pycom07g12680

Delta(8)-fatty-acid desaturase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
13996731 .. 13998080
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12680.1

Sequence Viewer

Length: 1350 bp
ATGGAAATGGAGGTGGAGAAGAAGTATATTTCTGCAGAGGAGCTGAAGAAGCACAAGAAGCCTAGAGATTTATGGATCTCTATCCAGGGCAAGGTTTACAATGTGTCCGATTGGGCGAAAGATCACCCCGGCGGCGATACGATTCTGTACAATCTGGGCGGCCAGGATGTTACAGACGCCTTCATCGCCTACCATCCCGGCACTGCATGGCAGTACCTCAAGAAATTCTCCACCGGAATTTATCTCAAAGATTTCGAGGTCTCCGAGGTGTCGAAAGATTACAGAAGAATGGCCACGGAGTTTTCGAAGGCGGGTTTGTTCGAGAAGAAGGGACACGGCGCTCTGTGCTCAATCGTTTTCATTGCCATCATGCTCAACCTCGTCGTGTACGGAGTTTTGAAATCCGACAGCGTCTTGGTACATTTGATCTGCGGGATGCTTCTGGGGATGTTGTGGATTGAGGGAGCTTACATCGGACACGATTCGGGGCATTACCAGGTAATGTCGAGCCGATTTTACAACAACATTGCCCAGATTGTTGCCGGTAATTGCTTCACCGGAATCAGCATTGCCTGGTGGAAGTGGACGCACAATGCCCACCACATTGCCTGCAACAGCCTCGATTACGACCCGGATCTCCAGCACATTCCGGTTTTTGCTGTCTCCGCAAAGTTTTTCAATTCGATCACCTCGATTTTTTACGGGAGAGTTTTGACGTTTGATCCTCTGGCAAGGCTTTTGGTCAGCTACCAGCATTTTACATATTACCCGGTTATGATGGTGGGGAGGGTTAATTTGTTTATCCAGACATTCTTGCTCTTGTTTTCGAGGCGGAATGTCCCGAACAGGGGATTGAACATCATCGGAATCCTTGTTTTCTGGACATGGTTTCCCCTCCTCGTTTCGTGTCTGCCCAATTGGAGTGAGAGGGTTATGTTTGTGCTGGCAGCATTTGCAGTGACGTCGCTCCAGCACATCCAATTCACGTTGAATCATTTCTCCGGCGACACCTATCTCGGTGCCCCCAATGCCAATGACTGGTTCGAGAAGCAAGCCGCGGGGACTATCGATATCTCCTGCTCAACTTGGATGGATTGGTTCTTTGGCGGCCTGCAGTTCCAGCTCGAACATCATTTGTTTCCGCGAATGCCTCGCGGACAACTGAGGAAGATTGCTCCAACTGTGAAGGAGCTGTGCAAGAAGCACAATTTGCCATACAGGAGCTTGTCCTTCTGGGAGGCCAATGTGTCCACAATTAGGACTCTAAGGAATGCTGCCCTTCAGGCTAGGGACCTGTCCAATCAAGTCCCGAAGAACTTGGTCTGGGAAGCTTTGAACACTCATGGCTGA

Protein Analysis

450

Amino Acids

51.42

Weight (kDa)

