Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008040

Physical Location & Seq

Genomic Coordinates Reverse (-)

37508971 .. 37511819

Gene Structure 2849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1285100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTTGAGCTCAAACCAGTACCAACCCTCTGCCTCCGACGCCTCGTCGCCGCTTTTAGGCCACTCCCTCGCCGACAACATCGTCCGGAGCCGGAGACTCATACGTCGGCCGCCGCATCCTCTCCGTGGCGCAGCTCGGTTCTTGCGACGCGCGAGCAGCCGCCGGATGATGCTGCGAGAGCCGTCGGTTAGAGTCCGTGAGGCCGCGGCGGAGCAGGTGGAGGATCGCCAGAGCGACTGGGCCTACTCCCGGCCGATTATCGTTTTGGACCTATTGTGGAACGCTGGGCTCCTGGGAATTGCCGTCGGGGTGCTGTCGCTGAGCTGGAAAGAGGAGCCTTCCGTCCCTTTGAGGACTTGGATTGGCGGTTACGCGTTTCAGTGCCTGGTGCATATGGTCTGCGTGGTCGTGGAGTGCAAGCGGAGGAGGCGCGGAGGTCAAGCGGCTGCGGGGGCGGAAGCGAGTTCTGCGTGGGAAAGTTCATCTGGGTCTGGGAGTGATGATGCTGAGGACTATGGAGTTGAGCAGAGCACAGATTACACTGCCACCAGTGTTGCAAAGAATTTGGAGTCTGCGAATACGGTATTTTCGTTTATCTGGTGGATTCTTGGGTTCTACTGGGTGACTGCTGGCGGTGAAAATTTGACACAGGAATCTCCCCAGTTATACTGGATATGTATCACTTTTCTTGCTTTGGATGTTGTTTTCGTAGTCATCTGCGTTGTTCTTGCTTCTCTCGTTGGTATTGCCGTTTGCTTCTGTCTCCCCTGCATCATTGCCATCTTGTATGTTGTGACAGATCAGGAAGGAGCAACAAAGGAAGAGATCGATCGTTTGCCAAAGTACAAGTTCCGCAAGATACCTGATTTTGACAAAGTTAGTGGTGAGATCCAAGAATCTTTTGGAGGAGTAATGACTGAATGCGACACTACTACACCTACCGAACATGTTCTCTCCCCAGAGGATGCTGAATGTTGCATCTGCCTTTGTGCCTACGAAGATGGAACTGAACTACGTGAACTTCCTTGCTGTCACCACTTTCACTGCACCTGCATAGACAAATGGTTACAGATCAATGCCACCTGCCCACTCTGCAAGTACAACATTTTGAAGTCCGTTAGCCAAAGCAGTAGCGAAGAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

382

Amino Acids

42.28

Weight (kDa)

5.23

Isoelectric Point (pI)

