E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G61180 |
| fragaria_vesca | FvH4_3g08230 |
| malus_domestica | MD01G1049700.v1.1 MD05G1306100.v1.1 MD07G1126700.v1.1 MD07G1126800.v1.1 MD10G1285100.v1.1 |
| prunus_persica | Prupe.2G157200_v2.0.a1 Prupe.4G056500_v2.0.a1 |
| pyrus_communis | pycom01g07470 pycom05g28320 pycom07g12230 pycom07g12310 pycom10g23820 |
| rosa_chinensis | RchiOBHm_Chr5g0009921 |
| rosa_laevigata | RLG00000031710 |
| rosa_multiflora | Rmu_sc0001709.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00066260 |
| rosa_rugosa | Rorug04G0446900 |
| rosa_samantha | Rh5AG078500 Rh5BG073400 Rh5CG085800 Rh5DG073900 |
| rosa_wichuraiana | Rw5G007220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 384 |
| Acc36I | ACCTGC | 2 cut(s) | 252, 1061 |
| AccB1I | GGYRCC | 2 cut(s) | 132, 316 |
| AccI | GTMKAC | 2 cut(s) | 12, 963 |
| AccII | CGCG | 7 cut(s) | 104, 121, 123, 150, 179, 402, 987 |
| AciI | CCGC | 8 cut(s) | 67, 86, 97, 129, 179, 228, 416, 606 |
| AcoI | YGGCCR | 1 cut(s) | 607 |
| AcsI | RAATTY | 3 cut(s) | 4, 253, 821 |
| AcyI | GRCGYC | 1 cut(s) | 133 |
| AfaI | GTAC | 1 cut(s) | 344 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 29, 98 |
| AgsI | TTSAA | 4 cut(s) | 820, 875, 1072, 1081 |
| AjiI | CACGTC | 1 cut(s) | 1097 |
| AjnI | CCWGG | 1 cut(s) | 927 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 442, 474 |
| AluBI | AGCT | 4 cut(s) | 52, 190, 869, 991 |
| AluI | AGCT | 4 cut(s) | 52, 190, 869, 991 |
| Alw21I | GWGCWC | 1 cut(s) | 54 |
| AoxI | GGCC | 2 cut(s) | 82, 607 |
| ApeKI | GCWGC | 4 cut(s) | 145, 698, 729, 945 |
| ApoI | RAATTY | 3 cut(s) | 4, 253, 821 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 115 |
| AspLEI | GCGC | 7 cut(s) | 78, 104, 123, 135, 150, 385, 402 |
| AspS9I | GGNCC | 4 cut(s) | 83, 166, 241, 862 |
| AsuC2I | CCSGG | 1 cut(s) | 170 |
| AsuHPI | GGTGA | 8 cut(s) | 11, 437, 506, 520, 621, 667, 848, 869 |
| AvaII | GGWCC | 3 cut(s) | 166, 241, 862 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 510, 543 |
| BanI | GGYRCC | 2 cut(s) | 132, 316 |
| BanII | GRGCYC | 1 cut(s) | 54 |
| BauI | CACGAG | 1 cut(s) | 532 |
| Bbv12I | GWGCWC | 1 cut(s) | 54 |
| BbvI | GCAGC | 4 cut(s) | 132, 685, 716, 932 |
| BccI | CCATC | 2 cut(s) | 773, 797 |
| BceAI | ACGGC | 2 cut(s) | 97, 139 |
| BciT130I | CCWGG | 1 cut(s) | 929 |
