MD07G1130000.v1.1

Delta(8)-fatty-acid desaturase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
18569940 .. 18572700
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1130000.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGTCCGGCCAGGACGTTACTGATGGATTCATTGCCTACCATCCTCCATCAGCATGGAAGTACCTGGGAAAGTTCTTCACTGGGTACTATCTGAAAGATTTCGAGATCTCCGAGGTCTCCAAGGATTACAGGAAGCTTGCTTCTGAGTTTAACCAGCTCGGCTTGTTTGAAAACAAAGGGCATGGGGCCCTTTACTCCGTGATTAGTATTCTGGCTATGCTTTACCTTGTTGTGTATGGTGTGTTGAAGTCTGAGAGTGTGTTGGTTCATTTCGGTTGCGGTTGTTTGTTGGGGGTCCTCTGGGTTCAGGGTGCCTATATGGGTCATGACTCCGGGCATTACCAGGTCATGTCTAGCCGCAGGTACAACAAACTCGCGCAATTTCTGGCTGGGAATTGCCTTACTGGGATCAGCATTGCTTGGTGGAAATGGACCCACAATGCCCACCACATTGCCTGCAACAGCCTTGATTATGATCCTGATCTTCAACACATGCCGGTTTTTGCTGTGTCCACGAAATTCTTTCAGTCAATAACATCAACCTTTTACGGAAGAGAGCTGACGTTTGATGCCGTGGCTAGATTTTTAGTCAGCCACCAGCATTTTACGTATTATCCAATCATGATTGTTGGAAGGGTAAACTTGTTTATACAGACGTTCTTGTTATTGTTCTCGAAGAGGAGCATCCCAGATAGAGCTTTGAACATAATGGGGATCCTTGTTTTCTGGACTTGGTTTCCTCTCCTTGTTTCATGTCTGCCTAATTGGAGCGAGAGGTTTATGTTCGTGTTGGCGAGCTTTACAGTGACAGCACTTCAGCACATTCAGTTCACTTTGAACCATTTTACAGGAGATACTTATCTTGGACCACCAACTGGCAACGATTGGTTTGAGAAGCAGACAGCTGGTACCGTGGATATTTTGTGCTCAAGTTGGATGGACGGGTTCTATGGTGGCCTGCAGTTTCAGCTTGAGCATCATTTGTTCCCACGATTGCCCCGTTCCCAGCTGAGGAAGATTTCTCCCACTGTGAAGGAACTATGCAAGAAGCACAATTTACCTTACAAGAGTTTGTCCTTCTTGGATGCCAATGTGACTACCATTAGGATGCTAAGGAATGCTGCTCAGCAGGCTTGGGACATGACCCTTCCCGTCCCGAAGAACTTGGCCTGGGAAGCTGTTAATACCCATGGTTGA

Protein Analysis

399

Amino Acids

45.55

Weight (kDa)

8.7

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 88 - 357 3.4e-33 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 351
Acc65I GGTACC 1 cut(s) 908
AccB1I GGYRCC 2 cut(s) 311, 908
AccB7I CCANNNNNTGG 1 cut(s) 875
AccII CGCG 1 cut(s) 377
AciI CCGC 2 cut(s) 279, 358
AclWI GGATC 4 cut(s) 416, 470, 709, 722
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 800
AfaI GTAC 4 cut(s) 62, 86, 365, 910
AfiI CCNNNNNNNGG 2 cut(s) 875, 1011
AgsI TTSAA 5 cut(s) 170, 247, 488, 703, 838
AjnI CCWGG 4 cut(s) 9, 63, 342, 1169
AluBI AGCT 9 cut(s) 136, 157, 559, 698, 798, 905, 970, 1009, 1178
AluI AGCT 9 cut(s) 136, 157, 559, 698, 798, 905, 970, 1009, 1178
Alw21I GWGCWC 1 cut(s) 929
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 4 cut(s) 416, 470, 709, 722
AoxI GGCC 4 cut(s) 7, 186, 955, 1167
ApaI GGGCCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 1121
ApoI RAATTY 1 cut(s) 518
Asp700I GAANNNNTTC 1 cut(s) 98
Asp718I GGTACC 1 cut(s) 908
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 5 cut(s) 186, 187, 295, 432, 866
