MD01G1073000.v1.1

Delta(8)-fatty-acid desaturase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
17814505 .. 17815848
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1073000.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGGAGGTGGAGAAGAAGTATATTTCTGTAGAGGAGTTGAAGAAACACAACAAGCCTGGAGATTTATGGATCTCTATCCAGGGCAAGGTCTACAATGTCTCCGATTGGACGAAAGATCACCCCGGCGGCGATACCATTCTGTACAATCTGGGTGGCCTGGATGTTACAGACGCGTTCATCGCTTACCATCCCCGCACTGCATGGCAGTACCTCAAGAAATTCTCCACCGGAATTTATCTCAAAGATTTCGAGGTCTCCGAAGTGTCGAAAGATTACAGAAGAATGGCAACGGAGTTTTCGAAGGCGGGTTTGTTCGAGAAGAAGGGGCACGGCGCTCTGTGCTCGATCACCATCATTTCAATCATGTTCTGCCTCTCCGTGTACGGAGTTTTGAAGTCCGACAGCGTTTTGGTGCATTTGATGAGCGGGATGCTTCTGGGGATGTTGTGGATAGAGGGAGCTTACGTCGGACATGATTGCGGGCATTACCAGGTAATGCCAAGCCAACTGTGCAACAACATTGCCCAGATTGTTGCCGGTAATTGCCTTACGGGAATCAGCATCGCCTGGTGGAAGTGGACTCATAATGCCCACCACATTGCCTGCAACAGCCTCGATTACGACCCGGATCTCCAGCACATTCCGGTTTTCGCCGTCTCCACTAAGTTTTTCAATTCGATCACCTCGATTTTTTACGGGAGAGTTTTGACATTTGATCCTCTGGCTAGGTTTTTGGTCAGCTACCAGCACTTTACATATTATCCGGTTATGATGGTGGGGAGGGTTAATTTGTTCATCCAGACATTCTTGCTCTTGTGTTCGAGGCGGGATGTCCCAAACAGAGGATTGAACATCATGGGAATCCTAGTTTTCTGGACATGGTTTCCTCTCCTCGTTTCGTGTTTGCCCAACTGGAGTGAGAGGGTTATGTTTGTGCTGGCAGCATTTGCAGTGACATCCCTCCAGCACATCCAATTCACATTGAATCATTTCTCCGGCGACACCTATCTCGGTGCCCCCAATGGCAATGACTGGTTCGAGAAGCAAGCCGCGGGGACTGTCGATATCTCCTGCTCAACTAAGATGGATTGGTTCTTCGGCGGGCTGCAGTTCCAGCTCGAACATCATTTGTTTCCGCGAATGCCTCGCGGACAACTGAGGAAGATTGCTCCTACTGTGAAGGAGTTGTGCAAGAAGCACAATTTGCCATACAGGAGCTTGTCCTTCTGGGAGGCCAATAAGGCCACACTCAGGACTCTAAGGACTGCCGCCCTCCAGGCTAGAGACCTGTCGAATCCAGTCCCGAAGAACTTGGTCTGGGAAGCTTTGAACACTCATGGCTGA

Protein Analysis

448

Amino Acids

50.96

Weight (kDa)

8.77

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 10 - 77 3e-22 Cytochrome b5-like Heme/Steroid binding domain
FA_desaturase PF00487 138 - 407 6.6e-34 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1013
AccBSI CCGCTC 1 cut(s) 426
AccI GTMKAC 1 cut(s) 90
AccII CGCG 4 cut(s) 173, 1052, 1138, 1149
AclWI GGATC 3 cut(s) 77, 636, 710
AcsI RAATTY 2 cut(s) 218, 231
AfaI GTAC 3 cut(s) 143, 209, 383
AfiI CCNNNNNNNGG 3 cut(s) 85, 842, 1251
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 7 cut(s) 40, 360, 394, 673, 850, 985, 1330
AjnI CCWGG 6 cut(s) 55, 78, 156, 489, 566, 1275
AluBI AGCT 5 cut(s) 461, 741, 1117, 1218, 1325
AluI AGCT 5 cut(s) 461, 741, 1117, 1218, 1325
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 4 cut(s) 103, 259, 661, 1278
AlwI GGATC 3 cut(s) 77, 636, 710
