FvH4_7g15550

Delta(8)-fatty-acid desaturase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
13443642 .. 13446894
3253 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15550.t2

Sequence Viewer

Length: 1356 bp
ATGGAGGAGAAGATGGAGGTTGAGAGGAAGTATATTACTGTTGAGGAGCTGAAGCTGCACAACAAGCCTGGGGATCTTTGGATCTCTATCCAGGGCAAGATTTACAATGTCTCAGATTGGGTTAATGACCACCCAGGTGGAGCTACCATTCTGTACGATTTGGGTGGTCAAGATGTTACTGATGGATTCATGGCCTACCATCCTAGCACAGTGTGGAAGCGCCTAGGGAAGTACTTCAATGGATATCATCTCAAGGATTTTGAGATCTCGGAGGCGTCCAAGGACTACAGGAAGCTTCATGCTGAGATTACGCAGATGGGTTTGTTTGAAAACAAAGGGCATGGGGCTCTTTACAATATTACAACTATTGTTGTTTTGCTTTACCTTGTTGTGTATGGTGTGTTGAAGTCTGATAGTGTGTTGGTTCATTTTGTTTGTGCTGTGATGTTGGGGGTCCTGTGGATTATGGGGGCCTATATGGGACATGATGCGGGTCATTACCAAGTCATGGCGAGCCGTAAGTGGAACCAAATTATTCAGGTTCTGGCTGGGAATTGCCTTACTGGGATTAGCATTGCTTGGTGGAAATGGACTCACAATCAGCATCATATTGCCTGCAACAGCCTCGACTATGATCCTGATCTTCAACACATGCCGGTCTTTGCTGTGTCCACAAAGTTCTTTCATTCGCTTACTTCGGTCTTTTATGGAAGGAAGATGGATTTTGATCATGTGGCTAGGTTTTTAGTTAGCCATCAGCATCTTACTTATTATCCTATCATGATTGTTGGAAGGGTCAACTTATTTATTCAGACCTTCTTGTTGTTGTCATCCAAGAGAAGCATCCCCAATAGGACTTTGAACATAATTGGAATCCTTTTTTTCTGGACTTGGTTTCCTCTCCTTGTTATGTGTCTTCCTAGTTGGACTGAGAGGGTGATGTTCGTGCTTGTGAGCTTCACAGTGACAGCACTTCAGCACATTCAGTTCACTTTGAACCATTTTTCAGGAGATACTTACCTTGGACCACCTACTGGAAATGATTGGTTTGAGAAGCAGGCTGCTGGAACCATTGATATTTCGTGCTCAAAGTACATGGACTGGTTCTTTGGTGGTCTGCAGTTTCAGCTAGAGCACCATTTGTTCCCCCGATTACCCCGATGCCAACTGAGGACAGTTTCTCCAACCGTGAAGGAACTATGCAAGAAGCACAATTTGCCTCACAGGAGCTTGTCCTTCTGGGATGCCAATGTGACCACCATTAGAGTTCTCAGGAAAGCTGCCCTGCAGGCTTGGGACATGACCCTTCCTGTCCCGAAGAACTTGGCGTGGGAAGCTATTAACACCCATGGCTGA

Protein Analysis

452

Amino Acids

52.03

Weight (kDa)

