Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003231

Physical Location & Seq

Genomic Coordinates Reverse (-)

11015770 .. 11016750

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCTTTACCTTGTTGTGTATGGTGTGTTGAAGTCTGAGAGTGTGTTGGTTCATTTTGGTTGCGGTTGTTTGTTGGGGGTCCTCTGGATTCAGGCTGCCTATATAGGGCATGACTCTGGGCATTACCAGGTTATGTCGAGCCGCAGGTACAACAAAATCGCACAATTTCTGGCCGGAAATTGCCTGACTGGGATCAGCATTGCTTGGTGGAAATGGACTCACAATGCCCACCACATTGCCTGCAACAGCCTTGACTATGATCCCGATCTTCAGCACATGCCGGTGTTTGCTGTGTCCACAAAATTCTTTCATTCAATAACATCAACCTTTTATGGAAGAGAGCTGACATTTGATGCTGTGGCTAGATTTTTAGTCAGCCACCAGCATTTTACATATTATCCGATCATGATTGTTGGAAGGGTTAACTTGTTTATACAGACATTCTTGCTATTGTTCTCGAAGAGAAGCATCCCAGATAGAGCTTTGAACATAATGGGGATCCTTGTTTTCTGGACTTGGTTTCCTCTCCTTGTTTCGTGCCTGCCTAATTGGAGCGAGAGGTTTATGTTTGTGTTGGCGAGCTTTGCAGTGACAGCACTTCAGCACATTCAGTTCACTTTGAACCATTTCACAGGAGATACTTATCTTGGACCACCAACTGGGAACGATTGGTTTGAGAAGCAGACAGCTGGTACCGTGGATATTTCATGCTCGAATTGGATGGACTGGTTCTATGGTGGCCTGCAGTTTCAACTTGAGCATCATTTGTTCCCCCGATTACCCCGTTCCCAGCTAAGGAAGATTTCTCCCACAGTGAAGGAACTATGCAAGAAGCACAATTTGCCTTACAAGAGTTTGTCCTTCTTGGATGCCAATGTGACTACCATTAGGATGCTAAGGAATGCTGCCCAGCAGGCTTGGGACATGGCCCTTCCCGTCCCAAAGAACTTGGCCTGGGAAGCTGTTAATACCCATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0030148 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0050896 GO:0051716 GO:0052631 GO:0055114 GO:0070417 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_desaturase

Protein Analysis

327

Amino Acids

37.49

Weight (kDa)

