MD01G1072900.v1.1

Delta(8)-fatty-acid desaturase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
17805153 .. 17807730
2578 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1072900.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGTCCGGCCAGGACGTCACTGATGGATTCATTGCCTACCATCCTCCGTCCGCATGGAAGTACCTGGGAAAGTTCTTCACTGGGTACCATCTGAAAGATTTCGAGATCTCGGAGGTCTCCAAGGATTACAGGAAGCTTGCTTCCGAGTTTAACCAGCTCGGTTTGTTCGAAAACAAAGGGCATGTGGCTCTTTACTCTGTGATTAGTATTCTGGTTATGCTTTACCTTGTTGTGTATGGTGTGTTGAAGTCTGAGAGTGTGTTGGTTCATTTTGGTTGCGGTTGTTTGTTGGGGGTCCTCTGGGTTCAGGGTGCCTATATAGGGCATGACTCTGGGCATTACCAGGTTATGTCGAGCCGCAGGTACAACAAAATGGCACAATTTCTGGCCGGAAATTGCCTGACTGGGATCAGCATTGCTTGGTGGAAATGGACTCACAATGCCCACCACATTGCCTGCAACAGCCTTGACTATGATCCCGATCTTCAGCACATGCCGGTGTTTGCTGTGTCCACGAAATTCTTTCATTCAATAACGTCAACCTTTTATGGAAGAGAGCTGACATTTGATGCTGTGGCTAGATTTTTAGTCAGCCACCAGCATTTTACATATTACCCGATCATGATTGTTGGAAGGGTTAACTTGTTTATTCAGACGTTCTTGCTACTGTTCTCCAAGAGAAGCATCCCAGATAGAGCTTTGAACATAATGGGAATCCTTGTTTTCTGGACTTGGTTTCCTCTCCTTGTTTCGTGTCTGCCTAATTGGAGGGAGAGGTTTATGTTTGTGTTGGCGAGCTTTGCAGTGACAGCACTTCAGCACATTCAGTTCACTTTGAACCATTTCACAGGAGATACTTATCTTGGACCACCAACTGGGAACGATTGGTTCGAGAAGCAGACAGCTGGTACTGTGGATATTTCGTGCTCGAGTTGGATGGACTGGTTCTATGGTGGCCTGCAGTTTCAACTTGAGCATCATTTGTTCCCCCGATTACCCCGTTCCCAGCTGAGGAAGATTTCTCCCACTGTGAAGGAACTATGCAAGAAGCACAATTTGCCTTACAAGAGTTTGTCCTTCTTGGATGCCAATGTGGCCACCATTAGGCTGCTAAGGAATGCTGCCCAGCAGGCTTGGGACATGGCCCTTCCCGTCCCGAAGAACTTGGCCTGGGAAGCTGTTAATACCCATGGCTGA

Protein Analysis

399

Amino Acids

45.66

Weight (kDa)

8.83

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 88 - 357 1.2e-34 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 351
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 2 cut(s) 84, 311
AccB7I CCANNNNNTGG 1 cut(s) 875
AciI CCGC 3 cut(s) 51, 279, 358
AclWI GGATC 2 cut(s) 416, 470
AcoI YGGCCR 3 cut(s) 7, 387, 1095
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 2 cut(s) 470, 800
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 4 cut(s) 62, 86, 365, 910
AfiI CCNNNNNNNGG 4 cut(s) 321, 875, 1011, 1104
AgsI TTSAA 5 cut(s) 247, 531, 703, 838, 968
AjnI CCWGG 4 cut(s) 9, 63, 342, 1169
AluBI AGCT 8 cut(s) 136, 157, 559, 698, 798, 905, 1009, 1178
AluI AGCT 8 cut(s) 136, 157, 559, 698, 798, 905, 1009, 1178
Alw21I GWGCWC 1 cut(s) 929
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 2 cut(s) 416, 470
Ama87I CYCGRG 1 cut(s) 928
AoxI GGCC 6 cut(s) 7, 387, 955, 1095, 1143, 1167
ApeKI GCWGC 2 cut(s) 1108, 1121
ApoI RAATTY 1 cut(s) 518