8.52

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 13 - 82 4.8e-21 Cytochrome b5-like Heme/Steroid binding domain
FA_desaturase PF00487 141 - 410 5.4e-33 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 508, 1034
AciI CCGC 1 cut(s) 491
AclWI GGATC 3 cut(s) 81, 89, 629
AcuI CTGAAG 2 cut(s) 71, 959
AcyI GRCGYC 1 cut(s) 275
AdeI CACNNNGTG 1 cut(s) 213
AfaI GTAC 3 cut(s) 155, 233, 1094
AfiI CCNNNNNNNGG 2 cut(s) 508, 1034
AgsI TTSAA 6 cut(s) 238, 329, 406, 647, 862, 997
AjnI CCWGG 3 cut(s) 67, 90, 133
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 9 cut(s) 49, 55, 143, 295, 957, 1129, 1230, 1280, 1337
AluI AGCT 9 cut(s) 49, 55, 143, 295, 957, 1129, 1230, 1280, 1337
Alw21I GWGCWC 2 cut(s) 1088, 1137
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 3 cut(s) 81, 89, 629
AlwNI CAGNNNCTG 1 cut(s) 544
AoxI GGCC 2 cut(s) 192, 471
ApeKI GCWGC 3 cut(s) 55, 1061, 1280
ArsI GACNNNNNNTTYG 2 cut(s) 1091, 1123
Asp700I GAANNNNTTC 1 cut(s) 233
AspA2I CCTAGG 1 cut(s) 223
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 3 cut(s) 454, 471, 1025
AsuHPI GGTGA 1 cut(s) 949
AvaII GGWCC 2 cut(s) 454, 1025
AvrII CCTAGG 1 cut(s) 223
BanII GRGCYC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 908
Bbv12I GWGCWC 2 cut(s) 1088, 1137
BbvI GCAGC 3 cut(s) 42, 1048, 1267
BccI CCATC 6 cut(s) 7, 176, 207, 310, 712, 762
BceAI ACGGC 1 cut(s) 501
BcgI CGANNNNNNTGC 2 cut(s) 607, 641
BciT130I CCWGG 3 cut(s) 69, 92, 135
BclI TGATCA 1 cut(s) 727
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 5 cut(s) 204, 224, 738, 921, 1130
BfmI CTRYAG 3 cut(s) 286, 1118, 1286
BfoI RGCGCY 1 cut(s) 223
BglI GCCNNNNNGGC 1 cut(s) 1289
BglII AGATCT 1 cut(s) 264
BisI GCNGC 3 cut(s) 56, 1062, 1281
BlnI CCTAGG 1 cut(s) 223
BlsI GCNGC 3 cut(s) 57, 1063, 1282
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 3 cut(s) 69, 92, 135
Bme18I GGWCC 2 cut(s) 454, 1025
BmgT120I GGNCC 3 cut(s) 454, 471, 1025
BmiI GGNNCC 4 cut(s) 455, 472, 527, 1069
BmrFI CCNGG 3 cut(s) 69, 92, 135
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 6 cut(s) 478, 613, 769, 852, 1151, 1234
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 908
BpuEI CTTGAG 1 cut(s) 236
BsaBI GATNNNNATC 3 cut(s) 86, 639, 726
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 7 cut(s) 68, 91, 133, 223, 279, 1021, 1348
BsaXI ACNNNNNCTCC 2 cut(s) 1165, 1195
Bsc4I CCNNNNNNNGG 2 cut(s) 508, 1034
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 3 cut(s) 568, 1039, 1106
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 3 cut(s) 86, 639, 726
BseBI CCWGG 3 cut(s) 69, 92, 135
BseDI CCNNGG 7 cut(s) 68, 91, 133, 223, 279, 1021, 1348
BseGI GGATG 4 cut(s) 199, 830, 843, 1249
BseJI GATNNNNATC 3 cut(s) 86, 639, 726
BseLI CCNNNNNNNGG 2 cut(s) 508, 1034
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 5 cut(s) 126, 294, 921, 1160, 1285
BseNI ACTGG 3 cut(s) 568, 1039, 1106
BseRI GAGGAG 2 cut(s) 20, 59
BseXI GCAGC 3 cut(s) 42, 1048, 1267
BseYI CCCAGC 1 cut(s) 548
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 2 cut(s) 194, 473
BsiHKAI GWGCWC 2 cut(s) 1088, 1137
BsiSI CCGG 1 cut(s) 656
BslFI GGGAC 3 cut(s) 495, 1298, 1310
BslI CCNNNNNNNGG 2 cut(s) 508, 1034
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 3 cut(s) 495, 1298, 1310
BsnI GGCC 2 cut(s) 194, 473
Bsp1286I GDGCHC 3 cut(s) 349, 1088, 1137
Bsp143I GATC 6 cut(s) 73, 81, 264, 634, 640, 727
Bsp19I CCATGG 1 cut(s) 1348
