FvH4_7g15570

Delta(8)-fatty-acid desaturase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
13452909 .. 13455326
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15570.t1

Sequence Viewer

Length: 1350 bp
ATGGAAATGGAGAAGAATCGGAAGTACATCACGACGGAGGAGCTGAGATTACACAACAAGCCTGACGATTTATGGATCTCTATCCAGGGGAAGGCGTATAATGTCACCGACTGGGTGAAGGACCACCCGGGTGGAGCTGAGCCTCTGATGAATCTGGCAGGGCAGGACGTGACGGACGCGTTCATTGCTTATCATCCCGGCACGGCTTGGGCTTACCTGGACAAGTTGTTCACCGGGTATTACGTCAGAGATTTCAAGGTGTCTGATGTGTCGAGGGATTACCGGAAGTTGTATTCCGAGTTTCTGAAGATGGGGCTTTTTGAGAAGAAGGGGCATGTGCAGCTGTATAATATGGCGAGCGTGGCGGTGATGCTGGGGATGGTTGTGTATGGGGTGGTGAGATCTGAGAGTAGTTTGGTGCATATGGGGTGTGGGTTTTTGTTGGGTTTGTTGTGGATTGTTGCGGCGTATATGGGTCATGATTCAGGGCATTATGTGGTGATGAAGAGCGAGTTTTGGAACAGTGTGACACAGATTCTGGCGGGGAATTGCGTTACGGGGATCAGCATTGCTTGGTGGAAGTGGACTCATAATGCGCATCATATTGCTTGCAACAGTTTGGATTATGACCCTGATCTGCAGCACGTTCCGGTGTTTGCTGTGTCCACAAAGTTCTTTCATTCGCTGACTTCGGTGTTTTATGGGAGGGAGCTGACGTTTGATGGCGTGGCGAGGTTTTTGATTGGGTACCAGCATTTTACTTACTATCCGGTGATGATTTTCGGGCGGATTAATCTGTTTATACAGACGTTTTTGTTGCTGTTCTCCAAGAGGCCTGTGCCGAATAGGTTGAAGAACATATTTGGGATCCTTGTGTTCTGGACTTGGTTTCCTCTGTTGGTTTCGTGCCTACCGAATTGGGGGGAGAGGGTGATGTTTGTGCTGATTGCGTTTGCGGTCACGGCTCTGCAGCATGTTCAGTTCACATTGAACCATTTCTCTGGGGATACATATGTTGGGCCTCCCAAGGGGAATGATTGGTTTGAGAAGCAGACAGCTGGGACTATTGACATTTCGTGTTCGAGTTATATGGATTGGCTCTTTGGTGGGTTGCAGTTTCAGCTTGAGCACCATTTGTTCCCCAGGTTGCCTCGCTGCCAATTGAGGAAGGTTTCGCCCATCATTCAAGAGCTGTGCAAGAAGCACAGTTTGCCTTACAGGAGCTTGTCATTCTGGGAAGCCAATGTGTCCACCATTAGAACTCTTAGGACTGCTGCCCTGCAGGCTAGGGACCTGACCAACCCTGTTCCAAAGAACTTGGTCTGGGAGGCTCTTAACACCCATGGTTGA

Protein Analysis

450

Amino Acids

51.64

Weight (kDa)

