AT3G61580

desaturase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
22786022 .. 22787972
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61580.1

Sequence Viewer

Length: 1350 bp
ATGGCGGAAGAGACGGAGAAAAAGTACATTACGAACGAAGATCTTAAAAAACACAACAAATCTGGAGATCTATGGATCGCGATTCAAGGCAAGGTCTACAACGTCTCCGATTGGATTAAAACTCATCCCGGAGGCGACACGGTGATTCTCAATCTCGTTGGTCAAGACGTCACCGATGCTTTCATCGCATTTCATCCCGGAACCGCTTGGCACCATCTCGACCATCTCTTCACCGGTTACCACATCAGAGATTTCCAAGTCTCCGAAGTCTCACGCGATTACCGTCGTATGGCTGCCGAGTTTCGTAAACTCGGTCTCTTCGAAAACAAAGGTCACGTTACTCTCTACACTCTAGCCTTCGTCGCCGCCATGTTCCTCGGAGTTCTCTACGGTGTTTTGGCTTGTACCTCCGTCTTCGCTCACCAAATCGCCGCCGCGCTTCTCGGTCTCCTCTGGATCCAGAGCGCTTACATAGGTCACGATTCTGGTCATTACGTTATCATGTCGAACAAATCTTATAACAGATTCGCTCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCGTGGTGGAAATGGACTCACAATGCTCATCATCTAGCTTGTAACAGCCTCGATTACGATCCAGATCTACAACACATCCCTGTCTTCGCCGTCTCCACCAAATTCTTCTCCTCATTGACCTCGAGATTCTACGATCGGAAACTCACGTTTGATCCAGTCGCGAGATTCTTAGTCAGCTATCAACACTTTACTTATTATCCAGTTATGTGCTTTGGAAGAATCAATCTCTTCATTCAAACGTTTCTCTTGCTCTTCTCCAAACGTGAAGTACCAGATCGTGCTTTAAACTTCGCCGGAATCTTAGTCTTCTGGACTTGGTTCCCACTCTTAGTCTCATGTCTACCAAACTGGCCTGAGAGATTCTTCTTCGTCTTCACAAGCTTCACCGTCACGGCGCTTCAACACATTCAATTCACGCTTAACCATTTCGCTGCTGATGTCTACGTTGGTCCACCCACCGGTAGCGACTGGTTCGAGAAGCAAGCGGCGGGAACAATCGATATCTCTTGTAGATCATACATGGATTGGTTCTTTGGTGGATTACAGTTTCAGCTTGAGCATCATTTGTTCCCTCGCTTACCTCGTTGCCATCTCCGGAAAGTTTCTCCGGTGGTTCAAGAGCTTTGCAAGAAGCATAATCTTCCGTATAGGAGTATGTCGTGGTTTGAAGCAAATGTGTTGACCATTAACACTTTGAAGACAGCAGCTTATCAAGCTAGAGACGTGGCTAATCCGGTGGTTAAGAACTTGGTTTGGGAAGCTTTGAATACTCATGGCTAA

Protein Analysis

449

Amino Acids

51.67

Weight (kDa)