8.88

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 12 - 79 7.2e-23 Cytochrome b5-like Heme/Steroid binding domain
FA_desaturase PF00487 139 - 409 7.1e-35 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 1038
AccII CGCG 3 cut(s) 1058, 1144, 1155
AclWI GGATC 3 cut(s) 83, 642, 716
AcoI YGGCCR 2 cut(s) 160, 291
AcsI RAATTY 2 cut(s) 224, 237
AcuI CTGAAG 2 cut(s) 65, 1265
AcyI GRCGYC 2 cut(s) 177, 962
AfaI GTAC 4 cut(s) 149, 215, 389, 420
AfiI CCNNNNNNNGG 5 cut(s) 91, 847, 848, 1038, 1257
AgsI TTSAA 5 cut(s) 400, 679, 856, 991, 1336
AjnI CCWGG 4 cut(s) 84, 162, 495, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 1025, 1057
AluBI AGCT 7 cut(s) 43, 467, 747, 1123, 1192, 1224, 1331
AluI AGCT 7 cut(s) 43, 467, 747, 1123, 1192, 1224, 1331
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 2 cut(s) 265, 667
AlwI GGATC 3 cut(s) 83, 642, 716
AoxI GGCC 4 cut(s) 160, 291, 1108, 1239
ApeKI GCWGC 2 cut(s) 947, 1274
ApoI RAATTY 2 cut(s) 224, 237
Asp700I GAANNNNTTC 1 cut(s) 995
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 1291
AsuC2I CCSGG 4 cut(s) 129, 198, 632, 770
AsuHPI GGTGA 3 cut(s) 116, 547, 679
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 1291
BaeGI GKGCMC 1 cut(s) 1024
BalI TGGCCA 1 cut(s) 293
BanI GGYRCC 1 cut(s) 1019
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 959, 1261
BccI CCATC 4 cut(s) 201, 374, 772, 1084
BceAI ACGGC 1 cut(s) 352
BcgI CGANNNNNNTGC 4 cut(s) 601, 635, 945, 979
BciT130I CCWGG 4 cut(s) 86, 164, 497, 574
BcnI CCSGG 4 cut(s) 129, 198, 632, 770
BcoDI GTCTC 2 cut(s) 265, 667
BfaI CTAG 2 cut(s) 63, 1287
BfmI CTRYAG 2 cut(s) 33, 1112
BfoI RGCGCY 1 cut(s) 342
BglI GCCNNNNNGGC 1 cut(s) 1283
BisI GCNGC 6 cut(s) 133, 160, 948, 1056, 1108, 1275
BlsI GCNGC 6 cut(s) 134, 161, 949, 1057, 1109, 1276
Bme1390I CCNGG 8 cut(s) 86, 129, 164, 198, 497, 574, 632, 770
Bme18I GGWCC 1 cut(s) 1291
BmgT120I GGNCC 1 cut(s) 1291
BmiI GGNNCC 2 cut(s) 1021, 1292
BmrFI CCNGG 8 cut(s) 86, 129, 164, 198, 497, 574, 632, 770
BmsI GCATC 1 cut(s) 426
BpmI CTGGAG 2 cut(s) 623, 953
Bpu14I TTCGAA 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 4 cut(s) 129, 198, 632, 770
Bsa29I ATCGAT 1 cut(s) 1068
BsaBI GATNNNNATC 1 cut(s) 80
BsaHI GRCGYC 2 cut(s) 177, 962
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 5 cut(s) 85, 127, 264, 294, 1056
BsaWI WCCGGW 3 cut(s) 233, 557, 649
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 847, 848, 1038, 1257
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 1043
Bse3DI GCAATG 4 cut(s) 360, 525, 567, 603
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 4 cut(s) 86, 164, 497, 574
BseCI ATCGAT 1 cut(s) 1068
BseDI CCNNGG 5 cut(s) 85, 127, 264, 294, 1056
BseGI GGATG 6 cut(s) 172, 193, 441, 453, 975, 1095
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 5 cut(s) 91, 847, 848, 1038, 1257
