pycom01g10200

Delta(8)-fatty-acid desaturase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
11030372 .. 11031654
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10200.1

Sequence Viewer

Length: 1230 bp
ATGGAGGTGGAGAAGAAGTATATTTCTGTAGAGGAGTTGAAGAAGCACAACAAACCTGGAGATTTATGGATCTCTATCCAGGGGAAGGTCTACAATGTCTCCGATTGGGCGAAGGATCACCCCGGCGGTGAAACCATTCTGTACAATCTGGGTGGCCTGGATGTTACAGACGCGTTCATCGCTTACCATCCCGGCACTGCATGGCAGTACCTCAAGAAATTCTCCACCGGAATTTATCTCAAAGATTTCGAGGTCTCCGAAGTGTCGAAAGATTACAGAAGAATGGCAACAGAGTTTTCAAAGGCGGGTTTGTTCGAGAAGAAGGGGCACGGCGCTCTGTGCTCGATCACCATCATTTCAATCATGTTCTGCCTCTCCGTGTACGGAGTTTTGACATCCGACAGCGTTTTGGTGCATTTGATGAGCGGGATGCTTCTGGGGATGTTGTGGATTGAGGGAGCTTACGTCGGACATGATTGTGGGCATTACCAGGTAATGCCAAGCCAACTGTGCAACAACATTGCCCAGATTGTTGCCGGTAATTGCCTCACCGGAATCAGCATTGCCTGGTGGAAGTGGACTCATAATGCCCACCACATTGCCTGCAACAGCCTCGATTACGACCCGGATCTCCAGCACATTCCGGTTTTCGCCGTCTCCACCAAGTTTTTCAATTCGATCACCTCGATTTTTTACGGGAGAGTTTTGACATTTGATCCTCTGGCTAGGTTTTTGGTCAGCTACCAGCACTTTACATATTATCCGGTTATGATGGTGGGGAGGGTTAATTTGTTCATCCAGACATTCTTGCTCTTGTGTTCGAGGCGGGATGTCCCAAACAGAGGATTGAACATCATGGGAATCCTAGTTTTCTGGACATGGTTTCCTCTCCTCGTTTCGTGTTTGCCCAACTGGAGTGAGAGGGTTATGTTTGTGCTGGCAGCATTTGCAGTGACATCGCTCCAGCACATCCAATTCACATTGAATCATTTCTCCGGCGACACCTATCTCGGAGCCCCCAATGGCAATGACTGGTTCGAGAAGCAAGCCGCAGGGACTGTCGATATCTCCTGCTCAACTAAGATGGATTGGTTCTTCGGCGGGCTGCAGTTCCAGCTCGAACATCATTTGTTTCCGCGAATGCCTCGCGGACAACTGAGGAAGATTGCTCCTACTGTGAAGGAGTTGTGCCACACTCAGGACTCTAAGGACCGCTGCCCTCCAGGCTAG

Protein Analysis

410

Amino Acids

46.43

Weight (kDa)