8.5

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 11 - 81 1.3e-24 Cytochrome b5-like Heme/Steroid binding domain
FA_desaturase PF00487 142 - 408 4.6e-32 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 210
AccI GTMKAC 3 cut(s) 96, 910, 1011
AccII CGCG 5 cut(s) 80, 276, 437, 572, 731
AccIII TCCGGA 1 cut(s) 1164
AciI CCGC 7 cut(s) 5, 204, 366, 432, 435, 1055, 1058
AclI AACGTT 1 cut(s) 809
AclWI GGATC 5 cut(s) 83, 451, 464, 623, 716
AcsI RAATTY 1 cut(s) 671
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 3 cut(s) 26, 406, 840
AfeI AGCGCT 1 cut(s) 466
AfiI CCNNNNNNNGG 2 cut(s) 289, 1028
AgeI ACCGGT 2 cut(s) 233, 1028
AgsI TTSAA 8 cut(s) 86, 806, 971, 980, 1187, 1238, 1267, 1336
AjiI CACGTC 1 cut(s) 1294
AluBI AGCT 9 cut(s) 535, 608, 747, 951, 1123, 1192, 1277, 1286, 1331
AluI AGCT 9 cut(s) 535, 608, 747, 951, 1123, 1192, 1277, 1286, 1331
AlwI GGATC 5 cut(s) 83, 451, 464, 623, 716
Ama87I CYCGRG 1 cut(s) 691
Aor13HI TCCGGA 1 cut(s) 1164
Aor51HI AGCGCT 1 cut(s) 466
AoxI GGCC 1 cut(s) 920
ApeKI GCWGC 3 cut(s) 293, 1001, 1274
ApoI RAATTY 1 cut(s) 671
AsiGI ACCGGT 2 cut(s) 233, 1028
AspLEI GCGC 3 cut(s) 439, 467, 967
AspS9I GGNCC 1 cut(s) 1019
AsuC2I CCSGG 2 cut(s) 129, 198
AsuHPI GGTGA 6 cut(s) 154, 163, 223, 413, 547, 946
AsuII TTCGAA 1 cut(s) 321
AvaI CYCGRG 1 cut(s) 691
AvaII GGWCC 1 cut(s) 1019
BamHI GGATCC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 210
BbsI GAAGAC 5 cut(s) 406, 646, 868, 934, 1274
BbvI GCAGC 3 cut(s) 280, 988, 1286
BccI CCATC 3 cut(s) 222, 231, 1167
BceAI ACGGC 2 cut(s) 644, 978
BcnI CCSGG 2 cut(s) 129, 198
BfaI CTAG 3 cut(s) 353, 605, 1287
BfoI RGCGCY 2 cut(s) 468, 968
BglII AGATCT 3 cut(s) 40, 67, 634
BisI GCNGC 7 cut(s) 294, 366, 432, 435, 1002, 1056, 1275
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 7 cut(s) 295, 367, 433, 436, 1003, 1057, 1276
Bme1390I CCNGG 2 cut(s) 129, 198
Bme18I GGWCC 1 cut(s) 1019
BmeT110I CYCGRG 1 cut(s) 691
BmgBI CACGTC 1 cut(s) 1294
BmgT120I GGNCC 1 cut(s) 1019
BmiI GGNNCC 4 cut(s) 202, 212, 458, 890
BmrFI CCNGG 2 cut(s) 129, 198
BmsI GCATC 2 cut(s) 166, 1138
BpiI GAAGAC 5 cut(s) 406, 646, 868, 934, 1274
BpmI CTGGAG 1 cut(s) 84
Bpu1102I GCTNAGC 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 1145
BpuMI CCSGG 2 cut(s) 129, 198
Bsa29I ATCGAT 1 cut(s) 1068
BsaBI GATNNNNATC 2 cut(s) 627, 633
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 320, 452
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 7 cut(s) 233, 542, 557, 1028, 1164, 1177, 1303
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 1028
Bse118I RCCGGY 2 cut(s) 233, 1028