64.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	324 - 366	7.2e-13	Ring finger domain
zf-RING_11	PF17123	324 - 352	2e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61180
fragaria_vesca	FvH4_3g08230
malus_domestica	MD01G1049700.v1.1 MD05G1306100.v1.1 MD07G1126700.v1.1 MD07G1126800.v1.1 MD10G1285100.v1.1
prunus_persica	Prupe.2G157200_v2.0.a1 Prupe.4G056500_v2.0.a1
pyrus_communis	pycom01g07470 pycom05g28320 pycom07g12230 pycom07g12310 pycom10g23820
rosa_chinensis	RchiOBHm_Chr5g0009921
rosa_laevigata	RLG00000031710
rosa_multiflora	Rmu_sc0001709.1_g000014
rosa_roxburghii	Rroxscaffold_1G00066260
rosa_rugosa	Rorug04G0446900
rosa_samantha	Rh5AG078500 Rh5BG073400 Rh5CG085800 Rh5DG073900
rosa_wichuraiana	Rw5G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	205, 1058, 1091
AasI	GACNNNNNNGTC	2 cut(s)	80, 102
Acc36I	ACCTGC	3 cut(s)	205, 1058, 1091
AccII	CGCG	5 cut(s)	150, 152, 206, 374, 432
AccIII	TCCGGA	1 cut(s)	84
AclWI	GGATC	2 cut(s)	231, 883
AcoI	YGGCCR	2 cut(s)	107, 251
AcsI	RAATTY	2 cut(s)	562, 640
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	3 cut(s)	20, 845, 1100
AfiI	CCNNNNNNNGG	3 cut(s)	56, 125, 249
AflIII	ACRYGT	2 cut(s)	372, 946
AgsI	TTSAA	1 cut(s)	1111
AhdI	GACNNNNNGTC	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	291, 384
AluBI	AGCT	3 cut(s)	9, 134, 324
AluI	AGCT	3 cut(s)	9, 134, 324
Alw21I	GWGCWC	2 cut(s)	11, 533
Alw26I	GTCTC	2 cut(s)	88, 767
AlwI	GGATC	2 cut(s)	231, 883
AlwNI	CAGNNNCTG	1 cut(s)	385
Aor13HI	TCCGGA	1 cut(s)	84
AoxI	GGCC	5 cut(s)	58, 107, 201, 240, 251
ApeKI	GCWGC	4 cut(s)	131, 156, 172, 446
ApoI	RAATTY	2 cut(s)	562, 640
Asp700I	GAANNNNTTC	1 cut(s)	948
AspLEI	GCGC	3 cut(s)	131, 152, 432
AspS9I	GGNCC	2 cut(s)	240, 268
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	4 cut(s)	634, 647, 896, 1025
AvaII	GGWCC	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	11, 291
Bbv12I	GWGCWC	2 cut(s)	11, 533
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	4 cut(s)	143, 159, 168, 433
BccI	CCATC	2 cut(s)	788, 995
BceAI	ACGGC	3 cut(s)	166, 287, 734
BciT130I	CCWGG	2 cut(s)	293, 386
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	88, 767
BfuAI	ACCTGC	3 cut(s)	205, 1058, 1091
BlpI	GCTNAGC	1 cut(s)	320
Bme1390I	CCNGG	3 cut(s)	250, 293, 386
Bme18I	GGWCC	1 cut(s)	268
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	240, 268
BmiI	GGNNCC	3 cut(s)	89, 290, 336
BmrFI	CCNGG	3 cut(s)	250, 293, 386
BmrI	ACTGGG	3 cut(s)	247, 628, 655
BmsI	GCATC	6 cut(s)	124, 159, 493, 780, 955, 987
BmuI	ACTGGG	3 cut(s)	247, 628, 655
Bpu10I	CCTNAGC	1 cut(s)	507
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	828
BsaAI	YACGTR	1 cut(s)	1016
BsaBI	GATNNNNATC	1 cut(s)	677
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	124, 204, 292
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 125, 249