BspACI CCGC 1 cut(s) 491
BspANI GGCC 2 cut(s) 194, 473
BspCNI CTCAG 5 cut(s) 125, 295, 922, 1161, 1284
BspHI TCATGA 1 cut(s) 780
BspLI GGNNCC 4 cut(s) 455, 472, 527, 1069
BspMAI CTGCAG 2 cut(s) 1122, 1290
BspPI GGATC 3 cut(s) 81, 89, 629
BsrDI GCAATG 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 655
BsrI ACTGG 3 cut(s) 568, 1039, 1106
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 7 cut(s) 68, 91, 133, 223, 279, 1021, 1348
BssMI GATC 6 cut(s) 73, 81, 264, 634, 640, 727
BssNI GRCGYC 1 cut(s) 275
BssT1I CCWWGG 4 cut(s) 223, 279, 1021, 1348
Bst2UI CCWGG 3 cut(s) 69, 92, 135
Bst4CI ACNGT 5 cut(s) 40, 211, 964, 1177, 1189
BstACI GRCGYC 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 1216
BstC8I GCNNGC 4 cut(s) 514, 616, 1059, 1290
BstDEI CTNAG 5 cut(s) 112, 303, 930, 1169, 1271
BstDSI CCRYGG 1 cut(s) 1348
BstF5I GGATG 4 cut(s) 199, 830, 843, 1249
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 6 cut(s) 76, 84, 267, 637, 643, 730
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 6 cut(s) 73, 81, 264, 634, 640, 727
BstMWI GCNNNNNNNGC 6 cut(s) 55, 64, 1126, 1216, 1289, 1334
BstNI CCWGG 3 cut(s) 69, 92, 135
BstNSI RCATGY 1 cut(s) 655
BstSCI CCNGG 3 cut(s) 67, 90, 133
BstSFI CTRYAG 3 cut(s) 286, 1118, 1286
BstV1I GCAGC 3 cut(s) 42, 1048, 1267
BstV2I GAAGAC 1 cut(s) 908
BstX2I RGATCY 3 cut(s) 73, 81, 264
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 3 cut(s) 73, 81, 264
BsuRI GGCC 2 cut(s) 194, 473
BtgI CCRYGG 1 cut(s) 1348
BtsCI GGATG 4 cut(s) 199, 830, 843, 1249
BtsIMutI CAGTG 2 cut(s) 216, 969
Cac8I GCNNGC 4 cut(s) 514, 616, 1059, 1290
CaiI CAGNNNCTG 1 cut(s) 544
CciI TCATGA 1 cut(s) 780
CfoI GCGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 3 cut(s) 454, 471, 1025
CseI GACGC 1 cut(s) 264
Csp6I GTAC 3 cut(s) 154, 232, 1093
CviQI GTAC 3 cut(s) 154, 232, 1093
DdeI CTNAG 5 cut(s) 112, 303, 930, 1169, 1271
DpnI GATC 6 cut(s) 75, 83, 266, 636, 642, 729
DpnII GATC 6 cut(s) 73, 81, 264, 634, 640, 727
DraIII CACNNNGTG 1 cut(s) 213
Eco130I CCWWGG 4 cut(s) 223, 279, 1021, 1348
Eco24I GRGCYC 1 cut(s) 349
Eco32I GATATC 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 454, 1025
Eco57I CTGAAG 2 cut(s) 71, 959
EcoO109I RGGNCCY 2 cut(s) 454, 471
EcoRII CCWGG 3 cut(s) 67, 90, 133
EcoRV GATATC 1 cut(s) 245
EcoT14I CCWWGG 4 cut(s) 223, 279, 1021, 1348
EcoT38I GRGCYC 1 cut(s) 349
ErhI CCWWGG 4 cut(s) 223, 279, 1021, 1348
FaqI GGGAC 3 cut(s) 495, 1298, 1310
FauI CCCGC 1 cut(s) 484
FbaI TGATCA 1 cut(s) 727
Fnu4HI GCNGC 3 cut(s) 56, 1062, 1281
FokI GGATG 4 cut(s) 186, 817, 830, 1256
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 3 cut(s) 56, 1062, 1281
FspBI CTAG 5 cut(s) 204, 224, 738, 921, 1130
GlaI GCGC 1 cut(s) 221
GluI GCNGC 3 cut(s) 56, 1062, 1281
GsaI CCCAGC 1 cut(s) 552
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 2 cut(s) 194, 473
HapII CCGG 1 cut(s) 656
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 275
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 3 cut(s) 186, 592, 873
HpaII CCGG 1 cut(s) 656
HphI GGTGA 1 cut(s) 949
Hpy166II GTNNAC 3 cut(s) 672, 799, 990
Hpy188I TCNGA 4 cut(s) 115, 271, 412, 813
Hpy188III TCNNGA 7 cut(s) 170, 638, 781, 886, 1008, 1273, 1315
Hpy8I GTNNAC 3 cut(s) 672, 799, 990
HpyAV CCTTC 6 cut(s) 705, 786, 826, 1186, 1246, 1316
HpyCH4III ACNGT 5 cut(s) 40, 211, 964, 1177, 1189
HpyCH4V TGCA 5 cut(s) 58, 618, 1120, 1203, 1288