Asp700I GAANNNNTTC 2 cut(s) 98, 842
Asp718I GGTACC 1 cut(s) 84
AspS9I GGNCC 3 cut(s) 295, 866, 1144
AsuII TTCGAA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 928
AvaII GGWCC 2 cut(s) 295, 866
BalI TGGCCA 1 cut(s) 1097
BanI GGYRCC 2 cut(s) 84, 311
Bbv12I GWGCWC 1 cut(s) 929
BbvCI CCTCAGC 1 cut(s) 1010
BbvI GCAGC 2 cut(s) 1095, 1108
BccI CCATC 4 cut(s) 17, 48, 96, 931
BciT130I CCWGG 4 cut(s) 11, 65, 344, 1171
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 959
BfuAI ACCTGC 1 cut(s) 351
BglI GCCNNNNNGGC 2 cut(s) 1094, 1130
BglII AGATCT 1 cut(s) 105
BisI GCNGC 3 cut(s) 358, 1109, 1122
BlsI GCNGC 3 cut(s) 359, 1110, 1123
Bme1390I CCNGG 4 cut(s) 11, 65, 344, 1171
Bme18I GGWCC 2 cut(s) 295, 866
BmeT110I CYCGRG 1 cut(s) 928
BmgT120I GGNCC 3 cut(s) 295, 866, 1144
BmiI GGNNCC 3 cut(s) 86, 296, 313
BmrFI CCNGG 4 cut(s) 11, 65, 344, 1171
BmrI ACTGGG 3 cut(s) 90, 414, 885
BmsI GCATC 4 cut(s) 559, 693, 985, 1075
BmuI ACTGGG 3 cut(s) 90, 414, 885
Bpu10I CCTNAGC 2 cut(s) 1010, 1112
Bpu14I TTCGAA 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 992
BsaBI GATNNNNATC 2 cut(s) 480, 858
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 4 cut(s) 64, 120, 1170, 1189
Bsc4I CCNNNNNNNGG 4 cut(s) 321, 875, 1011, 1104
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 4 cut(s) 85, 409, 880, 947
Bse3DI GCAATG 3 cut(s) 30, 414, 450
Bse8I GATNNNNATC 2 cut(s) 480, 858
BseBI CCWGG 4 cut(s) 11, 65, 344, 1171
BseDI CCNNGG 4 cut(s) 64, 120, 1170, 1189
BseGI GGATG 4 cut(s) 40, 684, 942, 1090
BseJI GATNNNNATC 2 cut(s) 480, 858
BseLI CCNNNNNNNGG 4 cut(s) 321, 875, 1011, 1104
BseMI GCAATG 3 cut(s) 30, 414, 450
BseMII CTCAG 2 cut(s) 243, 1001
BseNI ACTGG 4 cut(s) 85, 409, 880, 947
BseXI GCAGC 2 cut(s) 1095, 1108
BseYI CCCAGC 2 cut(s) 1005, 1125
BshFI GGCC 6 cut(s) 9, 389, 957, 1097, 1145, 1169
BshNI GGYRCC 2 cut(s) 84, 311
BsiHKAI GWGCWC 1 cut(s) 929
BsiHKCI CYCGRG 1 cut(s) 928
BsiSI CCGG 3 cut(s) 6, 390, 497
BslFI GGGAC 2 cut(s) 1139, 1151
BslI CCNNNNNNNGG 4 cut(s) 321, 875, 1011, 1104
BsmAI GTCTC 1 cut(s) 121
BsmFI GGGAC 2 cut(s) 1139, 1151
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 6 cut(s) 9, 389, 957, 1097, 1145, 1169
Bso31I GGTCTC 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 928
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 929
Bsp143I GATC 5 cut(s) 105, 408, 475, 481, 618
Bsp19I CCATGG 1 cut(s) 1189
BspACI CCGC 3 cut(s) 51, 279, 358
BspANI GGCC 6 cut(s) 9, 389, 957, 1097, 1145, 1169
BspCNI CTCAG 2 cut(s) 244, 1002