Bse1I ACTGG 4 cut(s) 725, 770, 923, 1043
Bse8I GATNNNNATC 2 cut(s) 627, 633
BseAI TCCGGA 1 cut(s) 1164
BseCI ATCGAT 1 cut(s) 1068
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 3 cut(s) 124, 193, 645
BseJI GATNNNNATC 2 cut(s) 627, 633
BseLI CCNNNNNNNGG 2 cut(s) 289, 1028
BseMII CTCAG 2 cut(s) 545, 915
BseNI ACTGG 4 cut(s) 725, 770, 923, 1043
BseRI GAGGAG 2 cut(s) 440, 670
BseXI GCAGC 3 cut(s) 280, 988, 1286
Bsh1236I CGCG 5 cut(s) 80, 276, 437, 572, 731
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 1 cut(s) 922
BshNI GGYRCC 1 cut(s) 210
BshTI ACCGGT 2 cut(s) 233, 1028
BshVI ATCGAT 1 cut(s) 1068
BsiEI CGRYCG 1 cut(s) 706
BsiHKCI CYCGRG 1 cut(s) 691
BslI CCNNNNNNNGG 2 cut(s) 289, 1028
BsmBI CGTCTC 4 cut(s) 5, 109, 667, 1284
BsnI GGCC 1 cut(s) 922
Bso31I GGTCTC 2 cut(s) 320, 452
BsoBI CYCGRG 1 cut(s) 691
Bsp119I TTCGAA 1 cut(s) 321
Bsp13I TCCGGA 1 cut(s) 1164
Bsp1720I GCTNAGC 1 cut(s) 531
Bsp68I TCGCGA 2 cut(s) 80, 731
BspACI CCGC 7 cut(s) 5, 204, 366, 432, 435, 1055, 1058
BspANI GGCC 1 cut(s) 922
BspCNI CTCAG 2 cut(s) 544, 916
BspDI ATCGAT 1 cut(s) 1068
BspEI TCCGGA 1 cut(s) 1164
BspFNI CGCG 5 cut(s) 80, 276, 437, 572, 731
BspLI GGNNCC 4 cut(s) 202, 212, 458, 890
BspPI GGATC 5 cut(s) 83, 451, 464, 623, 716
BspQI GCTCTTC 1 cut(s) 827
BspT104I TTCGAA 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 2 cut(s) 320, 452
BsrFI RCCGGY 2 cut(s) 233, 1028
BsrI ACTGG 4 cut(s) 725, 770, 923, 1043
BssAI RCCGGY 2 cut(s) 233, 1028
BssECI CCNNGG 1 cut(s) 376
BssNI GRCGYC 1 cut(s) 168
Bst4CI ACNGT 6 cut(s) 142, 284, 392, 551, 958, 1116
Bst6I CTCTTC 5 cut(s) 3, 233, 323, 803, 827
BstACI GRCGYC 1 cut(s) 168
BstBI TTCGAA 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 1053
BstDEI CTNAG 5 cut(s) 531, 739, 871, 898, 924
BstEII GGTNACC 1 cut(s) 236
BstF5I GGATG 3 cut(s) 124, 193, 645
BstFNI CGCG 5 cut(s) 80, 276, 437, 572, 731
BstH2I RGCGCY 2 cut(s) 468, 968
BstHHI GCGC 3 cut(s) 439, 467, 967
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 3 cut(s) 185, 362, 1283
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 127, 196
BstUI CGCG 5 cut(s) 80, 276, 437, 572, 731
BstV1I GCAGC 3 cut(s) 280, 988, 1286
BstV2I GAAGAC 5 cut(s) 406, 646, 868, 934, 1274
BstX2I RGATCY 4 cut(s) 40, 67, 456, 634
BstYI RGATCY 4 cut(s) 40, 67, 456, 634
Bsu15I ATCGAT 1 cut(s) 1068
BsuRI GGCC 1 cut(s) 922
BsuTUI ATCGAT 1 cut(s) 1068
BtgZI GCGATG 1 cut(s) 169
BtrI CACGTC 1 cut(s) 1294
BtsCI GGATG 3 cut(s) 124, 193, 645
BtuMI TCGCGA 2 cut(s) 80, 731
Cac8I GCNNGC 1 cut(s) 1053
CfoI GCGC 3 cut(s) 439, 467, 967