| BcnI | CCSGG | 1 cut(s) | 170 |
| BfaI | CTAG | 1 cut(s) | 662 |
| BfmI | CTRYAG | 1 cut(s) | 9 |
| BfoI | RGCGCY | 1 cut(s) | 136 |
| BfuAI | ACCTGC | 2 cut(s) | 252, 1061 |
| BisI | GCNGC | 6 cut(s) | 68, 146, 607, 699, 730, 946 |
| BlpI | GCTNAGC | 1 cut(s) | 293 |
| BlsI | GCNGC | 6 cut(s) | 69, 147, 608, 700, 731, 947 |
| Bme1390I | CCNGG | 2 cut(s) | 170, 929 |
| Bme18I | GGWCC | 3 cut(s) | 166, 241, 862 |
| BmgBI | CACGTC | 1 cut(s) | 1097 |
| BmgT120I | GGNCC | 4 cut(s) | 83, 166, 241, 862 |
| BmiI | GGNNCC | 3 cut(s) | 134, 167, 318 |
| BmrFI | CCNGG | 2 cut(s) | 170, 929 |
| BmrI | ACTGGG | 1 cut(s) | 601 |
| BmsI | GCATC | 3 cut(s) | 96, 925, 957 |
| BmuI | ACTGGG | 1 cut(s) | 601 |
| BpmI | CTGGAG | 1 cut(s) | 560 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 293 |
| BpuMI | CCSGG | 1 cut(s) | 170 |
| BsaBI | GATNNNNATC | 1 cut(s) | 110 |
| BsaHI | GRCGYC | 1 cut(s) | 133 |
| BsaJI | CCNNGG | 2 cut(s) | 79, 927 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 442, 472 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 29, 98 |
| Bse118I | RCCGGY | 1 cut(s) | 63 |
| Bse1I | ACTGG | 3 cut(s) | 596, 624, 647 |
| Bse8I | GATNNNNATC | 1 cut(s) | 110 |
| BseBI | CCWGG | 1 cut(s) | 929 |
| BseDI | CCNNGG | 2 cut(s) | 79, 927 |
| BseGI | GGATG | 1 cut(s) | 784 |
| BseJI | GATNNNNATC | 1 cut(s) | 110 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 29, 98 |
| BseMII | CTCAG | 3 cut(s) | 284, 855, 903 |
| BseNI | ACTGG | 3 cut(s) | 596, 624, 647 |
| BseRI | GAGGAG | 4 cut(s) | 200, 317, 409, 419 |
| BseXI | GCAGC | 4 cut(s) | 132, 685, 716, 932 |
| BseYI | CCCAGC | 1 cut(s) | 286 |
| BsgI | GTGCAG | 1 cut(s) | 1000 |
| Bsh1236I | CGCG | 7 cut(s) | 104, 121, 123, 150, 179, 402, 987 |
| BshFI | GGCC | 2 cut(s) | 84, 609 |
| BshNI | GGYRCC | 2 cut(s) | 132, 316 |
| BsiHKAI | GWGCWC | 1 cut(s) | 54 |
| BsiSI | CCGG | 2 cut(s) | 64, 169 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 29, 98 |
| BsmI | GAATGC | 1 cut(s) | 947 |
| BsnI | GGCC | 2 cut(s) | 84, 609 |
| Bsp1286I | GDGCHC | 1 cut(s) | 54 |
| Bsp143I | GATC | 2 cut(s) | 772, 885 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 293 |
| BspACI | CCGC | 8 cut(s) | 67, 86, 97, 129, 179, 228, 416, 606 |
| BspANI | GGCC | 2 cut(s) | 84, 609 |
| BspCNI | CTCAG | 3 cut(s) | 285, 854, 904 |
