MD01G1049700.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
15245005 .. 15254316
9312 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1049700.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGAATTCTGTAGACACTCACCCACTCATCGGCTACTCATTCGGCGACGAGCTCTTCCAAAACCGGCGGCTCATGCGCCACGGCCCGCCACCGTTGCGGGGCGCGATGCGAATCCTTTCGCGCGTAAGCGGGCGCCGAATGAGGCTGCGCGAGCCGTCGGTTCGGGTCCGGGAGAACGCGGTGGAGGAGCTGGAAGAGCGTCAGAACTTCTGGGCTTACTCGAAGCCCGCCATAATTCTGGACCTGCTGTGGAATTTGGTTTTCGTGATTGTTGGGTTCACTGTGCTGGGGCTGAGCGTGGAGGAGAAGCCATTGGTGCCTATAAGGGTTTGGGTTGTTGGGTACATTTTGCTGTGTGTTGTTCATGTTGGGTGTGTGGTTGCGCAGTATCGGAGGAGGCGCGAGGAGGGCGAGGCGGGTTCGGGTGAAGTGGGTTGGGGGAGTATTGGGAGTGAGAGTTCGGGGTCAGGGGGTAATGTTGGGGGTTATGGGGGTGAGCATGGTTTGGTTGATGATGATACAAGTGTCACCACGAGTCTGGAGTCAGCCATTAGCATGTTTTCATTTATATGGTGGAGCATTGGCTTTTACTGGGTGCTTAATGGCGGCCAGACTTTGCTATCCAGTTCACCTCGCCTTTACTGGCTATGTGTTTCATTTCTAGTTTTTGATGTCACCTTCATCATTGTATATGTTGCTGCTTCATGTCTTGTTGGAATTGCAATCTGCTGCTTCCTTCCATGCATAATTGGAATCTTATGTGCTGTGACAGATCAGGATGGGGCAACAGAAGAAGAGATTGATGGATTGCCAAAGTTCAAATTCAGAAGGGTAGGTGACTCAGAGAAAGTTAATGGTGAGGTCCAAGCTTTTGAAGGATTCATGATCGAATGTGACACCAATGCACCAACTGAGCGTCCTATTTCCCTGGTTGATGCTGAATGCTGCATCTGCCTTTCTGTCTACGAGAATGGAGCAGAACTACGCGAGCTTCCTTGCCTTCATCACTTTCACTGCACTTGCATAGACAAATGGTTATATATCAATGCTACCTGCCCCATGTGTAAGTTCAACATTTTGAAGCCTCATGACCGACGTGAAATCGGGCAAGTGTAA

Protein Analysis

372

Amino Acids

41.41

Weight (kDa)

