 672
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	192, 251
BstSFI	CTRYAG	1 cut(s)	380
BstSLI	GKGCMC	1 cut(s)	422
BstUI	CGCG	9 cut(s)	118, 129, 134, 153, 201, 209, 377, 389, 424
BstV1I	GCAGC	5 cut(s)	102, 229, 279, 366, 983
BstZI	CGGCCG	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	849
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	4 cut(s)	137, 162, 245, 256
BsuTUI	ATCGAT	1 cut(s)	849
BtgI	CCRYGG	2 cut(s)	127, 207
BtsCI	GGATG	3 cut(s)	102, 752, 991
BtsI	GCAGTG	3 cut(s)	389, 1063, 1159
BtsIMutI	CAGTG	5 cut(s)	389, 497, 948, 1063, 1159
BtuMI	TCGCGA	1 cut(s)	201
BveI	ACCTGC	3 cut(s)	282, 1079, 1112
Cac8I	GCNNGC	9 cut(s)	110, 139, 157, 309, 422, 652, 960, 1109, 1141
CciNI	GCGGCCGC	1 cut(s)	160
CfoI	GCGC	7 cut(s)	120, 134, 155, 231, 379, 389, 958
Cfr13I	GGNCC	4 cut(s)	136, 243, 255, 271
Cfr42I	CCGCGG	2 cut(s)	130, 210
ClaI	ATCGAT	1 cut(s)	849
CseI	GACGC	2 cut(s)	47, 400
Csp6I	GTAC	1 cut(s)	865
CviAII	CATG	2 cut(s)	169, 968
CviQI	GTAC	1 cut(s)	865
DdeI	CTNAG	5 cut(s)	59, 342, 353, 489, 837
DpnI	GATC	5 cut(s)	695, 822, 848, 852, 1094
DpnII	GATC	5 cut(s)	693, 820, 846, 850, 1092
EaeI	YGGCCR	1 cut(s)	160
EagI	CGGCCG	1 cut(s)	160
Eam1104I	CTCTTC	3 cut(s)	508, 837, 1152
EarI	CTCTTC	3 cut(s)	508, 837, 1152
EciI	GGCGGA	3 cut(s)	95, 137, 227
Ecl136II	GAGCTC	1 cut(s)	501
EclXI	CGGCCG	1 cut(s)	160
Eco24I	GRGCYC	2 cut(s)	309, 503
Eco32I	GATATC	1 cut(s)	882
Eco47I	GGWCC	1 cut(s)	271
Eco52I	CGGCCG	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	1151
Eco81I	CCTNAGG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	882
EcoT38I	GRGCYC	2 cut(s)	309, 503
FaeI	CATG	2 cut(s)	172, 971
FatI	CATG	2 cut(s)	168, 967
FauI	CCCGC	4 cut(s)	146, 423, 456, 1116
FauNDI	CATATG	1 cut(s)	396
FokI	GGATG	3 cut(s)	89, 739, 998
FriOI	GRGCYC	2 cut(s)	309, 503
FspBI	CTAG	1 cut(s)	1140
GlaI	GCGC	7 cut(s)	119, 133, 154, 230, 378, 388, 957
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	4 cut(s)	137, 162, 245, 256
HapII	CCGG	2 cut(s)	193, 253
HgaI	GACGC	2 cut(s)	47, 400
HhaI	GCGC	7 cut(s)	120, 134, 155, 231, 379, 389, 958
Hin1I	GRCGYC	3 cut(s)	39, 411, 720
Hin1II	CATG	2 cut(s)	172, 971
Hin6I	GCGC	7 cut(s)	118, 132, 153, 229, 377, 387, 956
HinP1I	GCGC	7 cut(s)	118, 132, 153, 229, 377, 387, 956
HinfI	GANTC	6 cut(s)	203, 484, 590, 625, 674, 917
HpaII	CCGG	2 cut(s)	193, 253
HphI	GGTGA	3 cut(s)	655, 668, 917
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	37, 354, 886, 1131
Hpy188III	TCNNGA	5 cut(s)	179, 200, 298, 814, 824
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	4 cut(s)	41, 52, 416, 725
HpyAV	CCTTC	4 cut(s)	36, 195, 473, 821
HpyCH4IV	ACGT	1 cut(s)	720
HpyF3I	CTNAG	5 cut(s)	59, 342, 353, 489, 837
HpySE526I	ACGT	1 cut(s)	720
Hsp92I	GRCGYC	3 cut(s)	39, 411, 720
Hsp92II	CATG	2 cut(s)	172, 971
HspAI	GCGC	7 cut(s)	118, 132, 153, 229, 377, 387, 956
KspI	CCGCGG	2 cut(s)	130, 210
Kzo9I	GATC	5 cut(s)	693, 820, 846, 850, 1092
LguI	GCTCTTC	1 cut(s)	508
LmnI	GCTCC	4 cut(s)	214, 226, 544, 830