| BspFNI | CGCG | 7 cut(s) | 104, 121, 123, 150, 179, 402, 987 |
| BspHI | TCATGA | 2 cut(s) | 882, 1087 |
| BspLI | GGNNCC | 3 cut(s) | 134, 167, 318 |
| BspMI | ACCTGC | 2 cut(s) | 252, 1061 |
| BspQI | GCTCTTC | 2 cut(s) | 59, 189 |
| BspT107I | GGYRCC | 2 cut(s) | 132, 316 |
| BsrFI | RCCGGY | 1 cut(s) | 63 |
| BsrI | ACTGG | 3 cut(s) | 596, 624, 647 |
| BssAI | RCCGGY | 1 cut(s) | 63 |
| BssECI | CCNNGG | 2 cut(s) | 79, 927 |
| BssMI | GATC | 2 cut(s) | 772, 885 |
| BssNI | GRCGYC | 1 cut(s) | 133 |
| BssSI | CACGAG | 1 cut(s) | 532 |
| Bst2BI | CACGAG | 1 cut(s) | 532 |
| Bst2UI | CCWGG | 1 cut(s) | 929 |
| Bst4CI | ACNGT | 2 cut(s) | 93, 283 |
| Bst6I | CTCTTC | 3 cut(s) | 59, 189, 789 |
| BstACI | GRCGYC | 1 cut(s) | 133 |
| BstC8I | GCNNGC | 5 cut(s) | 86, 131, 152, 228, 989 |
| BstDEI | CTNAG | 3 cut(s) | 293, 841, 912 |
| BstDSI | CCRYGG | 1 cut(s) | 79 |
| BstF5I | GGATG | 1 cut(s) | 784 |
| BstFNI | CGCG | 7 cut(s) | 104, 121, 123, 150, 179, 402, 987 |
| BstH2I | RGCGCY | 1 cut(s) | 136 |
| BstHHI | GCGC | 7 cut(s) | 78, 104, 123, 135, 150, 385, 402 |
| BstKTI | GATC | 2 cut(s) | 775, 888 |
| BstMBI | GATC | 2 cut(s) | 772, 885 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 73, 94, 151, 196, 316, 408, 951 |
| BstNI | CCWGG | 1 cut(s) | 929 |
| BstNSI | RCATGY | 1 cut(s) | 559 |
| BstSCI | CCNGG | 2 cut(s) | 168, 927 |
| BstSFI | CTRYAG | 1 cut(s) | 9 |
| BstUI | CGCG | 7 cut(s) | 104, 121, 123, 150, 179, 402, 987 |
| BstV1I | GCAGC | 4 cut(s) | 132, 685, 716, 932 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 238, 538 |
| BsuRI | GGCC | 2 cut(s) | 84, 609 |
| BtgI | CCRYGG | 1 cut(s) | 79 |
| BtgZI | GCGATG | 1 cut(s) | 119 |
| BtrI | CACGTC | 1 cut(s) | 1097 |
| BtsCI | GGATG | 1 cut(s) | 784 |
| BtsI | GCAGTG | 1 cut(s) | 1012 |
| BtsIMutI | CAGTG | 2 cut(s) | 279, 1012 |
| BveI | ACCTGC | 2 cut(s) | 252, 1061 |
| Cac8I | GCNNGC | 5 cut(s) | 86, 131, 152, 228, 989 |
| CciI | TCATGA | 2 cut(s) | 882, 1087 |
| CfoI | GCGC | 7 cut(s) | 78, 104, 123, 135, 150, 385, 402 |
| Cfr10I | RCCGGY | 1 cut(s) | 63 |
| Cfr13I | GGNCC | 4 cut(s) | 83, 166, 241, 862 |
| CseI | GACGC | 2 cut(s) | 188, 905 |
| Csp6I | GTAC | 1 cut(s) | 343 |
| CviAII | CATG | 9 cut(s) | 73, 365, 500, 556, 705, 741, 883, 1060, 1088 |
| CviQI | GTAC | 1 cut(s) | 343 |