Bse1I	ACTGG	6 cut(s)	16, 242, 549, 623, 661, 674
Bse3DI	GCAATG	1 cut(s)	774
Bse8I	GATNNNNATC	1 cut(s)	677
BseAI	TCCGGA	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	293, 386
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	124, 204, 292
BseGI	GGATG	4 cut(s)	115, 171, 703, 970
BseJI	GATNNNNATC	1 cut(s)	677
BseLI	CCNNNNNNNGG	3 cut(s)	56, 125, 249
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	2 cut(s)	311, 498
BseNI	ACTGG	6 cut(s)	16, 242, 549, 623, 661, 674
BseRI	GAGGAG	3 cut(s)	347, 439, 921
BseX3I	CGGCCG	2 cut(s)	107, 251
BseXI	GCAGC	4 cut(s)	143, 159, 168, 433
BseYI	CCCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	1030
Bsh1236I	CGCG	5 cut(s)	150, 152, 206, 374, 432
Bsh1285I	CGRYCG	3 cut(s)	110, 254, 832
BshFI	GGCC	5 cut(s)	60, 109, 203, 242, 253
BshVI	ATCGAT	1 cut(s)	828
BsiEI	CGRYCG	3 cut(s)	110, 254, 832
BsiHKAI	GWGCWC	2 cut(s)	11, 533
BsiSI	CCGG	4 cut(s)	85, 91, 163, 250
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	56, 125, 249
BsmAI	GTCTC	2 cut(s)	88, 767
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	5 cut(s)	60, 109, 203, 242, 253
Bsp1286I	GDGCHC	3 cut(s)	11, 291, 533
Bsp13I	TCCGGA	1 cut(s)	84
Bsp143I	GATC	6 cut(s)	223, 799, 825, 829, 888, 1071
Bsp1720I	GCTNAGC	1 cut(s)	320
BspANI	GGCC	5 cut(s)	60, 109, 203, 242, 253
BspCNI	CTCAG	2 cut(s)	312, 499
BspDI	ATCGAT	1 cut(s)	828
BspEI	TCCGGA	1 cut(s)	84
BspFNI	CGCG	5 cut(s)	150, 152, 206, 374, 432
BspLI	GGNNCC	3 cut(s)	89, 290, 336
BspMI	ACCTGC	3 cut(s)	205, 1058, 1091
BspPI	GGATC	2 cut(s)	231, 883
BsrDI	GCAATG	1 cut(s)	774
BsrI	ACTGG	6 cut(s)	16, 242, 549, 623, 661, 674
BssECI	CCNNGG	3 cut(s)	124, 204, 292
BssMI	GATC	6 cut(s)	223, 799, 825, 829, 888, 1071
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	293, 386
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	1 cut(s)	816
BstACI	GRCGYC	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	1016
BstC8I	GCNNGC	3 cut(s)	154, 419, 631
BstDEI	CTNAG	2 cut(s)	320, 507
BstDSI	CCRYGG	2 cut(s)	124, 204
BstF5I	GGATG	4 cut(s)	115, 171, 703, 970
BstFNI	CGCG	5 cut(s)	150, 152, 206, 374, 432
BstHHI	GCGC	3 cut(s)	131, 152, 432
BstKTI	GATC	6 cut(s)	226, 802, 828, 832, 891, 1074
BstMAI	GTCTC	2 cut(s)	88, 767
BstMBI	GATC	6 cut(s)	223, 799, 825, 829, 888, 1071
BstMCI	CGRYCG	3 cut(s)	110, 254, 832
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 156, 178, 427, 452, 467, 1092
BstNI	CCWGG	2 cut(s)	293, 386
BstNSI	RCATGY	1 cut(s)	950
BstSCI	CCNGG	3 cut(s)	248, 291, 384
BstUI	CGCG	5 cut(s)	150, 152, 206, 374, 432
BstV1I	GCAGC	4 cut(s)	143, 159, 168, 433
BstX2I	RGATCY	1 cut(s)	888
BstYI	RGATCY	1 cut(s)	888
BstZI	CGGCCG	2 cut(s)	107, 251
Bsu15I	ATCGAT	1 cut(s)	828
BsuRI	GGCC	5 cut(s)	60, 109, 203, 242, 253
BsuTUI	ATCGAT	1 cut(s)	828
BtgI	CCRYGG	2 cut(s)	124, 204
