Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003231

Physical Location & Seq

Genomic Coordinates Reverse (-)

36918125 .. 36919688

Gene Structure 1564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0259800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCTGCTCTTCTCTCCAGTACTAGGCTACTTGATCCAGTAGTAGTTGACGATATTGAAGAAGATAGAGAAAGCTTTGATAACGGTGCTGCTAGTTCGAGACCAAAAGAGCCATGGAAAGGAGAGTATGCCAAGAGCATTCTGTATGCTGGTCTCGATGCCATTGTCACTTGCTTCTCTCTAATCTCTTCCATCTCCGCCAGCCGTCTAACTTCCGCGGACGTGCTGGTGCTAGGATTTGCAAATCTGGTGGCAGATGGGATATCTATGGGAGTTGGAGATTTTTTGTCCAGCAGCAGCGAAAAGGATGTTGCCGCCAAAGAAATGGCGGTGACGGAATGGGATGTCACAAATCACGGCGGCCTTGAGAAGATGGAGTTGCTCCAAAAGTATCAAGCACTTGGGATGGACGTTGATGATGCCGCCACGGTTGTTAGCATTTTTGCCAAGTACAATGACATCTTGGTGCACGAGAAAATGATGGCTTATGGAAGGCTACCGCCAGAAGAAGCAGAAAAGCCATGGAAGAACGGCCTTGTAACATTTGCTGCCTTCCTTGTCTTTGGCACTGCTCCTCTCCTGTCTTTTATTGTCCTCATCCCATTTACGAACAGTGACTTGGTTAAGTTTGTTGGTGCTTGTATCCTCTCTGCGCTTGCACTCACGCTTCTTGGAATTGTAAAGGCCAAGATTGCAGGCCAGAACTATGCTTTCTCTGCGGTAGTGACTCTCTTCAATGGTGCTGCCGCCGCAGCTGCCGCTTATGCCGTTGGATGGACACTGAACAATATAGCTGGCCTAGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0030148 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0050896 GO:0051716 GO:0052631 GO:0055114 GO:0070417 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 FA_desaturase

Protein Analysis

269

Amino Acids

28.5

Weight (kDa)