AoxI GGCC 3 cut(s) 154, 1233, 1242
ApeKI GCWGC 2 cut(s) 941, 1105
ApoI RAATTY 2 cut(s) 218, 231
Asp700I GAANNNNTTC 1 cut(s) 989
AspLEI GCGC 1 cut(s) 335
AsuC2I CCSGG 2 cut(s) 123, 626
AsuHPI GGTGA 3 cut(s) 110, 340, 673
AsuII TTCGAA 1 cut(s) 299
BaeGI GKGCMC 2 cut(s) 330, 1018
BanI GGYRCC 1 cut(s) 1013
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 953, 1092
BccI CCATC 4 cut(s) 195, 359, 766, 1078
BceAI ACGGC 2 cut(s) 346, 638
BcgI CGANNNNNNTGC 2 cut(s) 595, 629
BciT130I CCWGG 6 cut(s) 57, 80, 158, 491, 568, 1277
BcnI CCSGG 2 cut(s) 123, 626
BcoDI GTCTC 4 cut(s) 103, 259, 661, 1278
BfaI CTAG 3 cut(s) 726, 866, 1281
BfmI CTRYAG 2 cut(s) 27, 1106
BfoI RGCGCY 1 cut(s) 336
BglI GCCNNNNNGGC 2 cut(s) 1241, 1277
BisI GCNGC 5 cut(s) 127, 942, 1050, 1106, 1269
BlsI GCNGC 5 cut(s) 128, 943, 1051, 1107, 1270
Bme1390I CCNGG 8 cut(s) 57, 80, 123, 158, 491, 568, 626, 1277
BmiI GGNNCC 1 cut(s) 1015
BmrFI CCNGG 8 cut(s) 57, 80, 123, 158, 491, 568, 626, 1277
BmsI GCATC 2 cut(s) 420, 570
BpmI CTGGAG 5 cut(s) 78, 617, 934, 947, 1259
Bpu14I TTCGAA 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 2 cut(s) 123, 626
BsaBI GATNNNNATC 2 cut(s) 74, 350
BsaI GGTCTC 2 cut(s) 259, 1278
BsaJI CCNNGG 3 cut(s) 79, 121, 1050
BsaWI WCCGGW 3 cut(s) 227, 643, 763
BsaXI ACNNNNNCTCC 5 cut(s) 32, 83, 113, 450, 480
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 842, 1251
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 3 cut(s) 917, 1037, 1298
Bse3DI GCAATG 3 cut(s) 519, 597, 1033
Bse8I GATNNNNATC 2 cut(s) 74, 350
BseBI CCWGG 6 cut(s) 57, 80, 158, 491, 568, 1277
BseDI CCNNGG 3 cut(s) 79, 121, 1050
BseGI GGATG 8 cut(s) 166, 187, 435, 447, 795, 835, 956, 969
BseJI GATNNNNATC 2 cut(s) 74, 350
BseLI CCNNNNNNNGG 3 cut(s) 85, 842, 1251
BseMI GCAATG 3 cut(s) 519, 597, 1033
BseMII CTCAG 2 cut(s) 1148, 1264
BseNI ACTGG 3 cut(s) 917, 1037, 1298
BseRI GAGGAG 2 cut(s) 47, 881
BseSI GKGCMC 2 cut(s) 330, 1018
BseXI GCAGC 2 cut(s) 953, 1092
Bsh1236I CGCG 4 cut(s) 173, 1052, 1138, 1149
BshFI GGCC 3 cut(s) 156, 1235, 1244
BshNI GGYRCC 1 cut(s) 1013
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 7 cut(s) 123, 228, 537, 626, 644, 764, 996
BslFI GGGAC 3 cut(s) 818, 1069, 1286
BslI CCNNNNNNNGG 3 cut(s) 85, 842, 1251
BsmAI GTCTC 4 cut(s) 103, 259, 661, 1278
BsmBI CGTCTC 1 cut(s) 661
BsmFI GGGAC 3 cut(s) 818, 1069, 1286
BsmI GAATGC 1 cut(s) 1146
BsnI GGCC 3 cut(s) 156, 1235, 1244
Bso31I GGTCTC 2 cut(s) 259, 1278
