Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002071.1

Orthogroup ID

OG0003231

Physical Location & Seq

Genomic Coordinates Reverse (-)

51680 .. 52987

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002071.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ctgaagctgcacaacaagcctggggacctatggatctctatccagggcaagatttacaatgtctcagattgggttcatgatcacccaggtggagctaccattttgtatgatttgggtggccaagatgttactgatggattcatggcataccatcctagcactgtgtggaagcgcctagggaagtacttcaatgggtatcatctcaaggatttcgagatctcagaggcgtccaaggactataggaagcttcatgctgagattacgcagatgggtttgttcgaaaacaaagggcatggggctctttacaatattacaactattgttgttttgcttaaccttgttgtttatggtgtgttgaagtctgatagtgtgttggtccattttgtttgtgctgtgatgttggggatcttgtggattatgggtgcttatatgggtcatgatgcgggtcattaccaagtcatgtcaagccgtaagtggaaccaaattattcaggttctggctgggaattgccttactgggattagcattgcttggtggaaatggactcacaacgcacatcatattgcctgcaacagcctggattatgatcctgatcttcaacacatgccggtctttgcagtgtccacaaagttctttcattcgattacttcagtcttttatgggaggaagttggattttgatcatgtggctaggttcttagtcagccatcagcattttacttattatcctatcatgattgttggaagggtcaacttgtttattcagaccttcttgttgttgttgtccaagagaagcatccccaacaggactatgaacataatgggaatccttgttttctggacttggtttcctctgcttgtcatgtgtctgcccagttggagtgagagggtgatgttcgtgcttgtgagctttgcggtgacagcgcttcagcacattcagttcactttgaaccatttctcaggagatacttatcttggaccaccaactgggaatgattggttcgagaagcagactgctggaaccattgatatttcgtgctcaaagtacatggattggttctttggtggtctgcagtttcagctagagcaccatttgttcccccgattaccccgatgccaactgaggacagtttctccaaccgtgaaggaactatgcaagaagcacaagttgcctcacagaagcttgtccttctgggatgccaatgtgaccaccattagggttctcaggaaagctgccctgcaggcttgggacatgacccttcctgtcccgaagaacttggcttgggaagctattaatacccatggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0030148 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0050896 GO:0051716 GO:0052631 GO:0055114 GO:0070417 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_desaturase

Protein Analysis

435

Amino Acids

49.99

Weight (kDa)