AsuC2I CCSGG 1 cut(s) 334
AvaII GGWCC 3 cut(s) 295, 432, 866
BaeGI GKGCMC 1 cut(s) 190
BamHI GGATCC 1 cut(s) 714
BanI GGYRCC 2 cut(s) 311, 908
BanII GRGCYC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 929
BbvCI CCTCAGC 1 cut(s) 1010
BbvI GCAGC 1 cut(s) 1108
BccI CCATC 4 cut(s) 17, 48, 55, 931
BceAI ACGGC 1 cut(s) 557
BciT130I CCWGG 4 cut(s) 11, 65, 344, 1171
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 2 cut(s) 354, 579
BfmI CTRYAG 1 cut(s) 959
BfuAI ACCTGC 1 cut(s) 351
BglII AGATCT 1 cut(s) 105
BisI GCNGC 2 cut(s) 358, 1122
BlpI GCTNAGC 1 cut(s) 1125
BlsI GCNGC 2 cut(s) 359, 1123
Bme1390I CCNGG 5 cut(s) 11, 65, 334, 344, 1171
Bme18I GGWCC 3 cut(s) 295, 432, 866
BmgT120I GGNCC 5 cut(s) 186, 187, 295, 432, 866
BmiI GGNNCC 7 cut(s) 187, 188, 296, 313, 434, 716, 910
BmrFI CCNGG 5 cut(s) 11, 65, 334, 344, 1171
BmrI ACTGGG 2 cut(s) 90, 414
BmsI GCATC 5 cut(s) 559, 693, 985, 1075, 1098
BmuI ACTGGG 2 cut(s) 90, 414
Bpu10I CCTNAGC 2 cut(s) 1010, 1112
Bpu1102I GCTNAGC 1 cut(s) 1125
BpuEI CTTGAG 2 cut(s) 913, 992
BpuMI CCSGG 1 cut(s) 334
BsaAI YACGTR 1 cut(s) 609
BsaBI GATNNNNATC 3 cut(s) 474, 480, 858
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 7 cut(s) 64, 111, 120, 573, 912, 1170, 1189
Bsc4I CCNNNNNNNGG 2 cut(s) 875, 1011
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 3 cut(s) 85, 409, 880
Bse3DI GCAATG 3 cut(s) 30, 414, 450
Bse8I GATNNNNATC 3 cut(s) 474, 480, 858
BseBI CCWGG 4 cut(s) 11, 65, 344, 1171
BseDI CCNNGG 7 cut(s) 64, 111, 120, 573, 912, 1170, 1189
BseGI GGATG 5 cut(s) 40, 684, 942, 1090, 1113
BseJI GATNNNNATC 3 cut(s) 474, 480, 858
BseLI CCNNNNNNNGG 2 cut(s) 875, 1011
BseMI GCAATG 3 cut(s) 30, 414, 450
BseMII CTCAG 4 cut(s) 135, 243, 1001, 1139
BseNI ACTGG 3 cut(s) 85, 409, 880
BseRI GAGGAG 1 cut(s) 694
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 1 cut(s) 1108
BseYI CCCAGC 2 cut(s) 389, 1005
Bsh1236I CGCG 1 cut(s) 377
BshFI GGCC 4 cut(s) 9, 188, 957, 1169
BshNI GGYRCC 2 cut(s) 311, 908
BsiHKAI GWGCWC 1 cut(s) 929
BsiSI CCGG 3 cut(s) 6, 333, 497
BslFI GGGAC 2 cut(s) 1139, 1151
BslI CCNNNNNNNGG 2 cut(s) 875, 1011
BsmAI GTCTC 1 cut(s) 121
BsmFI GGGAC 2 cut(s) 1139, 1151
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 4 cut(s) 9, 188, 957, 1169
Bso31I GGTCTC 1 cut(s) 121
Bsp120I GGGCCC 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 190, 929
Bsp143I GATC 5 cut(s) 105, 408, 475, 481, 714
Bsp1720I GCTNAGC 1 cut(s) 1125
Bsp19I CCATGG 1 cut(s) 1189
BspACI CCGC 2 cut(s) 279, 358