Bsp119I TTCGAA 1 cut(s) 299
Bsp1286I GDGCHC 3 cut(s) 330, 344, 1018
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 6 cut(s) 69, 115, 345, 628, 678, 715
BspANI GGCC 3 cut(s) 156, 1235, 1244
BspCNI CTCAG 2 cut(s) 1149, 1263
BspFNI CGCG 4 cut(s) 173, 1052, 1138, 1149
BspLI GGNNCC 1 cut(s) 1015
BspMAI CTGCAG 1 cut(s) 1110
BspPI GGATC 3 cut(s) 77, 636, 710
BspT104I TTCGAA 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 1013
BspTNI GGTCTC 2 cut(s) 259, 1278
BsrBI CCGCTC 1 cut(s) 426
BsrDI GCAATG 3 cut(s) 519, 597, 1033
BsrFI RCCGGY 1 cut(s) 536
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 3 cut(s) 917, 1037, 1298
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 3 cut(s) 79, 121, 1050
BssMI GATC 6 cut(s) 69, 115, 345, 628, 678, 715
Bst2UI CCWGG 6 cut(s) 57, 80, 158, 491, 568, 1277
Bst4CI ACNGT 3 cut(s) 510, 1060, 1177
BstAPI GCANNNNNTGC 2 cut(s) 947, 1204
BstAUI TGTACA 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 5 cut(s) 482, 604, 939, 1047, 1103
BstDEI CTNAG 5 cut(s) 663, 1080, 1157, 1250, 1259
BstDSI CCRYGG 1 cut(s) 1050
BstF5I GGATG 8 cut(s) 166, 187, 435, 447, 795, 835, 956, 969
BstFNI CGCG 4 cut(s) 173, 1052, 1138, 1149
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 6 cut(s) 72, 118, 348, 631, 681, 718
BstMAI GTCTC 4 cut(s) 103, 259, 661, 1278
BstMBI GATC 6 cut(s) 69, 115, 345, 628, 678, 715
BstMWI GCNNNNNNNGC 8 cut(s) 179, 339, 510, 947, 1114, 1204, 1241, 1277
BstNI CCWGG 6 cut(s) 57, 80, 158, 491, 568, 1277
BstSCI CCNGG 8 cut(s) 55, 78, 121, 156, 489, 566, 624, 1275
BstSFI CTRYAG 2 cut(s) 27, 1106
BstSLI GKGCMC 2 cut(s) 330, 1018
BstUI CGCG 4 cut(s) 173, 1052, 1138, 1149
BstV1I GCAGC 2 cut(s) 953, 1092
BstX2I RGATCY 2 cut(s) 69, 628
BstYI RGATCY 2 cut(s) 69, 628
BsuRI GGCC 3 cut(s) 156, 1235, 1244
BtgI CCRYGG 1 cut(s) 1050
BtgZI GCGATG 2 cut(s) 163, 547
BtsCI GGATG 8 cut(s) 166, 187, 435, 447, 795, 835, 956, 969
BtsI GCAGTG 2 cut(s) 195, 957
BtsIMutI CAGTG 2 cut(s) 195, 957
Cac8I GCNNGC 5 cut(s) 482, 604, 939, 1047, 1103
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 536
Cfr42I CCGCGG 1 cut(s) 1053
CseI GACGC 1 cut(s) 179
CsiI ACCWGGT 1 cut(s) 489
Csp6I GTAC 3 cut(s) 142, 208, 382
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 6 cut(s) 201, 364, 473, 856, 879, 1337
CviQI GTAC 3 cut(s) 142, 208, 382
DdeI CTNAG 5 cut(s) 663, 1080, 1157, 1250, 1259
DpnI GATC 6 cut(s) 71, 117, 347, 630, 680, 717
DpnII GATC 6 cut(s) 69, 115, 345, 628, 678, 715