5.3

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 314 - 356 1.2e-12 Ring finger domain
zf-RING_11 PF17123 314 - 342 2.9e-07 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 384
Acc36I ACCTGC 2 cut(s) 252, 1061
AccB1I GGYRCC 2 cut(s) 132, 316
AccI GTMKAC 2 cut(s) 12, 963
AccII CGCG 7 cut(s) 104, 121, 123, 150, 179, 402, 987
AciI CCGC 8 cut(s) 67, 86, 97, 129, 179, 228, 416, 606
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 3 cut(s) 4, 253, 821
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 29, 98
AgsI TTSAA 4 cut(s) 820, 875, 1072, 1081
AjiI CACGTC 1 cut(s) 1097
AjnI CCWGG 1 cut(s) 927
AloI GAACNNNNNNTCC 2 cut(s) 442, 474
AluBI AGCT 4 cut(s) 52, 190, 869, 991
AluI AGCT 4 cut(s) 52, 190, 869, 991
Alw21I GWGCWC 1 cut(s) 54
AoxI GGCC 2 cut(s) 82, 607
ApeKI GCWGC 4 cut(s) 145, 698, 729, 945
ApoI RAATTY 3 cut(s) 4, 253, 821
Asp700I GAANNNNTTC 1 cut(s) 115
AspLEI GCGC 7 cut(s) 78, 104, 123, 135, 150, 385, 402
AspS9I GGNCC 4 cut(s) 83, 166, 241, 862
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 8 cut(s) 11, 437, 506, 520, 621, 667, 848, 869
AvaII GGWCC 3 cut(s) 166, 241, 862
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BanI GGYRCC 2 cut(s) 132, 316
BanII GRGCYC 1 cut(s) 54
BauI CACGAG 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 4 cut(s) 132, 685, 716, 932
BccI CCATC 2 cut(s) 773, 797
BceAI ACGGC 2 cut(s) 97, 139
BciT130I CCWGG 1 cut(s) 929
BcnI CCSGG 1 cut(s) 170
BfaI CTAG 1 cut(s) 662
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 136
BfuAI ACCTGC 2 cut(s) 252, 1061
BisI GCNGC 6 cut(s) 68, 146, 607, 699, 730, 946
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 6 cut(s) 69, 147, 608, 700, 731, 947
Bme1390I CCNGG 2 cut(s) 170, 929
Bme18I GGWCC 3 cut(s) 166, 241, 862
BmgBI CACGTC 1 cut(s) 1097
BmgT120I GGNCC 4 cut(s) 83, 166, 241, 862
BmiI GGNNCC 3 cut(s) 134, 167, 318
BmrFI CCNGG 2 cut(s) 170, 929
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 3 cut(s) 96, 925, 957
BmuI ACTGGG 1 cut(s) 601
BpmI CTGGAG 1 cut(s) 560
Bpu1102I GCTNAGC 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 170
BsaBI GATNNNNATC 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 79, 927
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 98
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 3 cut(s) 596, 624, 647
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 1 cut(s) 929
BseDI CCNNGG 2 cut(s) 79, 927
BseGI GGATG 1 cut(s) 784
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 29, 98
BseMII CTCAG 3 cut(s) 284, 855, 903
BseNI ACTGG 3 cut(s) 596, 624, 647
BseRI GAGGAG 4 cut(s) 200, 317, 409, 419
BseXI GCAGC 4 cut(s) 132, 685, 716, 932
BseYI CCCAGC 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 1000
Bsh1236I CGCG 7 cut(s) 104, 121, 123, 150, 179, 402, 987
BshFI GGCC 2 cut(s) 84, 609
BshNI GGYRCC 2 cut(s) 132, 316
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 64, 169
BslI CCNNNNNNNGG 2 cut(s) 29, 98
BsmI GAATGC 1 cut(s) 947
BsnI GGCC 2 cut(s) 84, 609
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 772, 885
Bsp1720I GCTNAGC 1 cut(s) 293
BspACI CCGC 8 cut(s) 67, 86, 97, 129, 179, 228, 416, 606
BspANI GGCC 2 cut(s) 84, 609
BspCNI CTCAG 3 cut(s) 285, 854, 904
BspFNI CGCG 7 cut(s) 104, 121, 123, 150, 179, 402, 987
BspHI TCATGA 2 cut(s) 882, 1087
BspLI GGNNCC 3 cut(s) 134, 167, 318
BspMI ACCTGC 2 cut(s) 252, 1061
BspQI GCTCTTC 2 cut(s) 59, 189
BspT107I GGYRCC 2 cut(s) 132, 316
BsrFI RCCGGY 1 cut(s) 63
BsrI ACTGG 3 cut(s) 596, 624, 647
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 79, 927