BspANI GGCC 4 cut(s) 9, 188, 957, 1169
BspCNI CTCAG 4 cut(s) 136, 244, 1002, 1138
BspFNI CGCG 1 cut(s) 377
BspHI TCATGA 2 cut(s) 325, 621
BspLI GGNNCC 7 cut(s) 187, 188, 296, 313, 434, 716, 910
BspMAI CTGCAG 1 cut(s) 963
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 4 cut(s) 416, 470, 709, 722
BspT107I GGYRCC 2 cut(s) 311, 908
BspTNI GGTCTC 1 cut(s) 121
BsrDI GCAATG 3 cut(s) 30, 414, 450
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 3 cut(s) 85, 409, 880
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 7 cut(s) 64, 111, 120, 573, 912, 1170, 1189
BssMI GATC 5 cut(s) 105, 408, 475, 481, 714
BssT1I CCWWGG 2 cut(s) 120, 1189
Bst2UI CCWGG 4 cut(s) 11, 65, 344, 1171
Bst4CI ACNGT 3 cut(s) 805, 913, 1030
Bst6I CTCTTC 2 cut(s) 547, 671
BstBAI YACGTR 1 cut(s) 609
BstC8I GCNNGC 5 cut(s) 138, 457, 796, 959, 1131
BstDEI CTNAG 5 cut(s) 144, 252, 1010, 1112, 1125
BstDSI CCRYGG 3 cut(s) 573, 912, 1189
BstF5I GGATG 5 cut(s) 40, 684, 942, 1090, 1113
BstFNI CGCG 1 cut(s) 377
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 5 cut(s) 108, 411, 478, 484, 717
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 5 cut(s) 105, 408, 475, 481, 714
BstMWI GCNNNNNNNGC 3 cut(s) 967, 1130, 1175
BstNI CCWGG 4 cut(s) 11, 65, 344, 1171
BstNSI RCATGY 1 cut(s) 496
BstSCI CCNGG 5 cut(s) 9, 63, 332, 342, 1169
BstSFI CTRYAG 1 cut(s) 959
BstSLI GKGCMC 1 cut(s) 190
BstSNI TACGTA 1 cut(s) 609
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 1108
BstX2I RGATCY 2 cut(s) 105, 714
BstXI CCANNNNNNTGG 1 cut(s) 54
BstYI RGATCY 2 cut(s) 105, 714
BsuRI GGCC 4 cut(s) 9, 188, 957, 1169
BtgI CCRYGG 3 cut(s) 573, 912, 1189
BtsCI GGATG 5 cut(s) 40, 684, 942, 1090, 1113
BtsIMutI CAGTG 3 cut(s) 78, 810, 1026
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 5 cut(s) 138, 457, 796, 959, 1131
CciI TCATGA 2 cut(s) 325, 621
CfoI GCGC 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 5 cut(s) 186, 187, 295, 432, 866
CsiI ACCWGGT 1 cut(s) 342
Csp6I GTAC 4 cut(s) 61, 85, 364, 909
CviAII CATG 9 cut(s) 54, 182, 326, 349, 493, 622, 753, 1141, 1190
CviQI GTAC 4 cut(s) 61, 85, 364, 909
DdeI CTNAG 5 cut(s) 144, 252, 1010, 1112, 1125
DpnI GATC 5 cut(s) 107, 410, 477, 483, 716
DpnII GATC 5 cut(s) 105, 408, 475, 481, 714
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 2 cut(s) 547, 671
EarI CTCTTC 2 cut(s) 547, 671
Eco105I TACGTA 1 cut(s) 609
Eco130I CCWWGG 2 cut(s) 120, 1189
Eco24I GRGCYC 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 121
Eco47I GGWCC 3 cut(s) 295, 432, 866