Eco31I GGTCTC 2 cut(s) 259, 1278
Eco32I GATATC 1 cut(s) 1066
EcoRII CCWGG 6 cut(s) 55, 78, 156, 489, 566, 1275
EcoRV GATATC 1 cut(s) 1066
Esp3I CGTCTC 1 cut(s) 661
FaeI CATG 6 cut(s) 204, 367, 476, 859, 882, 1340
FaqI GGGAC 3 cut(s) 818, 1069, 1286
FatI CATG 6 cut(s) 200, 363, 472, 855, 878, 1336
FauI CCCGC 7 cut(s) 200, 298, 419, 473, 819, 1045, 1094
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 5 cut(s) 127, 942, 1050, 1106, 1269
FokI GGATG 8 cut(s) 173, 174, 442, 454, 782, 842, 943, 956
Fsp4HI GCNGC 5 cut(s) 127, 942, 1050, 1106, 1269
FspBI CTAG 3 cut(s) 726, 866, 1281
GlaI GCGC 1 cut(s) 334
GluI GCNGC 5 cut(s) 127, 942, 1050, 1106, 1269
GsuI CTGGAG 5 cut(s) 78, 617, 934, 947, 1259
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 3 cut(s) 156, 1235, 1244
HapII CCGG 7 cut(s) 123, 228, 537, 626, 644, 764, 996
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 335
Hin1II CATG 6 cut(s) 204, 367, 476, 859, 882, 1340
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 1323
HinfI GANTC 6 cut(s) 555, 580, 861, 985, 1255, 1294
HpaII CCGG 7 cut(s) 123, 228, 537, 626, 644, 764, 996
HphI GGTGA 3 cut(s) 110, 340, 673
Hpy166II GTNNAC 3 cut(s) 91, 382, 579
Hpy188I TCNGA 4 cut(s) 103, 259, 400, 470
Hpy188III TCNNGA 7 cut(s) 214, 316, 799, 874, 1039, 1252, 1303
Hpy8I GTNNAC 3 cut(s) 91, 382, 579
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 4 cut(s) 295, 316, 1174, 1234
HpyCH4III ACNGT 3 cut(s) 510, 1060, 1177
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 7 cut(s) 200, 415, 513, 606, 950, 1108, 1191
HpyF10VI GCNNNNNNNGC 8 cut(s) 179, 339, 510, 947, 1114, 1204, 1241, 1277
HpyF3I CTNAG 5 cut(s) 663, 1080, 1157, 1250, 1259
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 6 cut(s) 204, 367, 476, 859, 882, 1340
HspAI GCGC 1 cut(s) 333
KspI CCGCGG 1 cut(s) 1053
Kzo9I GATC 6 cut(s) 69, 115, 345, 628, 678, 715
LmnI GCTCC 3 cut(s) 458, 1174, 1215
Lsp1109I GCAGC 2 cut(s) 953, 1092
LweI GCATC 2 cut(s) 420, 570
MabI ACCWGGT 1 cut(s) 489
MaeI CTAG 3 cut(s) 726, 866, 1281
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 163, 952
MalI GATC 6 cut(s) 71, 117, 347, 630, 680, 717
MbiI CCGCTC 1 cut(s) 426
MboI GATC 6 cut(s) 69, 115, 345, 628, 678, 715
MboII GAAGA 7 cut(s) 25, 52, 291, 331, 1087, 1174, 1318
MflI RGATCY 2 cut(s) 69, 628
MhlI GDGCHC 3 cut(s) 330, 344, 1018
MluCI AATT 7 cut(s) 218, 231, 541, 673, 787, 974, 1201
MluI ACGCGT 1 cut(s) 171
MlyI GAGTC 2 cut(s) 574, 1249