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 64, 1126, 1216, 1289, 1334
HpyF3I CTNAG 5 cut(s) 112, 303, 930, 1169, 1271
Hsp92I GRCGYC 1 cut(s) 275
HspAI GCGC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 6 cut(s) 73, 81, 264, 634, 640, 727
LmnI GCTCC 3 cut(s) 46, 140, 1227
Lsp1109I GCAGC 3 cut(s) 42, 1048, 1267
LweI GCATC 6 cut(s) 478, 613, 769, 852, 1151, 1234
MaeI CTAG 5 cut(s) 204, 224, 738, 921, 1130
MaeIII GTNAC 3 cut(s) 175, 964, 1252
MalI GATC 6 cut(s) 75, 83, 266, 636, 642, 729
MboI GATC 6 cut(s) 73, 81, 264, 634, 640, 727
MboII GAAGA 5 cut(s) 22, 635, 727, 908, 1330
MflI RGATCY 3 cut(s) 73, 81, 264
MhlI GDGCHC 3 cut(s) 349, 1088, 1137
MluCI AATT 4 cut(s) 531, 553, 867, 1213
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 3 cut(s) 769, 905, 1208
MnlI CCTC 9 cut(s) 10, 18, 37, 265, 635, 909, 927, 1164, 1230
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 2 cut(s) 123, 1341
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 656
MspR9I CCNGG 3 cut(s) 69, 92, 135
MvaI CCWGG 3 cut(s) 69, 92, 135
MwoI GCNNNNNNNGC 6 cut(s) 55, 64, 1126, 1216, 1289, 1334
NcoI CCATGG 1 cut(s) 1348
NdeII GATC 6 cut(s) 73, 81, 264, 634, 640, 727
NlaIV GGNNCC 4 cut(s) 455, 472, 527, 1069
NmuCI GTSAC 2 cut(s) 964, 1252
NspI RCATGY 1 cut(s) 655
OliI CACNNNNGTG 1 cut(s) 135
PagI TCATGA 1 cut(s) 780
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 186, 873
PflMI CCANNNNNTGG 2 cut(s) 508, 1034
PkrI GCNGC 3 cut(s) 57, 1063, 1282
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 454
Psp5II RGGWCCY 1 cut(s) 454
Psp6I CCWGG 3 cut(s) 67, 90, 133
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 3 cut(s) 67, 90, 133
PspN4I GGNNCC 4 cut(s) 455, 472, 527, 1069
PspPI GGNCC 3 cut(s) 454, 471, 1025
PspPPI RGGWCCY 1 cut(s) 454
PstI CTGCAG 2 cut(s) 1122, 1290
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 3 cut(s) 73, 81, 264
RsaI GTAC 3 cut(s) 155, 233, 1094
RsaNI GTAC 3 cut(s) 154, 232, 1093
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 2 cut(s) 123, 1341
SatI GCNGC 3 cut(s) 56, 1062, 1281
Sau3AI GATC 6 cut(s) 73, 81, 264, 634, 640, 727
Sau96I GGNCC 3 cut(s) 454, 471, 1025
SbfI CCTGCAGG 1 cut(s) 1290
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 3 cut(s) 69, 92, 135
SdaI CCTGCAGG 1 cut(s) 1290
SduI GDGCHC 3 cut(s) 349, 1088, 1137
SfaNI GCATC 6 cut(s) 478, 613, 769, 852, 1151, 1234
SfcI CTRYAG 3 cut(s) 286, 1118, 1286
SinI GGWCC 2 cut(s) 454, 1025
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse8387I CCTGCAGG 1 cut(s) 1290
Sse9I AATT 4 cut(s) 531, 553, 867, 1213
SsiI CCGC 1 cut(s) 491
SspI AATATT 1 cut(s) 358
SspMI CTAG 5 cut(s) 204, 224, 738, 921, 1130
StyD4I CCNGG 3 cut(s) 67, 90, 133
StyI CCWWGG 4 cut(s) 223, 279, 1021, 1348
TaaI ACNGT 5 cut(s) 40, 211, 964, 1177, 1189
TaqI TCGA 1 cut(s) 627
TaqII GACCGA 1 cut(s) 688
TasI AATT 4 cut(s) 531, 553, 867, 1213
TatI WGTACW 2 cut(s) 231, 1092
TfiI GAWTC 2 cut(s) 186, 873
Tru1I TTAA 2 cut(s) 123, 1341
Tru9I TTAA 2 cut(s) 123, 1341
TscAI CASTG 2 cut(s) 216, 969
TseFI GTSAC 2 cut(s) 964, 1252
TseI GCWGC 3 cut(s) 55, 1061, 1280
Tsp45I GTSAC 2 cut(s) 964, 1252
TspDTI ATGAA 4 cut(s) 178, 287, 416, 674
TspRI CASTG 2 cut(s) 216, 969
Van91I CCANNNNNTGG 2 cut(s) 508, 1034
VpaK11BI GGWCC 2 cut(s) 454, 1025
XceI RCATGY 1 cut(s) 655
XmaJI CCTAGG 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 5 cut(s) 204, 224, 738, 921, 1130
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.