8.92

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	16 - 285	1.5e-35	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46210 AT3G61580
fragaria_vesca	FvH4_7g15550 FvH4_7g15550 FvH4_7g15570
malus_domestica	MD01G1072900.v1.1 MD01G1073000.v1.1 MD07G1129700.v1.1 MD07G1130000.v1.1
prunus_persica	Prupe.2G179200_v2.0.a1 Prupe.2G179200_v2.0.a1 Prupe.2G179400_v2.0.a1
pyrus_communis	pycom01g10190 pycom01g10200 pycom07g12680 pycom07g12700
rosa_chinensis	RchiOBHm_Chr1g0358201 RchiOBHm_Chr1g0358241
rosa_laevigata	RLG00000027980 RLG00000027983
rosa_multiflora	Rmu_sc0002071.1_g000009 Rmu_sc0007072.1_g000001 Rmu_sc0023145.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298340 Rroxscaffold_4G00298370
rosa_rugosa	Rorug01G0259800 Rorug01G0259900
rosa_samantha	Rh1AG273500 Rh1AG273900 Rh1BG240700 Rh1BG241000 Rh1CG257100 Rh1CG257500 Rh1DG269600 Rh1DG269700
rosa_wichuraiana	Rw1G024450 Rw1G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	135
Acc65I	GGTACC	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	692
AccB7I	CCANNNNNTGG	1 cut(s)	659
AciI	CCGC	2 cut(s)	63, 142
AclWI	GGATC	4 cut(s)	200, 254, 493, 506
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	2 cut(s)	254, 584
AfaI	GTAC	2 cut(s)	149, 694
AfiI	CCNNNNNNNGG	3 cut(s)	105, 659, 795
AgsI	TTSAA	5 cut(s)	31, 315, 487, 622, 752
AjnI	CCWGG	2 cut(s)	126, 953
AluBI	AGCT	6 cut(s)	343, 482, 582, 689, 793, 962
AluI	AGCT	6 cut(s)	343, 482, 582, 689, 793, 962
AlwI	GGATC	4 cut(s)	200, 254, 493, 506
AoxI	GGCC	4 cut(s)	171, 739, 927, 951
ApeKI	GCWGC	2 cut(s)	95, 905
ApoI	RAATTY	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	626
Asp718I	GGTACC	1 cut(s)	692
AspS9I	GGNCC	3 cut(s)	79, 650, 928
AvaII	GGWCC	2 cut(s)	79, 650
BamHI	GGATCC	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	692
BbvI	GCAGC	2 cut(s)	82, 892
BccI	CCATC	1 cut(s)	715
BciT130I	CCWGG	2 cut(s)	128, 955
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	743
BfuAI	ACCTGC	1 cut(s)	135
BglI	GCCNNNNNGGC	1 cut(s)	914
BisI	GCNGC	3 cut(s)	96, 142, 906
BlsI	GCNGC	3 cut(s)	97, 143, 907
Bme1390I	CCNGG	2 cut(s)	128, 955
Bme18I	GGWCC	2 cut(s)	79, 650
BmgT120I	GGNCC	3 cut(s)	79, 650, 928
BmiI	GGNNCC	3 cut(s)	80, 500, 694
BmrFI	CCNGG	2 cut(s)	128, 955
BmrI	ACTGGG	2 cut(s)	198, 669
BmsI	GCATC	5 cut(s)	343, 477, 769, 859, 882
BmuI	ACTGGG	2 cut(s)	198, 669
Bpu10I	CCTNAGC	2 cut(s)	794, 896
BpuEI	CTTGAG	1 cut(s)	776
BsaBI	GATNNNNATC	2 cut(s)	264, 642
BsaJI	CCNNGG	3 cut(s)	696, 954, 973
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 659, 795
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	3 cut(s)	193, 664, 731
Bse3DI	GCAATG	2 cut(s)	198, 234
Bse8I	GATNNNNATC	2 cut(s)	264, 642
BseBI	CCWGG	2 cut(s)	128, 955
BseDI	CCNNGG	3 cut(s)	696, 954, 973
BseGI	GGATG	4 cut(s)	468, 726, 874, 897
BseJI	GATNNNNATC	2 cut(s)	264, 642
BseLI	CCNNNNNNNGG	3 cut(s)	105, 659, 795
BseMI	GCAATG	2 cut(s)	198, 234
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	3 cut(s)	193, 664, 731
BseXI	GCAGC	2 cut(s)	82, 892
BseYI	CCCAGC	2 cut(s)	789, 909
BshFI	GGCC	4 cut(s)	173, 741, 929, 953
BshNI	GGYRCC	1 cut(s)	692
BsiSI	CCGG	2 cut(s)	174, 281