MmeI TCCRAC 2 cut(s) 423, 448
MroXI GAANNNNTTC 1 cut(s) 989
MseI TTAA 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 1052
MspI CCGG 7 cut(s) 123, 228, 537, 626, 644, 764, 996
MspR9I CCNGG 8 cut(s) 57, 80, 123, 158, 491, 568, 626, 1277
Mva1269I GAATGC 1 cut(s) 1146
MvaI CCWGG 6 cut(s) 57, 80, 158, 491, 568, 1277
MvnI CGCG 4 cut(s) 173, 1052, 1138, 1149
MwoI GCNNNNNNNGC 8 cut(s) 179, 339, 510, 947, 1114, 1204, 1241, 1277
NciI CCSGG 2 cut(s) 123, 626
NdeII GATC 6 cut(s) 69, 115, 345, 628, 678, 715
NlaIII CATG 6 cut(s) 204, 367, 476, 859, 882, 1340
NlaIV GGNNCC 1 cut(s) 1015
NmuCI GTSAC 1 cut(s) 952
NspV TTCGAA 1 cut(s) 299
PcsI WCGNNNNNNNCGW 3 cut(s) 255, 296, 683
PctI GAATGC 1 cut(s) 1146
PdmI GAANNNNTTC 1 cut(s) 989
PfeI GAWTC 4 cut(s) 555, 861, 985, 1294
PkrI GCNGC 5 cut(s) 128, 943, 1051, 1107, 1270
PleI GAGTC 2 cut(s) 574, 1249
PpsI GAGTC 2 cut(s) 574, 1249
Psp6I CCWGG 6 cut(s) 55, 78, 156, 489, 566, 1275
PspGI CCWGG 6 cut(s) 55, 78, 156, 489, 566, 1275
PspN4I GGNNCC 1 cut(s) 1015
PstI CTGCAG 1 cut(s) 1110
PsuI RGATCY 2 cut(s) 69, 628
RsaI GTAC 3 cut(s) 143, 209, 383
RsaNI GTAC 3 cut(s) 142, 208, 382
SacII CCGCGG 1 cut(s) 1053
SaqAI TTAA 1 cut(s) 786
SatI GCNGC 5 cut(s) 127, 942, 1050, 1106, 1269
Sau3AI GATC 6 cut(s) 69, 115, 345, 628, 678, 715
SchI GAGTC 2 cut(s) 574, 1249
ScrFI CCNGG 8 cut(s) 57, 80, 123, 158, 491, 568, 626, 1277
SduI GDGCHC 3 cut(s) 330, 344, 1018
SexAI ACCWGGT 1 cut(s) 489
SfaNI GCATC 2 cut(s) 420, 570
SfcI CTRYAG 2 cut(s) 27, 1106
SfiI GGCCNNNNNGGCC 1 cut(s) 1241
Sfr303I CCGCGG 1 cut(s) 1053
SfuI TTCGAA 1 cut(s) 299
SgrBI CCGCGG 1 cut(s) 1053
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 7 cut(s) 218, 231, 541, 673, 787, 974, 1201
SspMI CTAG 3 cut(s) 726, 866, 1281
StyD4I CCNGG 8 cut(s) 55, 78, 121, 156, 489, 566, 624, 1275
TaaI ACNGT 3 cut(s) 510, 1060, 1177
TaiI ACGT 1 cut(s) 468
TasI AATT 7 cut(s) 218, 231, 541, 673, 787, 974, 1201
TatI WGTACW 1 cut(s) 141
TauI GCSGC 3 cut(s) 129, 1052, 1271
TfiI GAWTC 4 cut(s) 555, 861, 985, 1294
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TscAI CASTG 2 cut(s) 202, 957
TseFI GTSAC 1 cut(s) 952
TseI GCWGC 2 cut(s) 941, 1105
Tsp45I GTSAC 1 cut(s) 952
TspDTI ATGAA 2 cut(s) 166, 784
TspGWI ACGGA 3 cut(s) 305, 367, 399
TspRI CASTG 2 cut(s) 202, 957
XapI RAATTY 2 cut(s) 218, 231
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 989
XspI CTAG 3 cut(s) 726, 866, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.