9.0

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46210 AT3G61580
fragaria_vesca	FvH4_7g15550 FvH4_7g15550 FvH4_7g15570
malus_domestica	MD01G1072900.v1.1 MD01G1073000.v1.1 MD07G1129700.v1.1 MD07G1130000.v1.1
prunus_persica	Prupe.2G179200_v2.0.a1 Prupe.2G179200_v2.0.a1 Prupe.2G179400_v2.0.a1
pyrus_communis	pycom01g10190 pycom01g10200 pycom07g12680 pycom07g12700
rosa_chinensis	RchiOBHm_Chr1g0358201 RchiOBHm_Chr1g0358241
rosa_laevigata	RLG00000027980 RLG00000027983
rosa_multiflora	Rmu_sc0002071.1_g000009 Rmu_sc0007072.1_g000001 Rmu_sc0023145.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298340 Rroxscaffold_4G00298370
rosa_rugosa	Rorug01G0259800 Rorug01G0259900
rosa_samantha	Rh1AG273500 Rh1AG273900 Rh1BG240700 Rh1BG241000 Rh1CG257100 Rh1CG257500 Rh1DG269600 Rh1DG269700
rosa_wichuraiana	Rw1G024450 Rw1G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	986
AciI	CCGC	2 cut(s)	443, 914
AclWI	GGATC	3 cut(s)	41, 413, 581
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	3 cut(s)	23, 633, 911
AcyI	GRCGYC	1 cut(s)	227
AdeI	CACNNNGTG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	185, 1046
AfeI	AGCGCT	1 cut(s)	924
AfiI	CCNNNNNNNGG	2 cut(s)	986, 1215
AgsI	TTSAA	4 cut(s)	190, 358, 599, 949
AjnI	CCWGG	4 cut(s)	19, 42, 85, 576
AleI	CACNNNNGTG	1 cut(s)	87
AluBI	AGCT	8 cut(s)	7, 95, 247, 909, 1081, 1182, 1232, 1289
AluI	AGCT	8 cut(s)	7, 95, 247, 909, 1081, 1182, 1232, 1289
Alw21I	GWGCWC	2 cut(s)	1040, 1089
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	3 cut(s)	41, 413, 581
AlwNI	CAGNNNCTG	1 cut(s)	496
Aor51HI	AGCGCT	1 cut(s)	924
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	7, 1232
AseI	ATTAAT	1 cut(s)	1293
Asp700I	GAANNNNTTC	2 cut(s)	185, 953
AspA2I	CCTAGG	1 cut(s)	175
AspLEI	GCGC	2 cut(s)	174, 925
AspS9I	GGNCC	3 cut(s)	25, 376, 977
AsuHPI	GGTGA	3 cut(s)	74, 901, 928
AsuII	TTCGAA	1 cut(s)	279
AvaII	GGWCC	3 cut(s)	25, 376, 977
AvrII	CCTAGG	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	2 cut(s)	1040, 1089
BbvI	GCAGC	1 cut(s)	1219
BccI	CCATC	4 cut(s)	128, 159, 262, 714
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	4 cut(s)	21, 44, 87, 578
BclI	TGATCA	2 cut(s)	79, 679
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	4 cut(s)	156, 176, 690, 1082
BfmI	CTRYAG	3 cut(s)	238, 1070, 1238
BfoI	RGCGCY	2 cut(s)	175, 926
BglI	GCCNNNNNGGC	1 cut(s)	1241
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	2 cut(s)	8, 1233
BlnI	CCTAGG	1 cut(s)	175
BlsI	GCNGC	2 cut(s)	9, 1234
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	4 cut(s)	21, 44, 87, 578
Bme18I	GGWCC	3 cut(s)	25, 376, 977
BmgT120I	GGNCC	3 cut(s)	25, 376, 977
BmiI	GGNNCC	3 cut(s)	26, 479, 1021
BmrFI	CCNGG	4 cut(s)	21, 44, 87, 578
BmrI	ACTGGG	3 cut(s)	525, 867, 996
BmsI	GCATC	4 cut(s)	430, 804, 1103, 1186
BmuI	ACTGGG	3 cut(s)	525, 867, 996
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	188
BsaBI	GATNNNNATC	5 cut(s)	38, 585, 591, 678, 969
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	6 cut(s)	20, 43, 85, 175, 231, 1300
BsaXI	ACNNNNNCTCC	2 cut(s)	1117, 1147
Bsc4I	CCNNNNNNNGG	2 cut(s)	986, 1215
Bse118I	RCCGGY	1 cut(s)	607
Bse1I	ACTGG	3 cut(s)	520, 873, 991
Bse3DI	GCAATG	1 cut(s)	525
Bse8I	GATNNNNATC	5 cut(s)	38, 585, 591, 678, 969
BseBI	CCWGG	4 cut(s)	21, 44, 87, 578
BseDI	CCNNGG	6 cut(s)	20, 43, 85, 175, 231, 1300
BseGI	GGATG	3 cut(s)	151, 795, 1201
BseJI	GATNNNNATC	5 cut(s)	38, 585, 591, 678, 969
BseLI	CCNNNNNNNGG	2 cut(s)	986, 1215
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	6 cut(s)	78, 234, 246, 972, 1112, 1237
BseNI	ACTGG	3 cut(s)	520, 873, 991
BseXI	GCAGC	1 cut(s)	1219
BseYI	CCCAGC	1 cut(s)	500
BshFI	GGCC	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	1040, 1089
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	3 cut(s)	38, 1250, 1262