7.25

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 10 - 77 9.8e-23 Cytochrome b5-like Heme/Steroid binding domain
FA_desaturase PF00487 138 - 401 2.8e-31 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 426
AccI GTMKAC 1 cut(s) 90
AccII CGCG 3 cut(s) 173, 1138, 1149
AciI CCGC 9 cut(s) 126, 305, 426, 826, 1050, 1101, 1136, 1149, 1213
AclWI GGATC 4 cut(s) 77, 123, 636, 710
AcsI RAATTY 2 cut(s) 218, 231
AfaI GTAC 3 cut(s) 143, 209, 383
AfiI CCNNNNNNNGG 3 cut(s) 85, 842, 1198
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 6 cut(s) 40, 300, 360, 673, 850, 985
AjnI CCWGG 6 cut(s) 55, 78, 156, 489, 566, 1222
AluBI AGCT 3 cut(s) 461, 741, 1117
AluI AGCT 3 cut(s) 461, 741, 1117
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 3 cut(s) 103, 259, 661
AlwI GGATC 4 cut(s) 77, 123, 636, 710
AlwNI CAGNNNCTG 1 cut(s) 1058
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 941, 1105, 1215
ApoI RAATTY 2 cut(s) 218, 231
Asp700I GAANNNNTTC 2 cut(s) 135, 989
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 1210
AsuC2I CCSGG 3 cut(s) 123, 192, 626
AsuHPI GGTGA 5 cut(s) 110, 140, 340, 541, 673
AvaII GGWCC 1 cut(s) 1210
BaeGI GKGCMC 1 cut(s) 330
BanII GRGCYC 1 cut(s) 1018
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 3 cut(s) 953, 1092, 1202
BccI CCATC 4 cut(s) 195, 359, 766, 1078
BceAI ACGGC 2 cut(s) 346, 638
BcgI CGANNNNNNTGC 4 cut(s) 595, 629, 939, 973
BciT130I CCWGG 6 cut(s) 57, 80, 158, 491, 568, 1224
BcnI CCSGG 3 cut(s) 123, 192, 626
BcoDI GTCTC 3 cut(s) 103, 259, 661
BfaI CTAG 3 cut(s) 726, 866, 1228
BfmI CTRYAG 2 cut(s) 27, 1106
BfoI RGCGCY 1 cut(s) 336
BglI GCCNNNNNGGC 1 cut(s) 1224
BisI GCNGC 4 cut(s) 942, 1050, 1106, 1216
BlsI GCNGC 4 cut(s) 943, 1051, 1107, 1217
Bme1390I CCNGG 9 cut(s) 57, 80, 123, 158, 192, 491, 568, 626, 1224
Bme18I GGWCC 1 cut(s) 1210
BmgT120I GGNCC 1 cut(s) 1210
BmiI GGNNCC 1 cut(s) 1015
BmrFI CCNGG 9 cut(s) 57, 80, 123, 158, 192, 491, 568, 626, 1224
BmsI GCATC 1 cut(s) 420
BpmI CTGGAG 5 cut(s) 78, 617, 934, 947, 1206
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 3 cut(s) 123, 192, 626
BsaBI GATNNNNATC 2 cut(s) 74, 350
BsaI GGTCTC 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 79, 121
BsaWI WCCGGW 4 cut(s) 227, 551, 643, 763
BsaXI ACNNNNNCTCC 5 cut(s) 32, 83, 113, 450, 480
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 842, 1198
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 2 cut(s) 917, 1037
Bse3DI GCAATG 4 cut(s) 519, 561, 597, 1033
Bse8I GATNNNNATC 2 cut(s) 74, 350
BseBI CCWGG 6 cut(s) 57, 80, 158, 491, 568, 1224
BseDI CCNNGG 2 cut(s) 79, 121
BseGI GGATG 8 cut(s) 166, 187, 395, 435, 447, 795, 835, 969
BseJI GATNNNNATC 2 cut(s) 74, 350
BseLI CCNNNNNNNGG 3 cut(s) 85, 842, 1198
BseMI GCAATG 4 cut(s) 519, 561, 597, 1033
BseMII CTCAG 2 cut(s) 1148, 1211
BseNI ACTGG 2 cut(s) 917, 1037
BseRI GAGGAG 2 cut(s) 47, 881
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 3 cut(s) 953, 1092, 1202
Bsh1236I CGCG 3 cut(s) 173, 1138, 1149
BshFI GGCC 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 9 cut(s) 123, 192, 228, 537, 552, 626, 644, 764, 996
BslFI GGGAC 2 cut(s) 818, 1069
BslI CCNNNNNNNGG 3 cut(s) 85, 842, 1198
BsmAI GTCTC 3 cut(s) 103, 259, 661
BsmBI CGTCTC 1 cut(s) 661
BsmFI GGGAC 2 cut(s) 818, 1069
BsmI GAATGC 1 cut(s) 1146
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 259
Bsp1286I GDGCHC 3 cut(s) 330, 344, 1018
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 6 cut(s) 69, 115, 345, 628, 678, 715
BspACI CCGC 9 cut(s) 126, 305, 426, 826, 1050, 1101, 1136, 1149, 1213