4.58

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	46 - 258	1.7e-50	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46210 AT3G61580
fragaria_vesca	FvH4_7g15550 FvH4_7g15550 FvH4_7g15570
malus_domestica	MD01G1072900.v1.1 MD01G1073000.v1.1 MD07G1129700.v1.1 MD07G1130000.v1.1
prunus_persica	Prupe.2G179200_v2.0.a1 Prupe.2G179200_v2.0.a1 Prupe.2G179400_v2.0.a1
pyrus_communis	pycom01g10190 pycom01g10200 pycom07g12680 pycom07g12700
rosa_chinensis	RchiOBHm_Chr1g0358201 RchiOBHm_Chr1g0358241
rosa_laevigata	RLG00000027980 RLG00000027983
rosa_multiflora	Rmu_sc0002071.1_g000009 Rmu_sc0007072.1_g000001 Rmu_sc0023145.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298340 Rroxscaffold_4G00298370
rosa_rugosa	Rorug01G0259800 Rorug01G0259900
rosa_samantha	Rh1AG273500 Rh1AG273900 Rh1BG240700 Rh1BG241000 Rh1CG257100 Rh1CG257500 Rh1DG269600 Rh1DG269700
rosa_wichuraiana	Rw1G024450 Rw1G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	218
AclWI	GGATC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	22, 452
AfiI	CCNNNNNNNGG	3 cut(s)	24, 119, 774
AgsI	TTSAA	2 cut(s)	59, 736
AjiI	CACGTC	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	3 cut(s)	75, 755, 794
AluI	AGCT	3 cut(s)	75, 755, 794
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	2 cut(s)	94, 158
Alw44I	GTGCAC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	29
AoxI	GGCC	5 cut(s)	361, 532, 684, 697, 796
ApaLI	GTGCAC	1 cut(s)	467
ApeKI	GCWGC	8 cut(s)	5, 89, 294, 297, 548, 743, 752, 755
AspLEI	GCGC	1 cut(s)	655
AsuHPI	GGTGA	1 cut(s)	343
BaeGI	GKGCMC	1 cut(s)	471
BauI	CACGAG	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	7 cut(s)	76, 306, 309, 535, 730, 742, 764
BccI	CCATC	6 cut(s)	200, 251, 367, 400, 475, 768
BceAI	ACGGC	4 cut(s)	189, 373, 547, 752
BciVI	GTATCC	1 cut(s)	653
BcoDI	GTCTC	2 cut(s)	94, 158
BfaI	CTAG	4 cut(s)	24, 93, 233, 800
BfuI	GTATCC	1 cut(s)	653
BmcAI	AGTACT	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	223
BmsI	GCATC	2 cut(s)	148, 409
BpuEI	CTTGAG	1 cut(s)	386
BsaI	GGTCTC	2 cut(s)	94, 158
BsaJI	CCNNGG	4 cut(s)	113, 216, 426, 521
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 119, 774
Bse1I	ACTGG	2 cut(s)	18, 38
BseDI	CCNNGG	4 cut(s)	113, 216, 426, 521
BseGI	GGATG	5 cut(s)	313, 349, 411, 597, 779
BseLI	CCNNNNNNNGG	3 cut(s)	24, 119, 774
BseNI	ACTGG	2 cut(s)	18, 38
BseRI	GAGGAG	1 cut(s)	564
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	7 cut(s)	76, 306, 309, 535, 730, 742, 764
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	5 cut(s)	363, 534, 686, 699, 798
BsiHKAI	GWGCWC	1 cut(s)	471
BslI	CCNNNNNNNGG	3 cut(s)	24, 119, 774
BsmAI	GTCTC	2 cut(s)	94, 158
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	5 cut(s)	363, 534, 686, 699, 798
Bso31I	GGTCTC	2 cut(s)	94, 158
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	34
Bsp19I	CCATGG	2 cut(s)	113, 521
BspANI	GGCC	5 cut(s)	363, 534, 686, 699, 798
BspFNI	CGCG	1 cut(s)	218
BspPI	GGATC	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	15
BspTNI	GGTCTC	2 cut(s)	94, 158
BsrI	ACTGG	2 cut(s)	18, 38
BssECI	CCNNGG	4 cut(s)	113, 216, 426, 521
BssMI	GATC	1 cut(s)	34
BssSI	CACGAG	1 cut(s)	470
BssT1I	CCWWGG	2 cut(s)	113, 521
Bst2BI	CACGAG	1 cut(s)	470
Bst4CI	ACNGT	3 cut(s)	86, 430, 614
Bst6I	CTCTTC	3 cut(s)	15, 193, 737
BstC8I	GCNNGC	4 cut(s)	202, 657, 697, 796
BstDSI	CCRYGG	4 cut(s)	113, 216, 426, 521
BstF5I	GGATG	5 cut(s)	313, 349, 411, 597, 779
BstFNI	CGCG	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	2 cut(s)	94, 158
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	7 cut(s)	692, 716, 749, 752, 755, 758, 764
BstSLI	GKGCMC	1 cut(s)	471
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	7 cut(s)	76, 306, 309, 535, 730, 742, 764
BstXI	CCANNNNNNTGG	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	5 cut(s)	363, 534, 686, 699, 798