Eco57I CTGAAG 1 cut(s) 800
EcoO109I RGGNCCY 3 cut(s) 186, 187, 295
EcoRII CCWGG 4 cut(s) 9, 63, 342, 1169
EcoT14I CCWWGG 2 cut(s) 120, 1189
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 2 cut(s) 120, 1189
FaeI CATG 9 cut(s) 57, 185, 329, 352, 496, 625, 756, 1144, 1193
FaqI GGGAC 2 cut(s) 1139, 1151
FatI CATG 9 cut(s) 53, 181, 325, 348, 492, 621, 752, 1140, 1189
Fnu4HI GCNGC 2 cut(s) 358, 1122
FokI GGATG 5 cut(s) 27, 671, 949, 1097, 1120
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 2 cut(s) 358, 1122
FspBI CTAG 2 cut(s) 354, 579
GlaI GCGC 1 cut(s) 378
GluI GCNGC 2 cut(s) 358, 1122
GsaI CCCAGC 2 cut(s) 393, 1009
HaeIII GGCC 4 cut(s) 9, 188, 957, 1169
HapII CCGG 3 cut(s) 6, 333, 497
HhaI GCGC 1 cut(s) 379
Hin1II CATG 9 cut(s) 57, 185, 329, 352, 496, 625, 756, 1144, 1193
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 2 cut(s) 27, 329
HpaII CCGG 3 cut(s) 6, 333, 497
Hpy166II GTNNAC 3 cut(s) 513, 640, 831
Hpy188I TCNGA 4 cut(s) 93, 112, 145, 253
Hpy188III TCNNGA 7 cut(s) 103, 326, 479, 622, 673, 727, 1156
Hpy8I GTNNAC 3 cut(s) 513, 640, 831
HpyAV CCTTC 4 cut(s) 627, 1027, 1087, 1157
HpyCH4III ACNGT 3 cut(s) 805, 913, 1030
HpyCH4IV ACGT 4 cut(s) 15, 563, 608, 656
HpyCH4V TGCA 3 cut(s) 459, 961, 1044
HpyF10VI GCNNNNNNNGC 3 cut(s) 967, 1130, 1175
HpyF3I CTNAG 5 cut(s) 144, 252, 1010, 1112, 1125
HpySE526I ACGT 4 cut(s) 15, 563, 608, 656
Hsp92II CATG 9 cut(s) 57, 185, 329, 352, 496, 625, 756, 1144, 1193
HspAI GCGC 1 cut(s) 377
KpnI GGTACC 1 cut(s) 912
Kzo9I GATC 5 cut(s) 105, 408, 475, 481, 714
LmnI GCTCC 2 cut(s) 681, 768
Lsp1109I GCAGC 1 cut(s) 1108
LweI GCATC 5 cut(s) 559, 693, 985, 1075, 1098
MabI ACCWGGT 1 cut(s) 342
MaeI CTAG 2 cut(s) 354, 579
MaeII ACGT 4 cut(s) 15, 563, 608, 656
MaeIII GTNAC 3 cut(s) 16, 805, 1093
MalI GATC 5 cut(s) 107, 410, 477, 483, 716
MboI GATC 5 cut(s) 105, 408, 475, 481, 714
MboII GAAGA 6 cut(s) 67, 476, 564, 688, 1027, 1171
MflI RGATCY 2 cut(s) 105, 714
MhlI GDGCHC 2 cut(s) 190, 929
MluCI AATT 5 cut(s) 380, 394, 518, 763, 1054
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 2 cut(s) 610, 914
MnlI CCTC 7 cut(s) 54, 106, 308, 672, 750, 768, 1005
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 2 cut(s) 150, 1182
MslI CAYNNNNRTG 2 cut(s) 52, 1106
MspA1I CMGCKG 2 cut(s) 905, 1009
MspI CCGG 3 cut(s) 6, 333, 497
MspR9I CCNGG 5 cut(s) 11, 65, 334, 344, 1171
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 4 cut(s) 11, 65, 344, 1171
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 3 cut(s) 967, 1130, 1175