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 1149, 1210
BspFNI CGCG 3 cut(s) 173, 1138, 1149
BspLI GGNNCC 1 cut(s) 1015
BspMAI CTGCAG 1 cut(s) 1110
BspPI GGATC 4 cut(s) 77, 123, 636, 710
BspTNI GGTCTC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 426
BsrDI GCAATG 4 cut(s) 519, 561, 597, 1033
BsrFI RCCGGY 1 cut(s) 536
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 2 cut(s) 917, 1037
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 2 cut(s) 79, 121
BssMI GATC 6 cut(s) 69, 115, 345, 628, 678, 715
Bst2UI CCWGG 6 cut(s) 57, 80, 158, 491, 568, 1224
Bst4CI ACNGT 3 cut(s) 510, 1060, 1177
BstAPI GCANNNNNTGC 1 cut(s) 947
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 4 cut(s) 604, 939, 1047, 1103
BstDEI CTNAG 4 cut(s) 1080, 1157, 1197, 1206
BstF5I GGATG 8 cut(s) 166, 187, 395, 435, 447, 795, 835, 969
BstFNI CGCG 3 cut(s) 173, 1138, 1149
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 6 cut(s) 72, 118, 348, 631, 681, 718
BstMAI GTCTC 3 cut(s) 103, 259, 661
BstMBI GATC 6 cut(s) 69, 115, 345, 628, 678, 715
BstMWI GCNNNNNNNGC 6 cut(s) 179, 339, 510, 947, 1114, 1224
BstNI CCWGG 6 cut(s) 57, 80, 158, 491, 568, 1224
BstSCI CCNGG 9 cut(s) 55, 78, 121, 156, 190, 489, 566, 624, 1222
BstSFI CTRYAG 2 cut(s) 27, 1106
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 3 cut(s) 173, 1138, 1149
BstV1I GCAGC 3 cut(s) 953, 1092, 1202
BstX2I RGATCY 2 cut(s) 69, 628
BstYI RGATCY 2 cut(s) 69, 628
BsuRI GGCC 1 cut(s) 156
BtgZI GCGATG 2 cut(s) 163, 942
BtsCI GGATG 8 cut(s) 166, 187, 395, 435, 447, 795, 835, 969
BtsI GCAGTG 2 cut(s) 195, 957
BtsIMutI CAGTG 2 cut(s) 195, 957
Cac8I GCNNGC 4 cut(s) 604, 939, 1047, 1103
CaiI CAGNNNCTG 1 cut(s) 1058
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 1 cut(s) 1210
CseI GACGC 1 cut(s) 179
CsiI ACCWGGT 1 cut(s) 489
Csp6I GTAC 3 cut(s) 142, 208, 382
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 5 cut(s) 201, 364, 473, 856, 879
CviQI GTAC 3 cut(s) 142, 208, 382
DdeI CTNAG 4 cut(s) 1080, 1157, 1197, 1206
DpnI GATC 6 cut(s) 71, 117, 347, 630, 680, 717
DpnII GATC 6 cut(s) 69, 115, 345, 628, 678, 715
Eco24I GRGCYC 1 cut(s) 1018
Eco31I GGTCTC 1 cut(s) 259
Eco32I GATATC 1 cut(s) 1066
Eco47I GGWCC 1 cut(s) 1210
EcoRII CCWGG 6 cut(s) 55, 78, 156, 489, 566, 1222
EcoRV GATATC 1 cut(s) 1066
EcoT38I GRGCYC 1 cut(s) 1018
Esp3I CGTCTC 1 cut(s) 661
FaeI CATG 5 cut(s) 204, 367, 476, 859, 882
FaqI GGGAC 2 cut(s) 818, 1069
FatI CATG 5 cut(s) 200, 363, 472, 855, 878
FauI CCCGC 4 cut(s) 298, 419, 819, 1094
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 942, 1050, 1106, 1216
FokI GGATG 8 cut(s) 173, 174, 382, 442, 454, 782, 842, 956
FriOI GRGCYC 1 cut(s) 1018
Fsp4HI GCNGC 4 cut(s) 942, 1050, 1106, 1216
FspBI CTAG 3 cut(s) 726, 866, 1228
GlaI GCGC 1 cut(s) 334
GluI GCNGC 4 cut(s) 942, 1050, 1106, 1216
GsuI CTGGAG 5 cut(s) 78, 617, 934, 947, 1206
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 1 cut(s) 156
HapII CCGG 9 cut(s) 123, 192, 228, 537, 552, 626, 644, 764, 996
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 335
Hin1II CATG 5 cut(s) 204, 367, 476, 859, 882
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HinfI GANTC 5 cut(s) 555, 580, 861, 985, 1202
HpaII CCGG 9 cut(s) 123, 192, 228, 537, 552, 626, 644, 764, 996
HphI GGTGA 5 cut(s) 110, 140, 340, 541, 673
Hpy166II GTNNAC 3 cut(s) 91, 382, 579
Hpy188I TCNGA 5 cut(s) 103, 259, 400, 470, 1013
Hpy188III TCNNGA 6 cut(s) 214, 316, 799, 874, 1039, 1199
Hpy8I GTNNAC 3 cut(s) 91, 382, 579
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 4 cut(s) 79, 106, 316, 1174