BspHI TCATGA 1 cut(s) 621
BspLI GGNNCC 3 cut(s) 86, 296, 313
BspMAI CTGCAG 1 cut(s) 963
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 2 cut(s) 416, 470
BspT104I TTCGAA 1 cut(s) 168
BspT107I GGYRCC 2 cut(s) 84, 311
BspTNI GGTCTC 1 cut(s) 121
BsrDI GCAATG 3 cut(s) 30, 414, 450
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 4 cut(s) 85, 409, 880, 947
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 4 cut(s) 64, 120, 1170, 1189
BssMI GATC 5 cut(s) 105, 408, 475, 481, 618
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 120, 1189
Bst2UI CCWGG 4 cut(s) 11, 65, 344, 1171
Bst4CI ACNGT 3 cut(s) 669, 913, 1030
Bst6I CTCTTC 1 cut(s) 547
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 1057
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 5 cut(s) 138, 457, 796, 959, 1131
BstDEI CTNAG 3 cut(s) 252, 1010, 1112
BstDSI CCRYGG 1 cut(s) 1189
BstF5I GGATG 4 cut(s) 40, 684, 942, 1090
BstKTI GATC 5 cut(s) 108, 411, 478, 484, 621
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 5 cut(s) 105, 408, 475, 481, 618
BstMWI GCNNNNNNNGC 6 cut(s) 800, 809, 1057, 1094, 1130, 1175
BstNI CCWGG 4 cut(s) 11, 65, 344, 1171
BstNSI RCATGY 2 cut(s) 185, 496
BstSCI CCNGG 4 cut(s) 9, 63, 342, 1169
BstSFI CTRYAG 1 cut(s) 959
BstV1I GCAGC 2 cut(s) 1095, 1108
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 6 cut(s) 9, 389, 957, 1097, 1145, 1169
BtgI CCRYGG 1 cut(s) 1189
BtsCI GGATG 4 cut(s) 40, 684, 942, 1090
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 4 cut(s) 18, 78, 810, 1026
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 5 cut(s) 138, 457, 796, 959, 1131
CciI TCATGA 1 cut(s) 621
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 3 cut(s) 295, 866, 1144
CsiI ACCWGGT 1 cut(s) 342
Csp6I GTAC 4 cut(s) 61, 85, 364, 909
CviAII CATG 7 cut(s) 54, 182, 326, 493, 622, 1141, 1190
CviQI GTAC 4 cut(s) 61, 85, 364, 909
DdeI CTNAG 3 cut(s) 252, 1010, 1112
DpnI GATC 5 cut(s) 107, 410, 477, 483, 620
DpnII GATC 5 cut(s) 105, 408, 475, 481, 618
EaeI YGGCCR 3 cut(s) 7, 387, 1095
Eam1104I CTCTTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 547
Eco130I CCWWGG 2 cut(s) 120, 1189
Eco31I GGTCTC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 295, 866
Eco57I CTGAAG 2 cut(s) 470, 800
Eco88I CYCGRG 1 cut(s) 928
EcoO109I RGGNCCY 1 cut(s) 295
EcoRII CCWGG 4 cut(s) 9, 63, 342, 1169
EcoT14I CCWWGG 2 cut(s) 120, 1189
ErhI CCWWGG 2 cut(s) 120, 1189
FaeI CATG 7 cut(s) 57, 185, 329, 496, 625, 1144, 1193