BslFI	GGGAC	2 cut(s)	923, 935
BslI	CCNNNNNNNGG	3 cut(s)	105, 659, 795
BsmFI	GGGAC	2 cut(s)	923, 935
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	4 cut(s)	173, 741, 929, 953
Bsp143I	GATC	5 cut(s)	192, 259, 265, 402, 498
Bsp19I	CCATGG	1 cut(s)	973
BspACI	CCGC	2 cut(s)	63, 142
BspANI	GGCC	4 cut(s)	173, 741, 929, 953
BspCNI	CTCAG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	3 cut(s)	80, 500, 694
BspMAI	CTGCAG	1 cut(s)	747
BspMI	ACCTGC	1 cut(s)	135
BspPI	GGATC	4 cut(s)	200, 254, 493, 506
BspT107I	GGYRCC	1 cut(s)	692
BsrDI	GCAATG	2 cut(s)	198, 234
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	3 cut(s)	193, 664, 731
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	3 cut(s)	696, 954, 973
BssMI	GATC	5 cut(s)	192, 259, 265, 402, 498
BssT1I	CCWWGG	1 cut(s)	973
Bst2UI	CCWGG	2 cut(s)	128, 955
Bst4CI	ACNGT	2 cut(s)	697, 814
Bst6I	CTCTTC	2 cut(s)	331, 455
BstAPI	GCANNNNNTGC	1 cut(s)	841
BstC8I	GCNNGC	5 cut(s)	241, 542, 580, 743, 915
BstDEI	CTNAG	3 cut(s)	36, 794, 896
BstDSI	CCRYGG	2 cut(s)	696, 973
BstF5I	GGATG	4 cut(s)	468, 726, 874, 897
BstKTI	GATC	5 cut(s)	195, 262, 268, 405, 501
BstMBI	GATC	5 cut(s)	192, 259, 265, 402, 498
BstMWI	GCNNNNNNNGC	5 cut(s)	584, 593, 841, 914, 959
BstNI	CCWGG	2 cut(s)	128, 955
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	126, 953
BstSFI	CTRYAG	1 cut(s)	743
BstV1I	GCAGC	2 cut(s)	82, 892
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BsuRI	GGCC	4 cut(s)	173, 741, 929, 953
BtgI	CCRYGG	2 cut(s)	696, 973
BtsCI	GGATG	4 cut(s)	468, 726, 874, 897
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	2 cut(s)	594, 819
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	5 cut(s)	241, 542, 580, 743, 915
CciI	TCATGA	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	79, 650, 928
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	148, 693
CviAII	CATG	6 cut(s)	110, 277, 406, 708, 925, 974
CviQI	GTAC	2 cut(s)	148, 693
DdeI	CTNAG	3 cut(s)	36, 794, 896
DpnI	GATC	5 cut(s)	194, 261, 267, 404, 500
DpnII	GATC	5 cut(s)	192, 259, 265, 402, 498
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	331, 455
EarI	CTCTTC	2 cut(s)	331, 455
Eco130I	CCWWGG	1 cut(s)	973
Eco47I	GGWCC	2 cut(s)	79, 650
Eco57I	CTGAAG	2 cut(s)	254, 584
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	126, 953
EcoT14I	CCWWGG	1 cut(s)	973
ErhI	CCWWGG	1 cut(s)	973
FaeI	CATG	6 cut(s)	113, 280, 409, 711, 928, 977
FaqI	GGGAC	2 cut(s)	923, 935
FatI	CATG	6 cut(s)	109, 276, 405, 707, 924, 973
Fnu4HI	GCNGC	3 cut(s)	96, 142, 906
FokI	GGATG	4 cut(s)	455, 733, 881, 904
Fsp4HI	GCNGC	3 cut(s)	96, 142, 906
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	3 cut(s)	96, 142, 906
GsaI	CCCAGC	2 cut(s)	793, 913
HaeIII	GGCC	4 cut(s)	173, 741, 929, 953
HapII	CCGG	2 cut(s)	174, 281
Hin1II	CATG	6 cut(s)	113, 280, 409, 711, 928, 977
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	3 cut(s)	88, 113, 217
HpaI	GTTAAC	1 cut(s)	424
HpaII	CCGG	2 cut(s)	174, 281
Hpy166II	GTNNAC	3 cut(s)	297, 424, 615
Hpy188I	TCNGA	2 cut(s)	37, 402
Hpy188III	TCNNGA	5 cut(s)	85, 263, 406, 457, 511
Hpy8I	GTNNAC	3 cut(s)	297, 424, 615
HpyAV	CCTTC	4 cut(s)	411, 811, 871, 941