BslI	CCNNNNNNNGG	2 cut(s)	986, 1215
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	3 cut(s)	38, 1250, 1262
BsnI	GGCC	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	3 cut(s)	301, 1040, 1089
Bsp143I	GATC	7 cut(s)	33, 79, 216, 405, 586, 592, 679
Bsp19I	CCATGG	1 cut(s)	1300
BspACI	CCGC	2 cut(s)	443, 914
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	6 cut(s)	77, 233, 247, 971, 1113, 1236
BspHI	TCATGA	3 cut(s)	76, 436, 732
BspLI	GGNNCC	3 cut(s)	26, 479, 1021
BspMAI	CTGCAG	2 cut(s)	1074, 1242
BspPI	GGATC	3 cut(s)	41, 413, 581
BspT104I	TTCGAA	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	1 cut(s)	607
BsrI	ACTGG	3 cut(s)	520, 873, 991
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	6 cut(s)	20, 43, 85, 175, 231, 1300
BssMI	GATC	7 cut(s)	33, 79, 216, 405, 586, 592, 679
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	3 cut(s)	175, 231, 1300
Bst2UI	CCWGG	4 cut(s)	21, 44, 87, 578
Bst4CI	ACNGT	3 cut(s)	163, 1129, 1141
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	1168
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	568, 1242
BstDEI	CTNAG	7 cut(s)	64, 220, 255, 697, 958, 1121, 1223
BstDSI	CCRYGG	1 cut(s)	1300
BstF5I	GGATG	3 cut(s)	151, 795, 1201
BstH2I	RGCGCY	2 cut(s)	175, 926
BstHHI	GCGC	2 cut(s)	174, 925
BstKTI	GATC	7 cut(s)	36, 82, 219, 408, 589, 595, 682
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	7 cut(s)	33, 79, 216, 405, 586, 592, 679
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 920, 1078, 1168, 1241, 1286
BstNI	CCWGG	4 cut(s)	21, 44, 87, 578
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	4 cut(s)	19, 42, 85, 576
BstSFI	CTRYAG	3 cut(s)	238, 1070, 1238
BstV1I	GCAGC	1 cut(s)	1219
BstX2I	RGATCY	3 cut(s)	33, 216, 405
BstYI	RGATCY	3 cut(s)	33, 216, 405
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	1300
BtsCI	GGATG	3 cut(s)	151, 795, 1201
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	2 cut(s)	159, 624
Cac8I	GCNNGC	2 cut(s)	568, 1242
CaiI	CAGNNNCTG	1 cut(s)	496
CciI	TCATGA	3 cut(s)	76, 436, 732
CfoI	GCGC	2 cut(s)	174, 925
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	3 cut(s)	25, 376, 977
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	184, 1045
CviQI	GTAC	2 cut(s)	184, 1045
DdeI	CTNAG	7 cut(s)	64, 220, 255, 697, 958, 1121, 1223
DpnI	GATC	7 cut(s)	35, 81, 218, 407, 588, 594, 681
DpnII	GATC	7 cut(s)	33, 79, 216, 405, 586, 592, 679
DraIII	CACNNNGTG	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	175, 231, 1300
Eco24I	GRGCYC	1 cut(s)	301
Eco47I	GGWCC	3 cut(s)	25, 376, 977
Eco47III	AGCGCT	1 cut(s)	924
Eco57I	CTGAAG	3 cut(s)	23, 633, 911
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRII	CCWGG	4 cut(s)	19, 42, 85, 576
EcoT14I	CCWWGG	3 cut(s)	175, 231, 1300
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	3 cut(s)	175, 231, 1300
FaqI	GGGAC	3 cut(s)	38, 1250, 1262
FauI	CCCGC	1 cut(s)	436
FbaI	TGATCA	2 cut(s)	79, 679
Fnu4HI	GCNGC	2 cut(s)	8, 1233
FokI	GGATG	3 cut(s)	138, 782, 1208
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	8, 1233
FspBI	CTAG	4 cut(s)	156, 176, 690, 1082
GlaI	GCGC	2 cut(s)	173, 924
GluI	GCNGC	2 cut(s)	8, 1233
GsaI	CCCAGC	1 cut(s)	504
HaeII	RGCGCY	2 cut(s)	175, 926
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	608
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	2 cut(s)	174, 925
Hin1I	GRCGYC	1 cut(s)	227
Hin6I	GCGC	2 cut(s)	172, 923
HinP1I	GCGC	2 cut(s)	172, 923
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	2 cut(s)	245, 1180
HinfI	GANTC	3 cut(s)	138, 544, 825
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	3 cut(s)	74, 901, 928
Hpy166II	GTNNAC	3 cut(s)	624, 751, 942
Hpy188I	TCNGA	4 cut(s)	67, 223, 364, 765
Hpy8I	GTNNAC	3 cut(s)	624, 751, 942