8.66

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 11 - 81 9.9e-24 Cytochrome b5-like Heme/Steroid binding domain
FA_desaturase PF00487 139 - 409 1.3e-32 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 597
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 747
AccII CGCG 1 cut(s) 179
AciI CCGC 5 cut(s) 365, 464, 542, 787, 956
AclWI GGATC 4 cut(s) 83, 569, 862, 875
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 2 cut(s) 26, 749
AfiI CCNNNNNNNGG 3 cut(s) 91, 920, 1028
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 4 cut(s) 256, 853, 991, 1187
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 3 cut(s) 84, 216, 1142
AleI CACNNNNGTG 1 cut(s) 129
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 8 cut(s) 43, 137, 343, 712, 1058, 1123, 1192, 1224
AluI AGCT 8 cut(s) 43, 137, 343, 712, 1058, 1123, 1192, 1224
Alw21I GWGCWC 1 cut(s) 1131
AlwI GGATC 4 cut(s) 83, 569, 862, 875
AlwNI CAGNNNCTG 1 cut(s) 538
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 2 cut(s) 833, 1019
ApeKI GCWGC 5 cut(s) 340, 640, 970, 1155, 1274
AseI ATTAAT 1 cut(s) 792
Asp700I GAANNNNTTC 1 cut(s) 995
Asp718I GGTACC 1 cut(s) 747
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 3 cut(s) 121, 1019, 1291
AsuC2I CCSGG 4 cut(s) 128, 129, 198, 235
AsuHPI GGTGA 8 cut(s) 97, 127, 223, 379, 409, 511, 784, 943
AvaI CYCGRG 1 cut(s) 127
AvaII GGWCC 2 cut(s) 121, 1291
BaeI ACNNNNGTAYC 2 cut(s) 999, 1032
BamHI GGATCC 1 cut(s) 867
BanI GGYRCC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 1131
BbvI GCAGC 5 cut(s) 352, 652, 982, 1142, 1261
BccI CCATC 4 cut(s) 304, 373, 716, 1187
BceAI ACGGC 2 cut(s) 219, 978
BciT130I CCWGG 3 cut(s) 86, 218, 1144
BciVI GTATCC 1 cut(s) 1000
BcnI CCSGG 4 cut(s) 128, 129, 198, 235
BfaI CTAG 1 cut(s) 1287
BfmI CTRYAG 3 cut(s) 638, 968, 1280
BfuI GTATCC 1 cut(s) 1000
BglI GCCNNNNNGGC 1 cut(s) 1283
BglII AGATCT 1 cut(s) 401
BisI GCNGC 6 cut(s) 341, 465, 641, 971, 1156, 1275
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 6 cut(s) 342, 466, 642, 972, 1157, 1276
Bme1390I CCNGG 7 cut(s) 86, 128, 129, 198, 218, 235, 1144
Bme18I GGWCC 2 cut(s) 121, 1291
BmeT110I CYCGRG 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 3 cut(s) 121, 1019, 1291
BmiI GGNNCC 3 cut(s) 749, 869, 1292
BmrFI CCNGG 7 cut(s) 86, 128, 129, 198, 218, 235, 1144
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 2 cut(s) 360, 607
BmuI ACTGGG 1 cut(s) 121
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 1145
BpuMI CCSGG 4 cut(s) 128, 129, 198, 235
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 5 cut(s) 85, 127, 1026, 1142, 1342
BsaWI WCCGGW 3 cut(s) 282, 649, 769
BsaXI ACNNNNNCTCC 2 cut(s) 701, 731
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 920, 1028
Bse1I ACTGG 1 cut(s) 116
Bse3DI GCAATG 2 cut(s) 183, 567
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 3 cut(s) 86, 218, 1144