HpyCH4III	ACNGT	2 cut(s)	697, 814
HpyCH4V	TGCA	4 cut(s)	243, 587, 745, 828
HpyF10VI	GCNNNNNNNGC	5 cut(s)	584, 593, 841, 914, 959
HpyF3I	CTNAG	3 cut(s)	36, 794, 896
Hsp92II	CATG	6 cut(s)	113, 280, 409, 711, 928, 977
KpnI	GGTACC	1 cut(s)	696
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	5 cut(s)	192, 259, 265, 402, 498
LmnI	GCTCC	1 cut(s)	552
Lsp1109I	GCAGC	2 cut(s)	82, 892
LweI	GCATC	5 cut(s)	343, 477, 769, 859, 882
MabI	ACCWGGT	1 cut(s)	126
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	589, 877
MalI	GATC	5 cut(s)	194, 261, 267, 404, 500
MboI	GATC	5 cut(s)	192, 259, 265, 402, 498
MboII	GAAGA	4 cut(s)	260, 348, 472, 811
MflI	RGATCY	1 cut(s)	498
MluCI	AATT	6 cut(s)	164, 178, 302, 547, 715, 838
MlyI	GAGTC	2 cut(s)	107, 211
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	3 cut(s)	92, 534, 552
MroXI	GAANNNNTTC	1 cut(s)	626
MseI	TTAA	2 cut(s)	423, 966
MslI	CAYNNNNRTG	2 cut(s)	281, 890
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	2 cut(s)	174, 281
MspR9I	CCNGG	2 cut(s)	128, 955
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	2 cut(s)	128, 955
MwoI	GCNNNNNNNGC	5 cut(s)	584, 593, 841, 914, 959
NcoI	CCATGG	1 cut(s)	973
NdeII	GATC	5 cut(s)	192, 259, 265, 402, 498
NlaIII	CATG	6 cut(s)	113, 280, 409, 711, 928, 977
NlaIV	GGNNCC	3 cut(s)	80, 500, 694
NmuCI	GTSAC	2 cut(s)	589, 877
NspI	RCATGY	1 cut(s)	280
PagI	TCATGA	1 cut(s)	405
PctI	GAATGC	1 cut(s)	907
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	659
PkrI	GCNGC	3 cut(s)	97, 143, 907
PleI	GAGTC	2 cut(s)	107, 211
PpsI	GAGTC	2 cut(s)	107, 211
PpuMI	RGGWCCY	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	126, 953
PspFI	CCCAGC	2 cut(s)	789, 909
PspGI	CCWGG	2 cut(s)	126, 953
PspN4I	GGNNCC	3 cut(s)	80, 500, 694
PspPI	GGNCC	3 cut(s)	79, 650, 928
PspPPI	RGGWCCY	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	747
PsuI	RGATCY	1 cut(s)	498
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	2 cut(s)	149, 694
RsaNI	GTAC	2 cut(s)	148, 693
RseI	CAYNNNNRTG	2 cut(s)	281, 890
SaqAI	TTAA	2 cut(s)	423, 966
SatI	GCNGC	3 cut(s)	96, 142, 906
Sau3AI	GATC	5 cut(s)	192, 259, 265, 402, 498
Sau96I	GGNCC	3 cut(s)	79, 650, 928
SchI	GAGTC	2 cut(s)	107, 211
ScrFI	CCNGG	2 cut(s)	128, 955
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	5 cut(s)	343, 477, 769, 859, 882
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	2 cut(s)	79, 650
SmiMI	CAYNNNNRTG	2 cut(s)	281, 890
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	6 cut(s)	164, 178, 302, 547, 715, 838
SsiI	CCGC	2 cut(s)	63, 142
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	126, 953
StyI	CCWWGG	1 cut(s)	973
TaaI	ACNGT	2 cut(s)	697, 814
TaqI	TCGA	3 cut(s)	137, 458, 713
TasI	AATT	6 cut(s)	164, 178, 302, 547, 715, 838
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	423, 966
Tru9I	TTAA	2 cut(s)	423, 966
TscAI	CASTG	2 cut(s)	594, 819
TseFI	GTSAC	2 cut(s)	589, 877
TseI	GCWGC	2 cut(s)	95, 905
Tsp45I	GTSAC	2 cut(s)	589, 877
TspDTI	ATGAA	3 cut(s)	41, 299, 696
TspRI	CASTG	2 cut(s)	594, 819
Van91I	CCANNNNNTGG	1 cut(s)	659
VpaK11BI	GGWCC	2 cut(s)	79, 650
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.