Cfr10I RCCGGY 2 cut(s) 233, 1028
Cfr13I GGNCC 1 cut(s) 1019
ClaI ATCGAT 1 cut(s) 1068
Csp6I GTAC 3 cut(s) 25, 405, 839
CspAI ACCGGT 2 cut(s) 233, 1028
CviAII CATG 5 cut(s) 370, 502, 906, 1090, 1343
CviQI GTAC 3 cut(s) 25, 405, 839
DdeI CTNAG 5 cut(s) 531, 739, 871, 898, 924
DraI TTTAAA 1 cut(s) 855
Eam1104I CTCTTC 5 cut(s) 3, 233, 323, 803, 827
EarI CTCTTC 5 cut(s) 3, 233, 323, 803, 827
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 2 cut(s) 320, 452
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 1 cut(s) 1019
Eco47III AGCGCT 1 cut(s) 466
Eco88I CYCGRG 1 cut(s) 691
Eco91I GGTNACC 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 236
EcoRV GATATC 1 cut(s) 1072
Esp3I CGTCTC 4 cut(s) 5, 109, 667, 1284
FaeI CATG 5 cut(s) 373, 505, 909, 1093, 1346
FatI CATG 5 cut(s) 369, 501, 905, 1089, 1342
FauI CCCGC 1 cut(s) 1051
FblI GTMKAC 3 cut(s) 96, 910, 1011
Fnu4HI GCNGC 7 cut(s) 294, 366, 432, 435, 1002, 1056, 1275
FokI GGATG 3 cut(s) 111, 180, 632
Fsp4HI GCNGC 7 cut(s) 294, 366, 432, 435, 1002, 1056, 1275
FspBI CTAG 3 cut(s) 353, 605, 1287
GlaI GCGC 3 cut(s) 438, 466, 966
GluI GCNGC 7 cut(s) 294, 366, 432, 435, 1002, 1056, 1275
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 2 cut(s) 468, 968
HaeIII GGCC 1 cut(s) 922
HhaI GCGC 3 cut(s) 439, 467, 967
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 5 cut(s) 373, 505, 909, 1093, 1346
Hin6I GCGC 3 cut(s) 437, 465, 965
HinP1I GCGC 3 cut(s) 437, 465, 965
HincII GTYRAC 1 cut(s) 1251
HindII GTYRAC 1 cut(s) 1251
HindIII AAGCTT 2 cut(s) 949, 1329
HphI GGTGA 6 cut(s) 154, 163, 223, 413, 547, 946
Hpy166II GTNNAC 6 cut(s) 97, 308, 911, 1012, 1022, 1251
Hpy188I TCNGA 5 cut(s) 109, 248, 265, 380, 708
Hpy8I GTNNAC 6 cut(s) 97, 308, 911, 1012, 1022, 1251
Hpy99I CGWCG 2 cut(s) 288, 365
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 6 cut(s) 142, 284, 392, 551, 958, 1116
HpyCH4IV ACGT 9 cut(s) 102, 168, 336, 495, 716, 809, 832, 1014, 1293
HpyCH4V TGCA 1 cut(s) 1197
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 362, 1283
HpyF3I CTNAG 5 cut(s) 531, 739, 871, 898, 924
HpySE526I ACGT 9 cut(s) 102, 168, 336, 495, 716, 809, 832, 1014, 1293
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 5 cut(s) 373, 505, 909, 1093, 1346
HspAI GCGC 3 cut(s) 437, 465, 965
Kpn2I TCCGGA 1 cut(s) 1164
LguI GCTCTTC 1 cut(s) 827
Lsp1109I GCAGC 3 cut(s) 280, 988, 1286
LweI GCATC 2 cut(s) 166, 1138
MaeI CTAG 3 cut(s) 353, 605, 1287
MaeII ACGT 9 cut(s) 102, 168, 336, 495, 716, 809, 832, 1014, 1293
MaeIII GTNAC 8 cut(s) 169, 236, 332, 337, 476, 545, 611, 958
MflI RGATCY 4 cut(s) 40, 67, 456, 634