BseDI CCNNGG 5 cut(s) 85, 127, 1026, 1142, 1342
BseGI GGATG 2 cut(s) 193, 384
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 3 cut(s) 91, 920, 1028
BseMI GCAATG 2 cut(s) 183, 567
BseMII CTCAG 3 cut(s) 35, 129, 396
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 5 cut(s) 352, 652, 982, 1142, 1261
BseYI CCCAGC 2 cut(s) 373, 1058
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 2 cut(s) 835, 1021
BshNI GGYRCC 1 cut(s) 747
BsiHKAI GWGCWC 1 cut(s) 1131
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 6 cut(s) 128, 198, 234, 283, 650, 770
BslFI GGGAC 2 cut(s) 1075, 1304
BslI CCNNNNNNNGG 3 cut(s) 91, 920, 1028
BsmFI GGGAC 2 cut(s) 1075, 1304
BsnI GGCC 2 cut(s) 835, 1021
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 1131
Bsp143I GATC 5 cut(s) 75, 401, 561, 634, 867
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 1342
BspACI CCGC 5 cut(s) 365, 464, 542, 787, 956
BspANI GGCC 2 cut(s) 835, 1021
BspCNI CTCAG 3 cut(s) 36, 130, 397
BspFNI CGCG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 749, 869, 1292
BspMAI CTGCAG 3 cut(s) 642, 972, 1284
BspPI GGATC 4 cut(s) 83, 569, 862, 875
BspQI GCTCTTC 1 cut(s) 500
BspT107I GGYRCC 1 cut(s) 747
BsrDI GCAATG 2 cut(s) 183, 567
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 5 cut(s) 85, 127, 1026, 1142, 1342
BssMI GATC 5 cut(s) 75, 401, 561, 634, 867
BssT1I CCWWGG 2 cut(s) 1026, 1342
Bst2UI CCWGG 3 cut(s) 86, 218, 1144
Bst4CI ACNGT 3 cut(s) 524, 617, 1208
Bst6I CTCTTC 1 cut(s) 500
BstAPI GCANNNNNTGC 1 cut(s) 1210
BstC8I GCNNGC 3 cut(s) 358, 610, 1284
BstDEI CTNAG 4 cut(s) 44, 138, 405, 1265
BstDSI CCRYGG 1 cut(s) 1342
BstF5I GGATG 2 cut(s) 193, 384
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 5 cut(s) 78, 404, 564, 637, 870
BstMBI GATC 5 cut(s) 75, 401, 561, 634, 867
BstMWI GCNNNNNNNGC 7 cut(s) 185, 340, 362, 962, 1120, 1210, 1283
BstNI CCWGG 3 cut(s) 86, 218, 1144
BstNSI RCATGY 2 cut(s) 338, 977
BstSCI CCNGG 7 cut(s) 84, 126, 127, 196, 216, 233, 1142
BstSFI CTRYAG 3 cut(s) 638, 968, 1280
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 5 cut(s) 352, 652, 982, 1142, 1261
BstX2I RGATCY 3 cut(s) 75, 401, 867
BstXI CCANNNNNNTGG 2 cut(s) 131, 1001
BstYI RGATCY 3 cut(s) 75, 401, 867
BsuI GTATCC 1 cut(s) 1000
BsuRI GGCC 2 cut(s) 835, 1021
BtgI CCRYGG 1 cut(s) 1342
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 193, 384
BtsIMutI CAGTG 1 cut(s) 529
Cac8I GCNNGC 3 cut(s) 358, 610, 1284
CaiI CAGNNNCTG 1 cut(s) 538
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 3 cut(s) 121, 1019, 1291
Cfr9I CCCGGG 1 cut(s) 127
CseI GACGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 25, 748
CviAII CATG 4 cut(s) 335, 479, 974, 1343
CviQI GTAC 2 cut(s) 25, 748
DdeI CTNAG 4 cut(s) 44, 138, 405, 1265
DpnI GATC 5 cut(s) 77, 403, 563, 636, 869
DpnII GATC 5 cut(s) 75, 401, 561, 634, 867
Eam1104I CTCTTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 500