FaqI GGGAC 2 cut(s) 1139, 1151
FatI CATG 7 cut(s) 53, 181, 325, 492, 621, 1140, 1189
Fnu4HI GCNGC 3 cut(s) 358, 1109, 1122
FokI GGATG 4 cut(s) 27, 671, 949, 1097
Fsp4HI GCNGC 3 cut(s) 358, 1109, 1122
FspBI CTAG 1 cut(s) 579
GluI GCNGC 3 cut(s) 358, 1109, 1122
GsaI CCCAGC 2 cut(s) 1009, 1129
HaeIII GGCC 6 cut(s) 9, 389, 957, 1097, 1145, 1169
HapII CCGG 3 cut(s) 6, 390, 497
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 7 cut(s) 57, 185, 329, 496, 625, 1144, 1193
HincII GTYRAC 2 cut(s) 540, 640
HindII GTYRAC 2 cut(s) 540, 640
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 4 cut(s) 27, 329, 433, 714
HpaI GTTAAC 1 cut(s) 640
HpaII CCGG 3 cut(s) 6, 390, 497
Hpy166II GTNNAC 4 cut(s) 513, 540, 640, 831
Hpy188I TCNGA 5 cut(s) 93, 112, 145, 253, 654
Hpy188III TCNNGA 6 cut(s) 103, 479, 622, 727, 892, 1156
Hpy8I GTNNAC 4 cut(s) 513, 540, 640, 831
HpyAV CCTTC 4 cut(s) 627, 1027, 1087, 1157
HpyCH4III ACNGT 3 cut(s) 669, 913, 1030
HpyCH4IV ACGT 3 cut(s) 15, 536, 656
HpyCH4V TGCA 4 cut(s) 459, 803, 961, 1044
HpyF10VI GCNNNNNNNGC 6 cut(s) 800, 809, 1057, 1094, 1130, 1175
HpyF3I CTNAG 3 cut(s) 252, 1010, 1112
HpySE526I ACGT 3 cut(s) 15, 536, 656
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 7 cut(s) 57, 185, 329, 496, 625, 1144, 1193
KpnI GGTACC 1 cut(s) 88
KspAI GTTAAC 1 cut(s) 640
Kzo9I GATC 5 cut(s) 105, 408, 475, 481, 618
Lsp1109I GCAGC 2 cut(s) 1095, 1108
LweI GCATC 4 cut(s) 559, 693, 985, 1075
MabI ACCWGGT 1 cut(s) 342
MaeI CTAG 1 cut(s) 579
MaeII ACGT 3 cut(s) 15, 536, 656
MaeIII GTNAC 2 cut(s) 16, 805
MalI GATC 5 cut(s) 107, 410, 477, 483, 620
MboI GATC 5 cut(s) 105, 408, 475, 481, 618
MboII GAAGA 5 cut(s) 67, 476, 564, 1027, 1171
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 929
MlsI TGGCCA 1 cut(s) 1097
MluCI AATT 5 cut(s) 380, 394, 518, 763, 1054
MluNI TGGCCA 1 cut(s) 1097
MlyI GAGTC 2 cut(s) 323, 427
MmeI TCCRAC 2 cut(s) 610, 914
MnlI CCTC 7 cut(s) 54, 106, 308, 750, 762, 768, 1005
Mox20I TGGCCA 1 cut(s) 1097
MroXI GAANNNNTTC 2 cut(s) 98, 842
MscI TGGCCA 1 cut(s) 1097
MseI TTAA 3 cut(s) 150, 639, 1182
MslI CAYNNNNRTG 1 cut(s) 497
Msp20I TGGCCA 1 cut(s) 1097
MspA1I CMGCKG 2 cut(s) 905, 1009
MspI CCGG 3 cut(s) 6, 390, 497
MspR9I CCNGG 4 cut(s) 11, 65, 344, 1171
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 4 cut(s) 11, 65, 344, 1171
MwoI GCNNNNNNNGC 6 cut(s) 800, 809, 1057, 1094, 1130, 1175
NcoI CCATGG 1 cut(s) 1189
NdeII GATC 5 cut(s) 105, 408, 475, 481, 618
NlaIII CATG 7 cut(s) 57, 185, 329, 496, 625, 1144, 1193