NciI CCSGG 1 cut(s) 334
NcoI CCATGG 1 cut(s) 1189
NdeII GATC 5 cut(s) 105, 408, 475, 481, 714
NlaIII CATG 9 cut(s) 57, 185, 329, 352, 496, 625, 756, 1144, 1193
NlaIV GGNNCC 7 cut(s) 187, 188, 296, 313, 434, 716, 910
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 2 cut(s) 805, 1093
NspI RCATGY 1 cut(s) 496
PagI TCATGA 2 cut(s) 325, 621
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 997
PctI GAATGC 1 cut(s) 1123
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 875
PkrI GCNGC 2 cut(s) 359, 1123
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 609
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 4 cut(s) 9, 63, 342, 1169
PspFI CCCAGC 2 cut(s) 389, 1005
PspGI CCWGG 4 cut(s) 9, 63, 342, 1169
PspN4I GGNNCC 7 cut(s) 187, 188, 296, 313, 434, 716, 910
PspOMI GGGCCC 1 cut(s) 186
PspPI GGNCC 5 cut(s) 186, 187, 295, 432, 866
PspPPI RGGWCCY 1 cut(s) 295
PstI CTGCAG 1 cut(s) 963
PsuI RGATCY 2 cut(s) 105, 714
PvuII CAGCTG 2 cut(s) 905, 1009
RsaI GTAC 4 cut(s) 62, 86, 365, 910
RsaNI GTAC 4 cut(s) 61, 85, 364, 909
RseI CAYNNNNRTG 2 cut(s) 52, 1106
SaqAI TTAA 2 cut(s) 150, 1182
SatI GCNGC 2 cut(s) 358, 1122
Sau3AI GATC 5 cut(s) 105, 408, 475, 481, 714
Sau96I GGNCC 5 cut(s) 186, 187, 295, 432, 866
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 5 cut(s) 11, 65, 334, 344, 1171
SduI GDGCHC 2 cut(s) 190, 929
SexAI ACCWGGT 1 cut(s) 342
SfaNI GCATC 5 cut(s) 559, 693, 985, 1075, 1098
SfcI CTRYAG 1 cut(s) 959
SinI GGWCC 3 cut(s) 295, 432, 866
SmiMI CAYNNNNRTG 2 cut(s) 52, 1106
SmlI CTYRAG 2 cut(s) 928, 971
SmoI CTYRAG 2 cut(s) 928, 971
SnaBI TACGTA 1 cut(s) 609
Sse9I AATT 5 cut(s) 380, 394, 518, 763, 1054
SsiI CCGC 2 cut(s) 279, 358
SspMI CTAG 2 cut(s) 354, 579
StyD4I CCNGG 5 cut(s) 9, 63, 332, 342, 1169
StyI CCWWGG 2 cut(s) 120, 1189
TaaI ACNGT 3 cut(s) 805, 913, 1030
TaiI ACGT 4 cut(s) 18, 566, 611, 659
TaqI TCGA 2 cut(s) 102, 674
TasI AATT 5 cut(s) 380, 394, 518, 763, 1054
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 2 cut(s) 150, 1182
Tru9I TTAA 2 cut(s) 150, 1182
TscAI CASTG 3 cut(s) 85, 810, 1033
TseFI GTSAC 2 cut(s) 805, 1093
TseI GCWGC 1 cut(s) 1121
Tsp45I GTSAC 2 cut(s) 805, 1093
TspDTI ATGAA 3 cut(s) 19, 257, 741
TspGWI ACGGA 2 cut(s) 187, 564
TspRI CASTG 3 cut(s) 85, 810, 1033
Van91I CCANNNNNTGG 1 cut(s) 875
VpaK11BI GGWCC 3 cut(s) 295, 432, 866
XapI RAATTY 1 cut(s) 518
XceI RCATGY 1 cut(s) 496
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 2 cut(s) 354, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.