| DdeI | CTNAG | 3 cut(s) | 293, 841, 912 |
| DinI | GGCGCC | 1 cut(s) | 134 |
| DpnI | GATC | 2 cut(s) | 774, 887 |
| DpnII | GATC | 2 cut(s) | 772, 885 |
| EaeI | YGGCCR | 1 cut(s) | 607 |
| Eam1104I | CTCTTC | 3 cut(s) | 59, 189, 789 |
| EarI | CTCTTC | 3 cut(s) | 59, 189, 789 |
| Ecl136II | GAGCTC | 1 cut(s) | 52 |
| Eco24I | GRGCYC | 1 cut(s) | 54 |
| Eco47I | GGWCC | 3 cut(s) | 166, 241, 862 |
| Eco53kI | GAGCTC | 1 cut(s) | 52 |
| EcoICRI | GAGCTC | 1 cut(s) | 52 |
| EcoRI | GAATTC | 1 cut(s) | 4 |
| EcoRII | CCWGG | 1 cut(s) | 927 |
| EcoT22I | ATGCAT | 1 cut(s) | 746 |
| EcoT38I | GRGCYC | 1 cut(s) | 54 |
| EgeI | GGCGCC | 1 cut(s) | 134 |
| EheI | GGCGCC | 1 cut(s) | 134 |
| FaeI | CATG | 9 cut(s) | 76, 368, 503, 559, 708, 744, 886, 1063, 1091 |
| FatI | CATG | 9 cut(s) | 72, 364, 499, 555, 704, 740, 882, 1059, 1087 |
| FauI | CCCGC | 5 cut(s) | 90, 93, 122, 235, 409 |
| FblI | GTMKAC | 2 cut(s) | 12, 963 |
| Fnu4HI | GCNGC | 6 cut(s) | 68, 146, 607, 699, 730, 946 |
| FokI | GGATG | 1 cut(s) | 791 |
| FriOI | GRGCYC | 1 cut(s) | 54 |
| Fsp4HI | GCNGC | 6 cut(s) | 68, 146, 607, 699, 730, 946 |
| FspBI | CTAG | 1 cut(s) | 662 |
| FspI | TGCGCA | 1 cut(s) | 384 |
| GlaI | GCGC | 7 cut(s) | 77, 103, 122, 134, 149, 384, 401 |
| GluI | GCNGC | 6 cut(s) | 68, 146, 607, 699, 730, 946 |
| GsaI | CCCAGC | 1 cut(s) | 290 |
| GsuI | CTGGAG | 1 cut(s) | 560 |
| HaeII | RGCGCY | 1 cut(s) | 136 |
| HaeIII | GGCC | 2 cut(s) | 84, 609 |
| HapII | CCGG | 2 cut(s) | 64, 169 |
| HgaI | GACGC | 2 cut(s) | 188, 905 |
| HhaI | GCGC | 7 cut(s) | 78, 104, 123, 135, 150, 385, 402 |
| Hin1I | GRCGYC | 1 cut(s) | 133 |
| Hin1II | CATG | 9 cut(s) | 76, 368, 503, 559, 708, 744, 886, 1063, 1091 |
| Hin6I | GCGC | 7 cut(s) | 76, 102, 121, 133, 148, 383, 400 |
| HinP1I | GCGC | 7 cut(s) | 76, 102, 121, 133, 148, 383, 400 |
| HindIII | AAGCTT | 1 cut(s) | 867 |
| HinfI | GANTC | 6 cut(s) | 111, 535, 542, 753, 839, 879 |
| HpaII | CCGG | 2 cut(s) | 64, 169 |
| HphI | GGTGA | 8 cut(s) | 11, 437, 506, 520, 621, 667, 848, 869 |
| Hpy166II | GTNNAC | 4 cut(s) | 13, 279, 629, 964 |
| Hpy188I | TCNGA | 4 cut(s) | 204, 393, 827, 844 |
| Hpy188III | TCNNGA | 6 cut(s) | 239, 265, 539, 776, 883, 1088 |
| Hpy8I | GTNNAC | 4 cut(s) | 13, 279, 629, 964 |
| Hpy99I | CGWCG | 3 cut(s) | 50, 160, 1098 |
| HpyAV | CCTTC | 5 cut(s) | 688, 746, 822, 869, 1010 |