EciI GGCGGA 1 cut(s) 802
Eco130I CCWWGG 2 cut(s) 1026, 1342
Eco147I AGGCCT 1 cut(s) 835
Eco47I GGWCC 2 cut(s) 121, 1291
Eco57I CTGAAG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 1291
EcoRII CCWGG 3 cut(s) 84, 216, 1142
EcoT14I CCWWGG 2 cut(s) 1026, 1342
ErhI CCWWGG 2 cut(s) 1026, 1342
FaeI CATG 4 cut(s) 338, 482, 977, 1346
FaqI GGGAC 2 cut(s) 1075, 1304
FatI CATG 4 cut(s) 334, 478, 973, 1342
FauI CCCGC 1 cut(s) 535
FauNDI CATATG 2 cut(s) 423, 1012
Fnu4HI GCNGC 6 cut(s) 341, 465, 641, 971, 1156, 1275
FokI GGATG 2 cut(s) 180, 391
Fsp4HI GCNGC 6 cut(s) 341, 465, 641, 971, 1156, 1275
FspAI RTGCGCAY 1 cut(s) 597
FspBI CTAG 1 cut(s) 1287
FspI TGCGCA 1 cut(s) 597
GlaI GCGC 1 cut(s) 597
GluI GCNGC 6 cut(s) 341, 465, 641, 971, 1156, 1275
GsaI CCCAGC 2 cut(s) 377, 1062
HaeIII GGCC 2 cut(s) 835, 1021
HapII CCGG 6 cut(s) 128, 198, 234, 283, 650, 770
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 598
Hin1II CATG 4 cut(s) 338, 482, 977, 1346
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HinfI GANTC 5 cut(s) 16, 151, 482, 535, 586
HpaII CCGG 6 cut(s) 128, 198, 234, 283, 650, 770
HphI GGTGA 8 cut(s) 97, 127, 223, 379, 409, 511, 784, 943
Hpy166II GTNNAC 5 cut(s) 231, 585, 666, 984, 1251
Hpy188I TCNGA 7 cut(s) 21, 147, 248, 265, 298, 306, 406
Hpy188III TCNNGA 4 cut(s) 31, 479, 880, 1187
Hpy8I GTNNAC 5 cut(s) 231, 585, 666, 984, 1251
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 4 cut(s) 85, 112, 322, 1162
HpyCH4III ACNGT 3 cut(s) 524, 617, 1208
HpyCH4IV ACGT 5 cut(s) 168, 243, 645, 716, 809
HpyCH4V TGCA 8 cut(s) 340, 421, 612, 640, 970, 1114, 1197, 1282
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 340, 362, 962, 1120, 1210, 1283
HpyF3I CTNAG 4 cut(s) 44, 138, 405, 1265
HpySE526I ACGT 5 cut(s) 168, 243, 645, 716, 809
Hsp92II CATG 4 cut(s) 338, 482, 977, 1346
HspAI GCGC 1 cut(s) 596
KpnI GGTACC 1 cut(s) 751
Kzo9I GATC 5 cut(s) 75, 401, 561, 634, 867
LguI GCTCTTC 1 cut(s) 500
LmnI GCTCC 4 cut(s) 40, 134, 709, 1221
Lsp1109I GCAGC 5 cut(s) 352, 652, 982, 1142, 1261
LweI GCATC 2 cut(s) 360, 607
MaeI CTAG 1 cut(s) 1287
MaeII ACGT 5 cut(s) 168, 243, 645, 716, 809
MaeIII GTNAC 5 cut(s) 103, 169, 526, 553, 958
MalI GATC 5 cut(s) 77, 403, 563, 636, 869
MboI GATC 5 cut(s) 75, 401, 561, 634, 867
MboII GAAGA 5 cut(s) 25, 319, 337, 517, 865
MfeI CAATTG 1 cut(s) 1160
MflI RGATCY 3 cut(s) 75, 401, 867
MhlI GDGCHC 1 cut(s) 1131
MluCI AATT 3 cut(s) 547, 916, 1160
MluI ACGCGT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 580
MroXI GAANNNNTTC 1 cut(s) 995
MseI TTAA 2 cut(s) 792, 1335
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 2 cut(s) 343, 1058
MspI CCGG 6 cut(s) 128, 198, 234, 283, 650, 770
MspR9I CCNGG 7 cut(s) 86, 128, 129, 198, 218, 235, 1144
MunI CAATTG 1 cut(s) 1160
MvaI CCWGG 3 cut(s) 86, 218, 1144
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 7 cut(s) 185, 340, 362, 962, 1120, 1210, 1283