HpyAV	CCTTC	5 cut(s)	738, 778, 1138, 1198, 1268
HpyCH4III	ACNGT	3 cut(s)	163, 1129, 1141
HpyCH4V	TGCA	6 cut(s)	10, 570, 617, 1072, 1155, 1240
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 920, 1078, 1168, 1241, 1286
HpyF3I	CTNAG	7 cut(s)	64, 220, 255, 697, 958, 1121, 1223
Hsp92I	GRCGYC	1 cut(s)	227
HspAI	GCGC	2 cut(s)	172, 923
Ksp22I	TGATCA	2 cut(s)	79, 679
Kzo9I	GATC	7 cut(s)	33, 79, 216, 405, 586, 592, 679
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	1 cut(s)	1219
LweI	GCATC	4 cut(s)	430, 804, 1103, 1186
MaeI	CTAG	4 cut(s)	156, 176, 690, 1082
MaeIII	GTNAC	3 cut(s)	127, 916, 1204
MalI	GATC	7 cut(s)	35, 81, 218, 407, 588, 594, 681
MboI	GATC	7 cut(s)	33, 79, 216, 405, 586, 592, 679
MboII	GAAGA	2 cut(s)	587, 1282
MflI	RGATCY	3 cut(s)	33, 216, 405
MhlI	GDGCHC	3 cut(s)	301, 1040, 1089
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	2 cut(s)	483, 505
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	4 cut(s)	651, 721, 857, 1160
MnlI	CCTC	6 cut(s)	217, 657, 861, 879, 1116, 1182
Mox20I	TGGCCA	1 cut(s)	120
MroXI	GAANNNNTTC	2 cut(s)	185, 953
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	2 cut(s)	333, 1293
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	120
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	4 cut(s)	21, 44, 87, 578
MvaI	CCWGG	4 cut(s)	21, 44, 87, 578
MwoI	GCNNNNNNNGC	6 cut(s)	16, 920, 1078, 1168, 1241, 1286
NcoI	CCATGG	1 cut(s)	1300
NdeII	GATC	7 cut(s)	33, 79, 216, 405, 586, 592, 679
NlaIV	GGNNCC	3 cut(s)	26, 479, 1021
NmuCI	GTSAC	2 cut(s)	916, 1204
NspI	RCATGY	1 cut(s)	607
NspV	TTCGAA	1 cut(s)	279
OliI	CACNNNNGTG	1 cut(s)	87
PagI	TCATGA	3 cut(s)	76, 436, 732
PdmI	GAANNNNTTC	2 cut(s)	185, 953
PfeI	GAWTC	2 cut(s)	138, 825
PflMI	CCANNNNNTGG	1 cut(s)	986
PkrI	GCNGC	2 cut(s)	9, 1234
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	1293
Psp5II	RGGWCCY	1 cut(s)	25
Psp6I	CCWGG	4 cut(s)	19, 42, 85, 576
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	4 cut(s)	19, 42, 85, 576
PspN4I	GGNNCC	3 cut(s)	26, 479, 1021
PspPI	GGNCC	3 cut(s)	25, 376, 977
PspPPI	RGGWCCY	1 cut(s)	25
PstI	CTGCAG	2 cut(s)	1074, 1242
PstNI	CAGNNNCTG	1 cut(s)	496
PsuI	RGATCY	3 cut(s)	33, 216, 405
RsaI	GTAC	2 cut(s)	185, 1046
RsaNI	GTAC	2 cut(s)	184, 1045
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	333, 1293
SatI	GCNGC	2 cut(s)	8, 1233
Sau3AI	GATC	7 cut(s)	33, 79, 216, 405, 586, 592, 679
Sau96I	GGNCC	3 cut(s)	25, 376, 977
SbfI	CCTGCAGG	1 cut(s)	1242
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	4 cut(s)	21, 44, 87, 578
SdaI	CCTGCAGG	1 cut(s)	1242
SduI	GDGCHC	3 cut(s)	301, 1040, 1089
SfaNI	GCATC	4 cut(s)	430, 804, 1103, 1186
SfcI	CTRYAG	3 cut(s)	238, 1070, 1238
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	3 cut(s)	25, 376, 977
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse8387I	CCTGCAGG	1 cut(s)	1242
Sse9I	AATT	2 cut(s)	483, 505
SsiI	CCGC	2 cut(s)	443, 914
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	4 cut(s)	156, 176, 690, 1082
StyD4I	CCNGG	4 cut(s)	19, 42, 85, 576
StyI	CCWWGG	3 cut(s)	175, 231, 1300
TaaI	ACNGT	3 cut(s)	163, 1129, 1141
TaqI	TCGA	4 cut(s)	213, 279, 641, 1002
TasI	AATT	2 cut(s)	483, 505
TatI	WGTACW	2 cut(s)	183, 1044
TfiI	GAWTC	2 cut(s)	138, 825
Tru1I	TTAA	2 cut(s)	333, 1293
Tru9I	TTAA	2 cut(s)	333, 1293
TscAI	CASTG	2 cut(s)	166, 624
TseFI	GTSAC	2 cut(s)	916, 1204
TseI	GCWGC	2 cut(s)	7, 1232
Tsp45I	GTSAC	2 cut(s)	916, 1204
TspDTI	ATGAA	5 cut(s)	65, 130, 239, 626, 827
TspRI	CASTG	2 cut(s)	166, 624
Van91I	CCANNNNNTGG	1 cut(s)	986
VpaK11BI	GGWCC	3 cut(s)	25, 376, 977
VspI	ATTAAT	1 cut(s)	1293
XceI	RCATGY	1 cut(s)	607
XmaJI	CCTAGG	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	185, 953
XspI	CTAG	4 cut(s)	156, 176, 690, 1082
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.