BtsCI	GGATG	4 cut(s)	115, 171, 703, 970
BtsI	GCAGTG	2 cut(s)	540, 1042
BtsIMutI	CAGTG	4 cut(s)	386, 540, 556, 1042
BveI	ACCTGC	3 cut(s)	205, 1058, 1091
Cac8I	GCNNGC	3 cut(s)	154, 419, 631
CaiI	CAGNNNCTG	1 cut(s)	385
CfoI	GCGC	3 cut(s)	131, 152, 432
Cfr13I	GGNCC	2 cut(s)	240, 268
Cfr42I	CCGCGG	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	828
CseI	GACGC	2 cut(s)	47, 156
Csp6I	GTAC	3 cut(s)	19, 844, 1099
CspCI	CAANNNNNGTGG	4 cut(s)	535, 570, 862, 897
CviAII	CATG	1 cut(s)	947
CviQI	GTAC	3 cut(s)	19, 844, 1099
DdeI	CTNAG	2 cut(s)	320, 507
DpnI	GATC	6 cut(s)	225, 801, 827, 831, 890, 1073
DpnII	GATC	6 cut(s)	223, 799, 825, 829, 888, 1071
DrdI	GACNNNNNNGTC	2 cut(s)	80, 102
DriI	GACNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	2 cut(s)	80, 102
EaeI	YGGCCR	2 cut(s)	107, 251
EagI	CGGCCG	2 cut(s)	107, 251
Eam1104I	CTCTTC	1 cut(s)	816
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	816
EciI	GGCGGA	2 cut(s)	224, 470
Ecl136II	GAGCTC	1 cut(s)	9
EclXI	CGGCCG	2 cut(s)	107, 251
Eco24I	GRGCYC	2 cut(s)	11, 291
Eco47I	GGWCC	1 cut(s)	268
Eco52I	CGGCCG	2 cut(s)	107, 251
Eco53kI	GAGCTC	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	291, 384
EcoT38I	GRGCYC	2 cut(s)	11, 291
FaeI	CATG	1 cut(s)	950
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	1 cut(s)	946
FauI	CCCGC	1 cut(s)	442
FauNDI	CATATG	1 cut(s)	393
FokI	GGATG	4 cut(s)	102, 178, 710, 977
FriOI	GRGCYC	2 cut(s)	11, 291
GlaI	GCGC	3 cut(s)	130, 151, 431
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	60, 109, 203, 242, 253
HapII	CCGG	4 cut(s)	85, 91, 163, 250
HgaI	GACGC	2 cut(s)	47, 156
HhaI	GCGC	3 cut(s)	131, 152, 432
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	950
Hin6I	GCGC	3 cut(s)	129, 150, 430
HinP1I	GCGC	3 cut(s)	129, 150, 430
HinfI	GANTC	6 cut(s)	96, 192, 569, 604, 653, 896
HpaII	CCGG	4 cut(s)	85, 91, 163, 250
HphI	GGTGA	4 cut(s)	634, 647, 896, 1025
Hpy166II	GTNNAC	1 cut(s)	1019
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	2 cut(s)	85, 803
Hpy8I	GTNNAC	1 cut(s)	1019
Hpy99I	CGWCG	6 cut(s)	41, 49, 108, 150, 187, 308
HpyAV	CCTTC	2 cut(s)	348, 800
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	2 cut(s)	103, 1015
HpyCH4V	TGCA	8 cut(s)	391, 417, 557, 771, 978, 1047, 1053, 1095
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 156, 178, 427, 452, 467, 1092
HpyF3I	CTNAG	2 cut(s)	320, 507
HpySE526I	ACGT	2 cut(s)	103, 1015
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	950
HspAI	GCGC	3 cut(s)	129, 150, 430
Kpn2I	TCCGGA	1 cut(s)	84
KspI	CCGCGG	1 cut(s)	207
Kzo9I	GATC	6 cut(s)	223, 799, 825, 829, 888, 1071
LmnI	GCTCC	5 cut(s)	87, 211, 294, 334, 809
Lsp1109I	GCAGC	4 cut(s)	143, 159, 168, 433
LweI	GCATC	6 cut(s)	124, 159, 493, 780, 955, 987
MaeII	ACGT	2 cut(s)	103, 1015
MaeIII	GTNAC	5 cut(s)	368, 622, 793, 1031, 1065