Lsp1109I	GCAGC	5 cut(s)	102, 229, 279, 366, 983
LweI	GCATC	5 cut(s)	761, 801, 943, 976, 1008
MaeI	CTAG	1 cut(s)	1140
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	4 cut(s)	643, 814, 944, 1086
MalI	GATC	5 cut(s)	695, 822, 848, 852, 1094
MbiI	CCGCTC	1 cut(s)	1111
MboI	GATC	5 cut(s)	693, 820, 846, 850, 1092
MboII	GAAGA	3 cut(s)	495, 542, 854
MhlI	GDGCHC	3 cut(s)	309, 422, 503
MluCI	AATT	2 cut(s)	583, 683
MlyI	GAGTC	5 cut(s)	212, 493, 599, 668, 911
MmeI	TCCRAC	1 cut(s)	60
MseI	TTAA	1 cut(s)	900
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	5 cut(s)	129, 159, 209, 220, 962
MspI	CCGG	2 cut(s)	193, 253
MspR9I	CCNGG	2 cut(s)	194, 253
Mva1269I	GAATGC	1 cut(s)	998
MvnI	CGCG	9 cut(s)	118, 129, 134, 153, 201, 209, 377, 389, 424
NciI	CCSGG	2 cut(s)	194, 253
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	5 cut(s)	693, 820, 846, 850, 1092
NheI	GCTAGC	1 cut(s)	1139
NlaIII	CATG	2 cut(s)	172, 971
NlaIV	GGNNCC	2 cut(s)	348, 1027
NmuCI	GTSAC	3 cut(s)	643, 814, 944
NotI	GCGGCCGC	1 cut(s)	160
NruI	TCGCGA	1 cut(s)	201
NspI	RCATGY	1 cut(s)	971
PaqCI	CACCTGC	2 cut(s)	1079, 1112
PciSI	GCTCTTC	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	1 cut(s)	608
PctI	GAATGC	1 cut(s)	998
PfeI	GAWTC	1 cut(s)	625
PleI	GAGTC	5 cut(s)	211, 492, 598, 668, 911
PpsI	GAGTC	5 cut(s)	211, 492, 598, 668, 911
Psp124BI	GAGCTC	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	348, 1027
PspPI	GGNCC	4 cut(s)	136, 243, 255, 271
PstI	CTGCAG	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	220
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	1 cut(s)	866
RsaNI	GTAC	1 cut(s)	865
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	503
SacII	CCGCGG	2 cut(s)	130, 210
SapI	GCTCTTC	1 cut(s)	508
SaqAI	TTAA	1 cut(s)	900
Sau3AI	GATC	5 cut(s)	693, 820, 846, 850, 1092
Sau96I	GGNCC	4 cut(s)	136, 243, 255, 271
SchI	GAGTC	5 cut(s)	212, 493, 599, 668, 911
ScrFI	CCNGG	2 cut(s)	194, 253
SduI	GDGCHC	3 cut(s)	309, 422, 503
SfaNI	GCATC	5 cut(s)	761, 801, 943, 976, 1008
SfcI	CTRYAG	1 cut(s)	380
Sfr303I	CCGCGG	2 cut(s)	130, 210
SgrBI	CCGCGG	2 cut(s)	130, 210
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	583, 683
SspMI	CTAG	1 cut(s)	1140
SstI	GAGCTC	1 cut(s)	503
StyD4I	CCNGG	2 cut(s)	192, 251
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	3 cut(s)	178, 414, 849
TaqII	GACCGA	2 cut(s)	686, 953
TasI	AATT	2 cut(s)	583, 683
TatI	WGTACW	1 cut(s)	864
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	1 cut(s)	900
Tru9I	TTAA	1 cut(s)	900
TscAI	CASTG	5 cut(s)	389, 497, 955, 1070, 1159
TseFI	GTSAC	3 cut(s)	643, 814, 944
TseI	GCWGC	5 cut(s)	90, 217, 292, 379, 996
Tsp45I	GTSAC	3 cut(s)	643, 814, 944
TspRI	CASTG	5 cut(s)	389, 497, 955, 1070, 1159
VneI	GTGCAC	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	583
XceI	RCATGY	1 cut(s)	971
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 920
XspI	CTAG	1 cut(s)	1140
ZraI	GACGTC	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.