BssMI GATC 2 cut(s) 772, 885
BssNI GRCGYC 1 cut(s) 133
BssSI CACGAG 1 cut(s) 532
Bst2BI CACGAG 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 929
Bst4CI ACNGT 2 cut(s) 93, 283
Bst6I CTCTTC 3 cut(s) 59, 189, 789
BstACI GRCGYC 1 cut(s) 133
BstC8I GCNNGC 5 cut(s) 86, 131, 152, 228, 989
BstDEI CTNAG 3 cut(s) 293, 841, 912
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 784
BstFNI CGCG 7 cut(s) 104, 121, 123, 150, 179, 402, 987
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 7 cut(s) 78, 104, 123, 135, 150, 385, 402
BstKTI GATC 2 cut(s) 775, 888
BstMBI GATC 2 cut(s) 772, 885
BstMWI GCNNNNNNNGC 7 cut(s) 73, 94, 151, 196, 316, 408, 951
BstNI CCWGG 1 cut(s) 929
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 2 cut(s) 168, 927
BstSFI CTRYAG 1 cut(s) 9
BstUI CGCG 7 cut(s) 104, 121, 123, 150, 179, 402, 987
BstV1I GCAGC 4 cut(s) 132, 685, 716, 932
BstXI CCANNNNNNTGG 2 cut(s) 238, 538
BsuRI GGCC 2 cut(s) 84, 609
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 119
BtrI CACGTC 1 cut(s) 1097
BtsCI GGATG 1 cut(s) 784
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 2 cut(s) 279, 1012
BveI ACCTGC 2 cut(s) 252, 1061
Cac8I GCNNGC 5 cut(s) 86, 131, 152, 228, 989
CciI TCATGA 2 cut(s) 882, 1087
CfoI GCGC 7 cut(s) 78, 104, 123, 135, 150, 385, 402
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 4 cut(s) 83, 166, 241, 862
CseI GACGC 2 cut(s) 188, 905
Csp6I GTAC 1 cut(s) 343
CviAII CATG 9 cut(s) 73, 365, 500, 556, 705, 741, 883, 1060, 1088
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 3 cut(s) 293, 841, 912
DinI GGCGCC 1 cut(s) 134
DpnI GATC 2 cut(s) 774, 887
DpnII GATC 2 cut(s) 772, 885
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 3 cut(s) 59, 189, 789
EarI CTCTTC 3 cut(s) 59, 189, 789
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 3 cut(s) 166, 241, 862
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 927
EcoT22I ATGCAT 1 cut(s) 746
EcoT38I GRGCYC 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
FaeI CATG 9 cut(s) 76, 368, 503, 559, 708, 744, 886, 1063, 1091
FatI CATG 9 cut(s) 72, 364, 499, 555, 704, 740, 882, 1059, 1087
FauI CCCGC 5 cut(s) 90, 93, 122, 235, 409
FblI GTMKAC 2 cut(s) 12, 963
Fnu4HI GCNGC 6 cut(s) 68, 146, 607, 699, 730, 946
FokI GGATG 1 cut(s) 791
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 6 cut(s) 68, 146, 607, 699, 730, 946
FspBI CTAG 1 cut(s) 662
FspI TGCGCA 1 cut(s) 384
GlaI GCGC 7 cut(s) 77, 103, 122, 134, 149, 384, 401
GluI GCNGC 6 cut(s) 68, 146, 607, 699, 730, 946
GsaI CCCAGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 560
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 2 cut(s) 84, 609
HapII CCGG 2 cut(s) 64, 169
HgaI GACGC 2 cut(s) 188, 905
HhaI GCGC 7 cut(s) 78, 104, 123, 135, 150, 385, 402
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 9 cut(s) 76, 368, 503, 559, 708, 744, 886, 1063, 1091
Hin6I GCGC 7 cut(s) 76, 102, 121, 133, 148, 383, 400
HinP1I GCGC 7 cut(s) 76, 102, 121, 133, 148, 383, 400
HindIII AAGCTT 1 cut(s) 867
HinfI GANTC 6 cut(s) 111, 535, 542, 753, 839, 879
HpaII CCGG 2 cut(s) 64, 169
HphI GGTGA 8 cut(s) 11, 437, 506, 520, 621, 667, 848, 869
Hpy166II GTNNAC 4 cut(s) 13, 279, 629, 964
Hpy188I TCNGA 4 cut(s) 204, 393, 827, 844
Hpy188III TCNNGA 6 cut(s) 239, 265, 539, 776, 883, 1088
Hpy8I GTNNAC 4 cut(s) 13, 279, 629, 964
Hpy99I CGWCG 3 cut(s) 50, 160, 1098
HpyAV CCTTC 5 cut(s) 688, 746, 822, 869, 1010
HpyCH4III ACNGT 2 cut(s) 93, 283
HpyCH4IV ACGT 1 cut(s) 1096
HpyCH4V TGCA 6 cut(s) 722, 744, 905, 948, 1017, 1023
HpyF10VI GCNNNNNNNGC 7 cut(s) 73, 94, 151, 196, 316, 408, 951