MluCI AATT 2 cut(s) 671, 980
MlyI GAGTC 1 cut(s) 580
MnlI CCTC 9 cut(s) 125, 386, 418, 461, 629, 691, 700, 1152, 1161
MroI TCCGGA 1 cut(s) 1164
MseI TTAA 6 cut(s) 45, 117, 854, 990, 1257, 1311
MspR9I CCNGG 2 cut(s) 129, 198
MvnI CGCG 5 cut(s) 80, 276, 437, 572, 731
MwoI GCNNNNNNNGC 3 cut(s) 185, 362, 1283
NciI CCSGG 2 cut(s) 129, 198
NlaIII CATG 5 cut(s) 373, 505, 909, 1093, 1346
NlaIV GGNNCC 4 cut(s) 202, 212, 458, 890
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 4 cut(s) 169, 332, 476, 958
NruI TCGCGA 2 cut(s) 80, 731
NspV TTCGAA 1 cut(s) 321
PaeR7I CTCGAG 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 827
PcsI WCGNNNNNNNCGW 3 cut(s) 280, 318, 1150
PfoI TCCNGGA 2 cut(s) 127, 196
PinAI ACCGGT 2 cut(s) 233, 1028
PkrI GCNGC 7 cut(s) 295, 367, 433, 436, 1003, 1057, 1276
Ple19I CGATCG 1 cut(s) 706
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PsiI TTATAA 1 cut(s) 519
Psp1406I AACGTT 1 cut(s) 809
PspEI GGTNACC 1 cut(s) 236
PspN4I GGNNCC 4 cut(s) 202, 212, 458, 890
PspPI GGNCC 1 cut(s) 1019
PsuI RGATCY 4 cut(s) 40, 67, 456, 634
PvuI CGATCG 1 cut(s) 706
RruI TCGCGA 2 cut(s) 80, 731
RsaI GTAC 3 cut(s) 26, 406, 840
RsaNI GTAC 3 cut(s) 25, 405, 839
SapI GCTCTTC 1 cut(s) 827
SaqAI TTAA 6 cut(s) 45, 117, 854, 990, 1257, 1311
SatI GCNGC 7 cut(s) 294, 366, 432, 435, 1002, 1056, 1275
Sau96I GGNCC 1 cut(s) 1019
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 2 cut(s) 129, 198
SfaNI GCATC 2 cut(s) 166, 1138
Sfr274I CTCGAG 1 cut(s) 691
SfuI TTCGAA 1 cut(s) 321
SinI GGWCC 1 cut(s) 1019
SlaI CTCGAG 1 cut(s) 691
SmlI CTYRAG 2 cut(s) 691, 1124
SmoI CTYRAG 2 cut(s) 691, 1124
Sse9I AATT 2 cut(s) 671, 980
SsiI CCGC 7 cut(s) 5, 204, 366, 432, 435, 1055, 1058
SspMI CTAG 3 cut(s) 353, 605, 1287
StyD4I CCNGG 2 cut(s) 127, 196
TaaI ACNGT 6 cut(s) 142, 284, 392, 551, 958, 1116
TaiI ACGT 9 cut(s) 105, 171, 339, 498, 719, 812, 835, 1017, 1296
TaqI TCGA 7 cut(s) 219, 321, 506, 621, 692, 1044, 1068
TaqII GACCGA 2 cut(s) 302, 434
TasI AATT 2 cut(s) 671, 980
TatI WGTACW 1 cut(s) 24
TauI GCSGC 4 cut(s) 368, 434, 437, 1058
Tru1I TTAA 6 cut(s) 45, 117, 854, 990, 1257, 1311
Tru9I TTAA 6 cut(s) 45, 117, 854, 990, 1257, 1311
TseFI GTSAC 4 cut(s) 169, 332, 476, 958
TseI GCWGC 3 cut(s) 293, 1001, 1274
Tsp45I GTSAC 4 cut(s) 169, 332, 476, 958
TspDTI ATGAA 3 cut(s) 172, 182, 790
TspGWI ACGGA 3 cut(s) 29, 400, 1203
VpaK11BI GGWCC 1 cut(s) 1019
XapI RAATTY 1 cut(s) 671
XhoI CTCGAG 1 cut(s) 691
XmiI GTMKAC 3 cut(s) 96, 910, 1011
XspI CTAG 3 cut(s) 353, 605, 1287
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.