HpyCH4III ACNGT 3 cut(s) 510, 1060, 1177
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 6 cut(s) 200, 415, 513, 606, 950, 1108
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 339, 510, 947, 1114, 1224
HpyF3I CTNAG 4 cut(s) 1080, 1157, 1197, 1206
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 5 cut(s) 204, 367, 476, 859, 882
HspAI GCGC 1 cut(s) 333
Kzo9I GATC 6 cut(s) 69, 115, 345, 628, 678, 715
LmnI GCTCC 4 cut(s) 458, 966, 1013, 1174
Lsp1109I GCAGC 3 cut(s) 953, 1092, 1202
LweI GCATC 1 cut(s) 420
MabI ACCWGGT 1 cut(s) 489
MaeI CTAG 3 cut(s) 726, 866, 1228
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 163, 952
MalI GATC 6 cut(s) 71, 117, 347, 630, 680, 717
MbiI CCGCTC 1 cut(s) 426
MboI GATC 6 cut(s) 69, 115, 345, 628, 678, 715
MboII GAAGA 6 cut(s) 25, 52, 291, 331, 1087, 1174
MflI RGATCY 2 cut(s) 69, 628
MhlI GDGCHC 3 cut(s) 330, 344, 1018
MluCI AATT 6 cut(s) 218, 231, 541, 673, 787, 974
MluI ACGCGT 1 cut(s) 171
MlyI GAGTC 2 cut(s) 574, 1196
MmeI TCCRAC 2 cut(s) 423, 448
MroXI GAANNNNTTC 2 cut(s) 135, 989
MseI TTAA 1 cut(s) 786
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 1215
MspI CCGG 9 cut(s) 123, 192, 228, 537, 552, 626, 644, 764, 996
MspR9I CCNGG 9 cut(s) 57, 80, 123, 158, 192, 491, 568, 626, 1224
Mva1269I GAATGC 1 cut(s) 1146
MvaI CCWGG 6 cut(s) 57, 80, 158, 491, 568, 1224
MvnI CGCG 3 cut(s) 173, 1138, 1149
MwoI GCNNNNNNNGC 6 cut(s) 179, 339, 510, 947, 1114, 1224
NciI CCSGG 3 cut(s) 123, 192, 626
NdeII GATC 6 cut(s) 69, 115, 345, 628, 678, 715
NlaIII CATG 5 cut(s) 204, 367, 476, 859, 882
NlaIV GGNNCC 1 cut(s) 1015
NmuCI GTSAC 1 cut(s) 952
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 683
PctI GAATGC 1 cut(s) 1146
PdmI GAANNNNTTC 2 cut(s) 135, 989
PfeI GAWTC 3 cut(s) 555, 861, 985
PkrI GCNGC 4 cut(s) 943, 1051, 1107, 1217
PleI GAGTC 2 cut(s) 574, 1196
PpsI GAGTC 2 cut(s) 574, 1196
Psp6I CCWGG 6 cut(s) 55, 78, 156, 489, 566, 1222
PspGI CCWGG 6 cut(s) 55, 78, 156, 489, 566, 1222
PspN4I GGNNCC 1 cut(s) 1015
PspPI GGNCC 1 cut(s) 1210
PstI CTGCAG 1 cut(s) 1110
PstNI CAGNNNCTG 1 cut(s) 1058
PsuI RGATCY 2 cut(s) 69, 628
RsaI GTAC 3 cut(s) 143, 209, 383
RsaNI GTAC 3 cut(s) 142, 208, 382
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 1 cut(s) 786
SatI GCNGC 4 cut(s) 942, 1050, 1106, 1216
Sau3AI GATC 6 cut(s) 69, 115, 345, 628, 678, 715
Sau96I GGNCC 1 cut(s) 1210
SchI GAGTC 2 cut(s) 574, 1196
ScrFI CCNGG 9 cut(s) 57, 80, 123, 158, 192, 491, 568, 626, 1224
SduI GDGCHC 3 cut(s) 330, 344, 1018
SexAI ACCWGGT 1 cut(s) 489
SfaNI GCATC 1 cut(s) 420
SfcI CTRYAG 2 cut(s) 27, 1106
SinI GGWCC 1 cut(s) 1210
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 6 cut(s) 218, 231, 541, 673, 787, 974
SsiI CCGC 9 cut(s) 126, 305, 426, 826, 1050, 1101, 1136, 1149, 1213
SspMI CTAG 3 cut(s) 726, 866, 1228
StyD4I CCNGG 9 cut(s) 55, 78, 121, 156, 190, 489, 566, 624, 1222
TaaI ACNGT 3 cut(s) 510, 1060, 1177
TaiI ACGT 1 cut(s) 468
TasI AATT 6 cut(s) 218, 231, 541, 673, 787, 974
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 1052
TfiI GAWTC 3 cut(s) 555, 861, 985
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TscAI CASTG 2 cut(s) 202, 957
TseFI GTSAC 1 cut(s) 952
TseI GCWGC 3 cut(s) 941, 1105, 1215
Tsp45I GTSAC 1 cut(s) 952
TspDTI ATGAA 2 cut(s) 166, 784
TspGWI ACGGA 2 cut(s) 367, 399
TspRI CASTG 2 cut(s) 202, 957
VpaK11BI GGWCC 1 cut(s) 1210
XapI RAATTY 2 cut(s) 218, 231
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 2 cut(s) 135, 989
XspI CTAG 3 cut(s) 726, 866, 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.