BseMI GCAATG 4 cut(s) 360, 525, 567, 603
BseMII CTCAG 1 cut(s) 1154
BseNI ACTGG 1 cut(s) 1043
BseRI GAGGAG 2 cut(s) 53, 887
BseSI GKGCMC 1 cut(s) 1024
BseXI GCAGC 2 cut(s) 959, 1261
Bsh1236I CGCG 3 cut(s) 1058, 1144, 1155
BshFI GGCC 4 cut(s) 162, 293, 1110, 1241
BshNI GGYRCC 1 cut(s) 1019
BshVI ATCGAT 1 cut(s) 1068
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 9 cut(s) 129, 198, 234, 543, 558, 632, 650, 770, 1002
BslFI GGGAC 5 cut(s) 345, 824, 1075, 1292, 1304
BslI CCNNNNNNNGG 5 cut(s) 91, 847, 848, 1038, 1257
BsmAI GTCTC 2 cut(s) 265, 667
BsmFI GGGAC 5 cut(s) 345, 824, 1075, 1292, 1304
BsmI GAATGC 2 cut(s) 1152, 1276
BsnI GGCC 4 cut(s) 162, 293, 1110, 1241
Bso31I GGTCTC 1 cut(s) 265
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 350, 1024
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 6 cut(s) 75, 121, 426, 634, 684, 721
BspANI GGCC 4 cut(s) 162, 293, 1110, 1241
BspCNI CTCAG 1 cut(s) 1155
BspDI ATCGAT 1 cut(s) 1068
BspFNI CGCG 3 cut(s) 1058, 1144, 1155
BspLI GGNNCC 2 cut(s) 1021, 1292
BspMAI CTGCAG 2 cut(s) 37, 1116
BspPI GGATC 3 cut(s) 83, 642, 716
BspT104I TTCGAA 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 1019
BspTNI GGTCTC 1 cut(s) 265
BsrDI GCAATG 4 cut(s) 360, 525, 567, 603
BsrFI RCCGGY 1 cut(s) 542
BsrGI TGTACA 1 cut(s) 147
BsrI ACTGG 1 cut(s) 1043
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 5 cut(s) 85, 127, 264, 294, 1056
BssMI GATC 6 cut(s) 75, 121, 426, 634, 684, 721
BssNI GRCGYC 2 cut(s) 177, 962
Bst2UI CCWGG 4 cut(s) 86, 164, 497, 574
Bst4CI ACNGT 1 cut(s) 1183
BstACI GRCGYC 2 cut(s) 177, 962
BstAPI GCANNNNNTGC 2 cut(s) 953, 1210
BstAUI TGTACA 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 4 cut(s) 610, 945, 1053, 1112
BstDEI CTNAG 2 cut(s) 1163, 1265
BstDSI CCRYGG 2 cut(s) 294, 1056
BstF5I GGATG 6 cut(s) 172, 193, 441, 453, 975, 1095
BstFNI CGCG 3 cut(s) 1058, 1144, 1155
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 6 cut(s) 78, 124, 429, 637, 687, 724
BstMAI GTCTC 2 cut(s) 265, 667
BstMBI GATC 6 cut(s) 75, 121, 426, 634, 684, 721
BstNI CCWGG 4 cut(s) 86, 164, 497, 574
BstSCI CCNGG 8 cut(s) 84, 127, 162, 196, 495, 572, 630, 768
BstSFI CTRYAG 2 cut(s) 33, 1112
BstSLI GKGCMC 1 cut(s) 1024
BstUI CGCG 3 cut(s) 1058, 1144, 1155
BstV1I GCAGC 2 cut(s) 959, 1261
BstX2I RGATCY 2 cut(s) 75, 634
BstYI RGATCY 2 cut(s) 75, 634
Bsu15I ATCGAT 1 cut(s) 1068
BsuRI GGCC 4 cut(s) 162, 293, 1110, 1241
BsuTUI ATCGAT 1 cut(s) 1068
BtgI CCRYGG 2 cut(s) 294, 1056
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 6 cut(s) 172, 193, 441, 453, 975, 1095
BtsI GCAGTG 2 cut(s) 201, 963
BtsIMutI CAGTG 2 cut(s) 201, 963
Cac8I GCNNGC 4 cut(s) 610, 945, 1053, 1112
CfoI GCGC 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 1291
Cfr42I CCGCGG 1 cut(s) 1059
ClaI ATCGAT 1 cut(s) 1068