NlaIV GGNNCC 3 cut(s) 86, 296, 313
NmuCI GTSAC 2 cut(s) 16, 805
NspI RCATGY 2 cut(s) 185, 496
NspV TTCGAA 1 cut(s) 168
PaeR7I CTCGAG 1 cut(s) 928
PagI TCATGA 1 cut(s) 621
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 888
PctI GAATGC 1 cut(s) 1123
PdmI GAANNNNTTC 2 cut(s) 98, 842
PfeI GAWTC 2 cut(s) 27, 714
PflMI CCANNNNNTGG 1 cut(s) 875
PkrI GCNGC 3 cut(s) 359, 1110, 1123
PleI GAGTC 2 cut(s) 323, 427
PpsI GAGTC 2 cut(s) 323, 427
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 4 cut(s) 9, 63, 342, 1169
PspFI CCCAGC 2 cut(s) 1005, 1125
PspGI CCWGG 4 cut(s) 9, 63, 342, 1169
PspN4I GGNNCC 3 cut(s) 86, 296, 313
PspPI GGNCC 3 cut(s) 295, 866, 1144
PspPPI RGGWCCY 1 cut(s) 295
PspXI VCTCGAGB 1 cut(s) 928
PstI CTGCAG 1 cut(s) 963
PsuI RGATCY 1 cut(s) 105
PvuII CAGCTG 2 cut(s) 905, 1009
RsaI GTAC 4 cut(s) 62, 86, 365, 910
RsaNI GTAC 4 cut(s) 61, 85, 364, 909
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 3 cut(s) 150, 639, 1182
SatI GCNGC 3 cut(s) 358, 1109, 1122
Sau3AI GATC 5 cut(s) 105, 408, 475, 481, 618
Sau96I GGNCC 3 cut(s) 295, 866, 1144
SchI GAGTC 2 cut(s) 323, 427
ScrFI CCNGG 4 cut(s) 11, 65, 344, 1171
SduI GDGCHC 1 cut(s) 929
SexAI ACCWGGT 1 cut(s) 342
SfaNI GCATC 4 cut(s) 559, 693, 985, 1075
SfcI CTRYAG 1 cut(s) 959
Sfr274I CTCGAG 1 cut(s) 928
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 2 cut(s) 295, 866
SlaI CTCGAG 1 cut(s) 928
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 928, 971
SmoI CTYRAG 2 cut(s) 928, 971
Sse9I AATT 5 cut(s) 380, 394, 518, 763, 1054
SsiI CCGC 3 cut(s) 51, 279, 358
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 4 cut(s) 9, 63, 342, 1169
StyI CCWWGG 2 cut(s) 120, 1189
TaaI ACNGT 3 cut(s) 669, 913, 1030
TaiI ACGT 3 cut(s) 18, 539, 659
TaqI TCGA 5 cut(s) 102, 168, 353, 891, 929
TasI AATT 5 cut(s) 380, 394, 518, 763, 1054
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 2 cut(s) 27, 714
Tru1I TTAA 3 cut(s) 150, 639, 1182
Tru9I TTAA 3 cut(s) 150, 639, 1182
TscAI CASTG 4 cut(s) 25, 85, 810, 1033
TseFI GTSAC 2 cut(s) 16, 805
TseI GCWGC 2 cut(s) 1108, 1121
Tsp45I GTSAC 2 cut(s) 16, 805
TspDTI ATGAA 3 cut(s) 19, 257, 515
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 4 cut(s) 25, 85, 810, 1033
Van91I CCANNNNNTGG 1 cut(s) 875
VpaK11BI GGWCC 2 cut(s) 295, 866
XapI RAATTY 1 cut(s) 518
XceI RCATGY 2 cut(s) 185, 496
XhoI CTCGAG 1 cut(s) 928
XmnI GAANNNNTTC 2 cut(s) 98, 842
XspI CTAG 1 cut(s) 579
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.