MalI	GATC	6 cut(s)	225, 801, 827, 831, 890, 1073
MboI	GATC	6 cut(s)	223, 799, 825, 829, 888, 1071
MboII	GAAGA	2 cut(s)	833, 1010
MflI	RGATCY	1 cut(s)	888
MhlI	GDGCHC	3 cut(s)	11, 291, 533
MluCI	AATT	3 cut(s)	297, 562, 640
MluI	ACGCGT	1 cut(s)	372
MlyI	GAGTC	3 cut(s)	90, 201, 578
MmeI	TCCRAC	1 cut(s)	60
MroI	TCCGGA	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	948
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	4 cut(s)	85, 91, 163, 250
MspR9I	CCNGG	3 cut(s)	250, 293, 386
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	2 cut(s)	293, 386
MvnI	CGCG	5 cut(s)	150, 152, 206, 374, 432
MwoI	GCNNNNNNNGC	7 cut(s)	38, 156, 178, 427, 452, 467, 1092
NciI	CCSGG	1 cut(s)	250
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	6 cut(s)	223, 799, 825, 829, 888, 1071
NlaIII	CATG	1 cut(s)	950
NlaIV	GGNNCC	3 cut(s)	89, 290, 336
NmuCI	GTSAC	3 cut(s)	622, 793, 1031
NspI	RCATGY	1 cut(s)	950
PaqCI	CACCTGC	3 cut(s)	205, 1058, 1091
PciI	ACATGT	1 cut(s)	946
PcsI	WCGNNNNNNNCGW	2 cut(s)	142, 587
PctI	GAATGC	1 cut(s)	926
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	3 cut(s)	604, 653, 896
Ple19I	CGATCG	1 cut(s)	832
PleI	GAGTC	3 cut(s)	90, 200, 577
PpsI	GAGTC	3 cut(s)	90, 200, 577
Ppu21I	YACGTR	1 cut(s)	1016
PscI	ACATGT	1 cut(s)	946
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	291, 384
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	2 cut(s)	291, 384
PspN4I	GGNNCC	3 cut(s)	89, 290, 336
PspPI	GGNCC	2 cut(s)	240, 268
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	888
PvuI	CGATCG	1 cut(s)	832
RsaI	GTAC	3 cut(s)	20, 845, 1100
RsaNI	GTAC	3 cut(s)	19, 844, 1099
SacI	GAGCTC	1 cut(s)	11
SacII	CCGCGG	1 cut(s)	207
Sau3AI	GATC	6 cut(s)	223, 799, 825, 829, 888, 1071
Sau96I	GGNCC	2 cut(s)	240, 268
SchI	GAGTC	3 cut(s)	90, 201, 578
ScrFI	CCNGG	3 cut(s)	250, 293, 386
SduI	GDGCHC	3 cut(s)	11, 291, 533
SfaNI	GCATC	6 cut(s)	124, 159, 493, 780, 955, 987
Sfr303I	CCGCGG	1 cut(s)	207
SgrBI	CCGCGG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	3 cut(s)	297, 562, 640
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	3 cut(s)	248, 291, 384
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	2 cut(s)	106, 1018
TaqI	TCGA	1 cut(s)	828
TasI	AATT	3 cut(s)	297, 562, 640
TatI	WGTACW	2 cut(s)	843, 1098
TauI	GCSGC	7 cut(s)	52, 112, 115, 162, 206, 209, 446
TfiI	GAWTC	3 cut(s)	604, 653, 896
TscAI	CASTG	4 cut(s)	386, 547, 556, 1049
TseFI	GTSAC	3 cut(s)	622, 793, 1031
TseI	GCWGC	4 cut(s)	131, 156, 172, 446
Tsp45I	GTSAC	3 cut(s)	622, 793, 1031
TspDTI	ATGAA	1 cut(s)	471
TspGWI	ACGGA	4 cut(s)	113, 185, 331, 1105
TspRI	CASTG	4 cut(s)	386, 547, 556, 1049
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	562, 640
XceI	RCATGY	1 cut(s)	950
XcmI	CCANNNNNNNNNTGG	1 cut(s)	899
XmnI	GAANNNNTTC	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.