CseI GACGC 3 cut(s) 185, 400, 595
CsiI ACCWGGT 1 cut(s) 495
Csp6I GTAC 4 cut(s) 148, 214, 388, 419
CviAII CATG 4 cut(s) 207, 370, 885, 1343
CviQI GTAC 4 cut(s) 148, 214, 388, 419
DdeI CTNAG 2 cut(s) 1163, 1265
DpnI GATC 6 cut(s) 77, 123, 428, 636, 686, 723
DpnII GATC 6 cut(s) 75, 121, 426, 634, 684, 721
EaeI YGGCCR 2 cut(s) 160, 291
EciI GGCGGA 1 cut(s) 847
Eco31I GGTCTC 1 cut(s) 265
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 1 cut(s) 1291
Eco57I CTGAAG 2 cut(s) 65, 1265
EcoO109I RGGNCCY 1 cut(s) 1291
EcoRII CCWGG 4 cut(s) 84, 162, 495, 572
EcoRV GATATC 1 cut(s) 1072
FaeI CATG 4 cut(s) 210, 373, 888, 1346
FaqI GGGAC 5 cut(s) 345, 824, 1075, 1292, 1304
FatI CATG 4 cut(s) 206, 369, 884, 1342
FauI CCCGC 3 cut(s) 304, 425, 1051
Fnu4HI GCNGC 6 cut(s) 133, 160, 948, 1056, 1108, 1275
FokI GGATG 6 cut(s) 179, 180, 448, 460, 962, 1102
Fsp4HI GCNGC 6 cut(s) 133, 160, 948, 1056, 1108, 1275
FspBI CTAG 2 cut(s) 63, 1287
GlaI GCGC 1 cut(s) 340
GluI GCNGC 6 cut(s) 133, 160, 948, 1056, 1108, 1275
GsuI CTGGAG 2 cut(s) 623, 953
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 4 cut(s) 162, 293, 1110, 1241
HapII CCGG 9 cut(s) 129, 198, 234, 543, 558, 632, 650, 770, 1002
HgaI GACGC 3 cut(s) 185, 400, 595
HhaI GCGC 1 cut(s) 341
Hin1I GRCGYC 2 cut(s) 177, 962
Hin1II CATG 4 cut(s) 210, 373, 888, 1346
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HindIII AAGCTT 1 cut(s) 1329
HinfI GANTC 6 cut(s) 142, 482, 561, 867, 991, 1261
HpaII CCGG 9 cut(s) 129, 198, 234, 543, 558, 632, 650, 770, 1002
HphI GGTGA 3 cut(s) 116, 547, 679
Hpy166II GTNNAC 4 cut(s) 97, 388, 585, 1251
Hpy188I TCNGA 5 cut(s) 109, 265, 406, 476, 866
Hpy188III TCNNGA 7 cut(s) 220, 322, 805, 841, 880, 1045, 1309
Hpy8I GTNNAC 4 cut(s) 97, 388, 585, 1251
Hpy99I CGWCG 2 cut(s) 386, 967
HpyAV CCTTC 6 cut(s) 190, 301, 322, 1180, 1240, 1289
HpyCH4III ACNGT 1 cut(s) 1183
HpyCH4IV ACGT 3 cut(s) 716, 962, 986
HpyCH4V TGCA 6 cut(s) 35, 206, 612, 956, 1114, 1197
HpyF3I CTNAG 2 cut(s) 1163, 1265
HpySE526I ACGT 3 cut(s) 716, 962, 986
Hsp92I GRCGYC 2 cut(s) 177, 962
Hsp92II CATG 4 cut(s) 210, 373, 888, 1346
HspAI GCGC 1 cut(s) 339
KspI CCGCGG 1 cut(s) 1059
Kzo9I GATC 6 cut(s) 75, 121, 426, 634, 684, 721
LmnI GCTCC 6 cut(s) 40, 464, 972, 1180, 1189, 1221
Lsp1109I GCAGC 2 cut(s) 959, 1261
LweI GCATC 1 cut(s) 426
MabI ACCWGGT 1 cut(s) 495
MaeI CTAG 2 cut(s) 63, 1287
MaeII ACGT 3 cut(s) 716, 962, 986
MaeIII GTNAC 2 cut(s) 169, 958
MalI GATC 6 cut(s) 77, 123, 428, 636, 686, 723
MboI GATC 6 cut(s) 75, 121, 426, 634, 684, 721
MboII GAAGA 6 cut(s) 31, 58, 297, 337, 1180, 1324
MfeI CAATTG 1 cut(s) 916
MflI RGATCY 2 cut(s) 75, 634
MhlI GDGCHC 2 cut(s) 350, 1024
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 9 cut(s) 224, 237, 547, 679, 793, 916, 980, 1207, 1254
MluNI TGGCCA 1 cut(s) 293
MlyI GAGTC 1 cut(s) 1255