NciI CCSGG 4 cut(s) 128, 129, 198, 235
NcoI CCATGG 1 cut(s) 1342
NdeI CATATG 2 cut(s) 423, 1012
NdeII GATC 5 cut(s) 75, 401, 561, 634, 867
NlaIII CATG 4 cut(s) 338, 482, 977, 1346
NlaIV GGNNCC 3 cut(s) 749, 869, 1292
NmuCI GTSAC 4 cut(s) 103, 169, 526, 958
NsbI TGCGCA 1 cut(s) 597
NspI RCATGY 2 cut(s) 338, 977
OliI CACNNNNGTG 1 cut(s) 129
PagI TCATGA 1 cut(s) 478
PceI AGGCCT 1 cut(s) 835
PciSI GCTCTTC 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 911
PdmI GAANNNNTTC 1 cut(s) 995
PfeI GAWTC 4 cut(s) 16, 151, 482, 535
PkrI GCNGC 6 cut(s) 342, 466, 642, 972, 1157, 1276
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PpuMI RGGWCCY 1 cut(s) 1291
PshBI ATTAAT 1 cut(s) 792
Psp5II RGGWCCY 1 cut(s) 1291
Psp6I CCWGG 3 cut(s) 84, 216, 1142
PspFI CCCAGC 2 cut(s) 373, 1058
PspGI CCWGG 3 cut(s) 84, 216, 1142
PspN4I GGNNCC 3 cut(s) 749, 869, 1292
PspPI GGNCC 3 cut(s) 121, 1019, 1291
PspPPI RGGWCCY 1 cut(s) 1291
PstI CTGCAG 3 cut(s) 642, 972, 1284
PstNI CAGNNNCTG 1 cut(s) 538
PsuI RGATCY 3 cut(s) 75, 401, 867
PvuII CAGCTG 2 cut(s) 343, 1058
RsaI GTAC 2 cut(s) 26, 749
RsaNI GTAC 2 cut(s) 25, 748
RseI CAYNNNNRTG 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 500
SaqAI TTAA 2 cut(s) 792, 1335
SatI GCNGC 6 cut(s) 341, 465, 641, 971, 1156, 1275
Sau3AI GATC 5 cut(s) 75, 401, 561, 634, 867
Sau96I GGNCC 3 cut(s) 121, 1019, 1291
SbfI CCTGCAGG 1 cut(s) 1284
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 7 cut(s) 86, 128, 129, 198, 218, 235, 1144
SdaI CCTGCAGG 1 cut(s) 1284
SduI GDGCHC 1 cut(s) 1131
SfaNI GCATC 2 cut(s) 360, 607
SfcI CTRYAG 3 cut(s) 638, 968, 1280
SinI GGWCC 2 cut(s) 121, 1291
SmaI CCCGGG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 1124
SmoI CTYRAG 1 cut(s) 1124
Sse8387I CCTGCAGG 1 cut(s) 1284
Sse9I AATT 3 cut(s) 547, 916, 1160
SseBI AGGCCT 1 cut(s) 835
SsiI CCGC 5 cut(s) 365, 464, 542, 787, 956
SspMI CTAG 1 cut(s) 1287
StuI AGGCCT 1 cut(s) 835
StyD4I CCNGG 7 cut(s) 84, 126, 127, 196, 216, 233, 1142
StyI CCWWGG 2 cut(s) 1026, 1342
TaaI ACNGT 3 cut(s) 524, 617, 1208
TaiI ACGT 5 cut(s) 171, 246, 648, 719, 812
TaqI TCGA 2 cut(s) 272, 1082
TasI AATT 3 cut(s) 547, 916, 1160
TatI WGTACW 1 cut(s) 24
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 4 cut(s) 16, 151, 482, 535
Tru1I TTAA 2 cut(s) 792, 1335
Tru9I TTAA 2 cut(s) 792, 1335
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 4 cut(s) 103, 169, 526, 958
TseI GCWGC 5 cut(s) 340, 640, 970, 1155, 1274
Tsp45I GTSAC 4 cut(s) 103, 169, 526, 958
TspDTI ATGAA 4 cut(s) 164, 172, 518, 668
TspGWI ACGGA 2 cut(s) 50, 188
TspMI CCCGGG 1 cut(s) 127
TspRI CASTG 1 cut(s) 529
VpaK11BI GGWCC 2 cut(s) 121, 1291
VspI ATTAAT 1 cut(s) 792
XceI RCATGY 2 cut(s) 338, 977
XmaI CCCGGG 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 995
XspI CTAG 1 cut(s) 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.