| HpyCH4III | ACNGT | 2 cut(s) | 93, 283 |
| HpyCH4IV | ACGT | 1 cut(s) | 1096 |
| HpyCH4V | TGCA | 6 cut(s) | 722, 744, 905, 948, 1017, 1023 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 73, 94, 151, 196, 316, 408, 951 |
| HpyF3I | CTNAG | 3 cut(s) | 293, 841, 912 |
| HpySE526I | ACGT | 1 cut(s) | 1096 |
| Hsp92I | GRCGYC | 1 cut(s) | 133 |
| Hsp92II | CATG | 9 cut(s) | 76, 368, 503, 559, 708, 744, 886, 1063, 1091 |
| HspAI | GCGC | 7 cut(s) | 76, 102, 121, 133, 148, 383, 400 |
| KasI | GGCGCC | 1 cut(s) | 132 |
| Kzo9I | GATC | 2 cut(s) | 772, 885 |
| LguI | GCTCTTC | 2 cut(s) | 59, 189 |
| LmnI | GCTCC | 3 cut(s) | 187, 576, 974 |
| Lsp1109I | GCAGC | 4 cut(s) | 132, 685, 716, 932 |
| LweI | GCATC | 3 cut(s) | 96, 925, 957 |
| MaeI | CTAG | 1 cut(s) | 662 |
| MaeII | ACGT | 1 cut(s) | 1096 |
| MaeIII | GTNAC | 5 cut(s) | 526, 673, 766, 836, 893 |
| MalI | GATC | 2 cut(s) | 774, 887 |
| MboI | GATC | 2 cut(s) | 772, 885 |
| MboII | GAAGA | 4 cut(s) | 46, 206, 803, 806 |
| MhlI | GDGCHC | 1 cut(s) | 54 |
| MluCI | AATT | 6 cut(s) | 4, 234, 253, 717, 747, 821 |
| Mly113I | GGCGCC | 1 cut(s) | 133 |
| MlyI | GAGTC | 3 cut(s) | 544, 551, 833 |
| MmeI | TCCRAC | 1 cut(s) | 694 |
| Mph1103I | ATGCAT | 1 cut(s) | 746 |
| MroXI | GAANNNNTTC | 1 cut(s) | 115 |
| MseI | TTAA | 2 cut(s) | 600, 852 |
| MslI | CAYNNNNRTG | 2 cut(s) | 554, 568 |
| MspI | CCGG | 2 cut(s) | 64, 169 |
| MspR9I | CCNGG | 2 cut(s) | 170, 929 |
| Mva1269I | GAATGC | 1 cut(s) | 947 |
| MvaI | CCWGG | 1 cut(s) | 929 |
| MvnI | CGCG | 7 cut(s) | 104, 121, 123, 150, 179, 402, 987 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 73, 94, 151, 196, 316, 408, 951 |
| NarI | GGCGCC | 1 cut(s) | 133 |
| NciI | CCSGG | 1 cut(s) | 170 |
| NdeII | GATC | 2 cut(s) | 772, 885 |
| NlaIII | CATG | 9 cut(s) | 76, 368, 503, 559, 708, 744, 886, 1063, 1091 |
| NlaIV | GGNNCC | 3 cut(s) | 134, 167, 318 |
| NmuCI | GTSAC | 5 cut(s) | 526, 673, 766, 836, 893 |
| NsbI | TGCGCA | 1 cut(s) | 384 |
| NsiI | ATGCAT | 1 cut(s) | 746 |
| NspI | RCATGY | 1 cut(s) | 559 |
| PagI | TCATGA | 2 cut(s) | 882, 1087 |
| PciSI | GCTCTTC | 2 cut(s) | 59, 189 |
| PctI | GAATGC | 1 cut(s) | 947 |
| PdmI | GAANNNNTTC | 1 cut(s) | 115 |
| PfeI | GAWTC | 3 cut(s) | 111, 753, 879 |
| PfoI | TCCNGGA | 1 cut(s) | 168 |