MmeI TCCRAC 2 cut(s) 429, 1202
Mox20I TGGCCA 1 cut(s) 293
MroXI GAANNNNTTC 1 cut(s) 995
MscI TGGCCA 1 cut(s) 293
MseI TTAA 1 cut(s) 792
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 1058
MspI CCGG 9 cut(s) 129, 198, 234, 543, 558, 632, 650, 770, 1002
MspR9I CCNGG 8 cut(s) 86, 129, 164, 198, 497, 574, 632, 770
MunI CAATTG 1 cut(s) 916
Mva1269I GAATGC 2 cut(s) 1152, 1276
MvaI CCWGG 4 cut(s) 86, 164, 497, 574
MvnI CGCG 3 cut(s) 1058, 1144, 1155
NciI CCSGG 4 cut(s) 129, 198, 632, 770
NdeII GATC 6 cut(s) 75, 121, 426, 634, 684, 721
NlaIII CATG 4 cut(s) 210, 373, 888, 1346
NlaIV GGNNCC 2 cut(s) 1021, 1292
NmuCI GTSAC 1 cut(s) 958
NspV TTCGAA 1 cut(s) 305
PcsI WCGNNNNNNNCGW 3 cut(s) 261, 302, 689
PctI GAATGC 2 cut(s) 1152, 1276
PdmI GAANNNNTTC 1 cut(s) 995
PfeI GAWTC 5 cut(s) 142, 482, 561, 867, 991
PflFI GACNNNGTC 1 cut(s) 410
PflMI CCANNNNNTGG 1 cut(s) 1038
PkrI GCNGC 6 cut(s) 134, 161, 949, 1057, 1109, 1276
PleI GAGTC 1 cut(s) 1255
PpsI GAGTC 1 cut(s) 1255
PpuMI RGGWCCY 1 cut(s) 1291
Psp5II RGGWCCY 1 cut(s) 1291
Psp6I CCWGG 4 cut(s) 84, 162, 495, 572
PspGI CCWGG 4 cut(s) 84, 162, 495, 572
PspN4I GGNNCC 2 cut(s) 1021, 1292
PspPI GGNCC 1 cut(s) 1291
PspPPI RGGWCCY 1 cut(s) 1291
PstI CTGCAG 2 cut(s) 37, 1116
PsuI RGATCY 2 cut(s) 75, 634
PsyI GACNNNGTC 1 cut(s) 410
RsaI GTAC 4 cut(s) 149, 215, 389, 420
RsaNI GTAC 4 cut(s) 148, 214, 388, 419
SacII CCGCGG 1 cut(s) 1059
SaqAI TTAA 1 cut(s) 792
SatI GCNGC 6 cut(s) 133, 160, 948, 1056, 1108, 1275
Sau3AI GATC 6 cut(s) 75, 121, 426, 634, 684, 721
Sau96I GGNCC 1 cut(s) 1291
SchI GAGTC 1 cut(s) 1255
ScrFI CCNGG 8 cut(s) 86, 129, 164, 198, 497, 574, 632, 770
SduI GDGCHC 2 cut(s) 350, 1024
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 1 cut(s) 426
SfcI CTRYAG 2 cut(s) 33, 1112
Sfr303I CCGCGG 1 cut(s) 1059
SfuI TTCGAA 1 cut(s) 305
SgrBI CCGCGG 1 cut(s) 1059
SinI GGWCC 1 cut(s) 1291
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 9 cut(s) 224, 237, 547, 679, 793, 916, 980, 1207, 1254
SspMI CTAG 2 cut(s) 63, 1287
StyD4I CCNGG 8 cut(s) 84, 127, 162, 196, 495, 572, 630, 768
TaaI ACNGT 1 cut(s) 1183
TaiI ACGT 3 cut(s) 719, 965, 989
TasI AATT 9 cut(s) 224, 237, 547, 679, 793, 916, 980, 1207, 1254
TatI WGTACW 1 cut(s) 147
TauI GCSGC 4 cut(s) 135, 162, 1058, 1110
TfiI GAWTC 5 cut(s) 142, 482, 561, 867, 991
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TscAI CASTG 2 cut(s) 208, 963
TseFI GTSAC 1 cut(s) 958
TseI GCWGC 2 cut(s) 947, 1274
Tsp45I GTSAC 1 cut(s) 958
TspDTI ATGAA 2 cut(s) 172, 349
TspGWI ACGGA 2 cut(s) 311, 405
TspRI CASTG 2 cut(s) 208, 963
Tth111I GACNNNGTC 1 cut(s) 410
Van91I CCANNNNNTGG 1 cut(s) 1038
VpaK11BI GGWCC 1 cut(s) 1291
XapI RAATTY 2 cut(s) 224, 237
XmnI GAANNNNTTC 1 cut(s) 995
XspI CTAG 2 cut(s) 63, 1287
ZraI GACGTC 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.