HpyF3I CTNAG 3 cut(s) 293, 841, 912
HpySE526I ACGT 1 cut(s) 1096
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 9 cut(s) 76, 368, 503, 559, 708, 744, 886, 1063, 1091
HspAI GCGC 7 cut(s) 76, 102, 121, 133, 148, 383, 400
KasI GGCGCC 1 cut(s) 132
Kzo9I GATC 2 cut(s) 772, 885
LguI GCTCTTC 2 cut(s) 59, 189
LmnI GCTCC 3 cut(s) 187, 576, 974
Lsp1109I GCAGC 4 cut(s) 132, 685, 716, 932
LweI GCATC 3 cut(s) 96, 925, 957
MaeI CTAG 1 cut(s) 662
MaeII ACGT 1 cut(s) 1096
MaeIII GTNAC 5 cut(s) 526, 673, 766, 836, 893
MalI GATC 2 cut(s) 774, 887
MboI GATC 2 cut(s) 772, 885
MboII GAAGA 4 cut(s) 46, 206, 803, 806
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 6 cut(s) 4, 234, 253, 717, 747, 821
Mly113I GGCGCC 1 cut(s) 133
MlyI GAGTC 3 cut(s) 544, 551, 833
MmeI TCCRAC 1 cut(s) 694
Mph1103I ATGCAT 1 cut(s) 746
MroXI GAANNNNTTC 1 cut(s) 115
MseI TTAA 2 cut(s) 600, 852
MslI CAYNNNNRTG 2 cut(s) 554, 568
MspI CCGG 2 cut(s) 64, 169
MspR9I CCNGG 2 cut(s) 170, 929
Mva1269I GAATGC 1 cut(s) 947
MvaI CCWGG 1 cut(s) 929
MvnI CGCG 7 cut(s) 104, 121, 123, 150, 179, 402, 987
MwoI GCNNNNNNNGC 7 cut(s) 73, 94, 151, 196, 316, 408, 951
NarI GGCGCC 1 cut(s) 133
NciI CCSGG 1 cut(s) 170
NdeII GATC 2 cut(s) 772, 885
NlaIII CATG 9 cut(s) 76, 368, 503, 559, 708, 744, 886, 1063, 1091
NlaIV GGNNCC 3 cut(s) 134, 167, 318
NmuCI GTSAC 5 cut(s) 526, 673, 766, 836, 893
NsbI TGCGCA 1 cut(s) 384
NsiI ATGCAT 1 cut(s) 746
NspI RCATGY 1 cut(s) 559
PagI TCATGA 2 cut(s) 882, 1087
PciSI GCTCTTC 2 cut(s) 59, 189
PctI GAATGC 1 cut(s) 947
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 3 cut(s) 111, 753, 879
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 6 cut(s) 69, 147, 608, 700, 731, 947
PleI GAGTC 3 cut(s) 543, 550, 833
PluTI GGCGCC 1 cut(s) 136
PpsI GAGTC 3 cut(s) 543, 550, 833
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 927
PspFI CCCAGC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 927
PspN4I GGNNCC 3 cut(s) 134, 167, 318
PspPI GGNCC 4 cut(s) 83, 166, 241, 862
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 2 cut(s) 554, 568
SacI GAGCTC 1 cut(s) 54
SapI GCTCTTC 2 cut(s) 59, 189
SaqAI TTAA 2 cut(s) 600, 852
SatI GCNGC 6 cut(s) 68, 146, 607, 699, 730, 946
Sau3AI GATC 2 cut(s) 772, 885
Sau96I GGNCC 4 cut(s) 83, 166, 241, 862
SchI GAGTC 3 cut(s) 544, 551, 833
ScrFI CCNGG 2 cut(s) 170, 929
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 3 cut(s) 96, 925, 957
SfcI CTRYAG 1 cut(s) 9
SfoI GGCGCC 1 cut(s) 134
SinI GGWCC 3 cut(s) 166, 241, 862
SmiMI CAYNNNNRTG 2 cut(s) 554, 568
Sse9I AATT 6 cut(s) 4, 234, 253, 717, 747, 821
SsiI CCGC 8 cut(s) 67, 86, 97, 129, 179, 228, 416, 606
SspDI GGCGCC 1 cut(s) 132
SspMI CTAG 1 cut(s) 662
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 168, 927
TaaI ACNGT 2 cut(s) 93, 283
TaiI ACGT 1 cut(s) 1099
TaqI TCGA 2 cut(s) 221, 888
TaqII GACCGA 1 cut(s) 1107
TasI AATT 6 cut(s) 4, 234, 253, 717, 747, 821
TauI GCSGC 2 cut(s) 70, 609
TfiI GAWTC 3 cut(s) 111, 753, 879
Tru1I TTAA 2 cut(s) 600, 852
Tru9I TTAA 2 cut(s) 600, 852
TscAI CASTG 2 cut(s) 286, 1019
TseFI GTSAC 5 cut(s) 526, 673, 766, 836, 893
TseI GCWGC 4 cut(s) 145, 698, 729, 945
Tsp45I GTSAC 5 cut(s) 526, 673, 766, 836, 893
TspDTI ATGAA 8 cut(s) 17, 353, 552, 645, 670, 693, 871, 992
TspRI CASTG 2 cut(s) 286, 1019
VpaK11BI GGWCC 3 cut(s) 166, 241, 862
XapI RAATTY 3 cut(s) 4, 253, 821
XceI RCATGY 1 cut(s) 559
XmiI GTMKAC 2 cut(s) 12, 963
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 1 cut(s) 662
Zsp2I ATGCAT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.