BtgI	CCRYGG	4 cut(s)	113, 216, 426, 521
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	5 cut(s)	313, 349, 411, 597, 779
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	3 cut(s)	567, 619, 779
Cac8I	GCNNGC	4 cut(s)	202, 657, 697, 796
CfoI	GCGC	1 cut(s)	655
Cfr42I	CCGCGG	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	21, 451
CspCI	CAANNNNNGTGG	2 cut(s)	231, 266
CviAII	CATG	2 cut(s)	114, 522
CviQI	GTAC	2 cut(s)	21, 451
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	15, 193, 737
EarI	CTCTTC	3 cut(s)	15, 193, 737
EciI	GGCGGA	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	113, 521
Eco31I	GGTCTC	2 cut(s)	94, 158
Eco32I	GATATC	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	264
EcoT14I	CCWWGG	2 cut(s)	113, 521
ErhI	CCWWGG	2 cut(s)	113, 521
FaeI	CATG	2 cut(s)	117, 525
FaiI	YATR	9 cut(s)	115, 129, 147, 269, 489, 523, 708, 765, 791
FatI	CATG	2 cut(s)	113, 521
FokI	GGATG	5 cut(s)	320, 356, 418, 584, 786
FspBI	CTAG	4 cut(s)	24, 93, 233, 800
GlaI	GCGC	1 cut(s)	654
HaeIII	GGCC	5 cut(s)	363, 534, 686, 699, 798
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	2 cut(s)	117, 525
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	1 cut(s)	727
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	49, 469
Hpy188III	TCNNGA	2 cut(s)	99, 155
Hpy8I	GTNNAC	2 cut(s)	49, 469
HpyAV	CCTTC	3 cut(s)	486, 562, 797
HpyCH4III	ACNGT	3 cut(s)	86, 430, 614
HpyCH4IV	ACGT	2 cut(s)	222, 411
HpyCH4V	TGCA	4 cut(s)	242, 469, 659, 695
HpyF10VI	GCNNNNNNNGC	7 cut(s)	692, 716, 749, 752, 755, 758, 764
HpySE526I	ACGT	2 cut(s)	222, 411
Hsp92II	CATG	2 cut(s)	117, 525
HspAI	GCGC	1 cut(s)	653
KspI	CCGCGG	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	34
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	2 cut(s)	387, 577
Lsp1109I	GCAGC	7 cut(s)	76, 306, 309, 535, 730, 742, 764
LweI	GCATC	2 cut(s)	148, 409
MaeI	CTAG	4 cut(s)	24, 93, 233, 800
MaeII	ACGT	2 cut(s)	222, 411
MaeIII	GTNAC	6 cut(s)	166, 331, 346, 538, 614, 724
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	7 cut(s)	71, 74, 180, 382, 518, 538, 724
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	2 cut(s)	256, 751
MnlI	CCTC	3 cut(s)	585, 605, 656
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	2 cut(s)	218, 755
Mva1269I	GAATGC	1 cut(s)	138
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	7 cut(s)	692, 716, 749, 752, 755, 758, 764
NcoI	CCATGG	2 cut(s)	113, 521
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	117, 525
NmuCI	GTSAC	5 cut(s)	166, 331, 346, 614, 724
PciSI	GCTCTTC	1 cut(s)	15
PctI	GAATGC	1 cut(s)	138
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	2 cut(s)	22, 452
RsaNI	GTAC	2 cut(s)	21, 451
RseI	CAYNNNNRTG	1 cut(s)	464
SacII	CCGCGG	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	624
Sau3AI	GATC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	22
SchI	GAGTC	1 cut(s)	721
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	6 cut(s)	77, 225, 414, 757, 796, 808
SfaNI	GCATC	2 cut(s)	148, 409
Sfr303I	CCGCGG	1 cut(s)	219
SgrBI	CCGCGG	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	1 cut(s)	675
SspMI	CTAG	4 cut(s)	24, 93, 233, 800
StyI	CCWWGG	2 cut(s)	113, 521
TaaI	ACNGT	3 cut(s)	86, 430, 614
TaiI	ACGT	2 cut(s)	225, 414
TaqI	TCGA	2 cut(s)	98, 156
TasI	AATT	1 cut(s)	675
TatI	WGTACW	2 cut(s)	20, 450
TauI	GCSGC	6 cut(s)	317, 363, 425, 749, 752, 761
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	3 cut(s)	574, 619, 786
TseFI	GTSAC	5 cut(s)	166, 331, 346, 614, 724
TseI	GCWGC	8 cut(s)	5, 89, 294, 297, 548, 743, 752, 755
Tsp45I	GTSAC	5 cut(s)	166, 331, 346, 614, 724
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	3 cut(s)	574, 619, 786
VneI	GTGCAC	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	111
XspI	CTAG	4 cut(s)	24, 93, 233, 800
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.