| PkrI | GCNGC | 6 cut(s) | 69, 147, 608, 700, 731, 947 |
| PleI | GAGTC | 3 cut(s) | 543, 550, 833 |
| PluTI | GGCGCC | 1 cut(s) | 136 |
| PpsI | GAGTC | 3 cut(s) | 543, 550, 833 |
| Psp124BI | GAGCTC | 1 cut(s) | 54 |
| Psp6I | CCWGG | 1 cut(s) | 927 |
| PspFI | CCCAGC | 1 cut(s) | 286 |
| PspGI | CCWGG | 1 cut(s) | 927 |
| PspN4I | GGNNCC | 3 cut(s) | 134, 167, 318 |
| PspPI | GGNCC | 4 cut(s) | 83, 166, 241, 862 |
| RsaI | GTAC | 1 cut(s) | 344 |
| RsaNI | GTAC | 1 cut(s) | 343 |
| RseI | CAYNNNNRTG | 2 cut(s) | 554, 568 |
| SacI | GAGCTC | 1 cut(s) | 54 |
| SapI | GCTCTTC | 2 cut(s) | 59, 189 |
| SaqAI | TTAA | 2 cut(s) | 600, 852 |
| SatI | GCNGC | 6 cut(s) | 68, 146, 607, 699, 730, 946 |
| Sau3AI | GATC | 2 cut(s) | 772, 885 |
| Sau96I | GGNCC | 4 cut(s) | 83, 166, 241, 862 |
| SchI | GAGTC | 3 cut(s) | 544, 551, 833 |
| ScrFI | CCNGG | 2 cut(s) | 170, 929 |
| SduI | GDGCHC | 1 cut(s) | 54 |
| SfaNI | GCATC | 3 cut(s) | 96, 925, 957 |
| SfcI | CTRYAG | 1 cut(s) | 9 |
| SfoI | GGCGCC | 1 cut(s) | 134 |
| SinI | GGWCC | 3 cut(s) | 166, 241, 862 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 554, 568 |
| Sse9I | AATT | 6 cut(s) | 4, 234, 253, 717, 747, 821 |
| SsiI | CCGC | 8 cut(s) | 67, 86, 97, 129, 179, 228, 416, 606 |
| SspDI | GGCGCC | 1 cut(s) | 132 |
| SspMI | CTAG | 1 cut(s) | 662 |
| SstI | GAGCTC | 1 cut(s) | 54 |
| StyD4I | CCNGG | 2 cut(s) | 168, 927 |
| TaaI | ACNGT | 2 cut(s) | 93, 283 |
| TaiI | ACGT | 1 cut(s) | 1099 |
| TaqI | TCGA | 2 cut(s) | 221, 888 |
| TaqII | GACCGA | 1 cut(s) | 1107 |
| TasI | AATT | 6 cut(s) | 4, 234, 253, 717, 747, 821 |
| TauI | GCSGC | 2 cut(s) | 70, 609 |
| TfiI | GAWTC | 3 cut(s) | 111, 753, 879 |
| Tru1I | TTAA | 2 cut(s) | 600, 852 |
| Tru9I | TTAA | 2 cut(s) | 600, 852 |
| TscAI | CASTG | 2 cut(s) | 286, 1019 |
| TseFI | GTSAC | 5 cut(s) | 526, 673, 766, 836, 893 |
| TseI | GCWGC | 4 cut(s) | 145, 698, 729, 945 |
| Tsp45I | GTSAC | 5 cut(s) | 526, 673, 766, 836, 893 |
| TspDTI | ATGAA | 8 cut(s) | 17, 353, 552, 645, 670, 693, 871, 992 |
| TspRI | CASTG | 2 cut(s) | 286, 1019 |
| VpaK11BI | GGWCC | 3 cut(s) | 166, 241, 862 |
| XapI | RAATTY | 3 cut(s) | 4, 253, 821 |
| XceI | RCATGY | 1 cut(s) | 559 |
| XmiI | GTMKAC | 2 cut(s) | 12, 963 |
| XmnI | GAANNNNTTC | 1 cut(s) | 115 |
| XspI | CTAG | 1 cut(s) | 662 |
| Zsp2I | ATGCAT | 1 cut(s) | 746 |