Rw1G024450

Delta(8)-fatty-acid desaturase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
50631261 .. 50633905
2645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024450.1

Sequence Viewer

Length: 1356 bp
ATGGAGGAGAAAATGGAGGTTGAGAACAAGTATATTACTGTTGAGGAGCTGAAGCTGCACAACAAGCCTGGGGACCTATGGATCTCTATCCAGGGCAAGATTTACAATGTCTCAGATTGGGTTCATGATCACCCAGGTGGAGCTACCATTTTGTATGATTTGGGTGGCCAAGATGTTACTGATGGATTCATGGCATACCATCCTAGCACTGTGTGGAAGCGCCTCGGGAAGTACTTCAATGGGTATCATCTCAAGGATTTCGAGATCTCAGAGGCGTCCAAGGACTATAGGAAGCTTCATGCTGAGATTACGCAGATGGGTTTGTTCGAAAACAAAGGGCATGGGGCTCTTTACAATATTACAACTATTGTTGTTTTGCTTAACCTTGTTGTTTATGGTGTGTTGAAGTCTGATAGTGTGTTGGTCCATTTTGTTTGTGCTGTGATGTTGGGGATCTTGTGGATTATGGGTGCTTATATGGGTCATGATGCGGGTCATTACCAAGTCATGTCAAGCCGTAAGTGGAACCAAATTATTCAGGTTCTGGCTGGGAATTGCCTTACTGGGATTAGCATTGCTTGGTGGAAATGGACTCACAACGCACATCATATTGCCTGCAACAGCCTGGATTATGATCCTGATCTTCAACACATGCCGGTCTTTGCAGTGTCCACAAAGTTCTTTCATTCGATTACTTCAGTCTTTTATGGGAGGAAGTTGGATTTTGATCATGTGGCTAGGTTCTTAGTCAGCCATCAGCATTTTACTTATTATCCTATCATGATTGTTGGAAGGGTCAACTTGTTTATTCAGACCTTCTTGTTGTTGTTGTCCAAGAGAAGCATCCCCAACAGGACTATGAACATAATGGGAATCCTTGTTTTCTGGACTTGGTTTCCTCTGCTTGTCATGTGTCTGCCCAGTTGGAGTGAGAGGGTGATGTTCGTGCTTGTGAGCTTTGCAGTGACAGCACTTCAGCACATTCAGTTCACTTTGAACCATTTCTCAGGAGATACTTATCTTGGACCACCAACTGGGAATGATTGGTTCGAGAAGCAGACTGCTGGAACCATTGATATTTCGTGCTCAAAGTACATGGATTGGTTCTTTGGTGGTCTGCAGTTTCAGCTGGAGCACCATTTGTTCCCCCGATTACCCCGATGCCAACTGAGGACGGTTTCTCCAACCGTGAAGGAACTATGCAAGAAGCACAAGTTGCCTCACAGAAGCTTGTCCTTCTGGGATGCCAATGTGACCACCATTAGGGTTCTCAGGAAAGCTGCCCTGCAGGCTTGGGACATGACCCTTCCTGTCCCGAAGAACTTGGCTTGGGAAGCTATTAATACCCATGGCTAA

Protein Analysis

451

Amino Acids

51.97

Weight (kDa)

8.52

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 13 - 82 6.3e-21 Cytochrome b5-like Heme/Steroid binding domain
FA_desaturase PF00487 141 - 410 5.2e-33 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1034
AciI CCGC 1 cut(s) 491
AclWI GGATC 3 cut(s) 89, 461, 629
AcoI YGGCCR 1 cut(s) 166
AcuI CTGAAG 3 cut(s) 71, 681, 959
AcyI GRCGYC 1 cut(s) 275
AdeI CACNNNGTG 1 cut(s) 213
AfaI GTAC 2 cut(s) 233, 1094
AfiI CCNNNNNNNGG 2 cut(s) 1034, 1263
AgsI TTSAA 4 cut(s) 238, 406, 647, 997
AjnI CCWGG 4 cut(s) 67, 90, 133, 624
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 9 cut(s) 49, 55, 143, 295, 957, 1129, 1230, 1280, 1337
AluI AGCT 9 cut(s) 49, 55, 143, 295, 957, 1129, 1230, 1280, 1337
Alw21I GWGCWC 2 cut(s) 1088, 1137
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 3 cut(s) 89, 461, 629
AlwNI CAGNNNCTG 1 cut(s) 544
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 55, 1280
AseI ATTAAT 1 cut(s) 1341
Asp700I GAANNNNTTC 2 cut(s) 233, 1001
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 3 cut(s) 73, 424, 1025
AsuHPI GGTGA 2 cut(s) 122, 949
AsuII TTCGAA 1 cut(s) 327
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 3 cut(s) 73, 424, 1025
BalI TGGCCA 1 cut(s) 168
BanII GRGCYC 1 cut(s) 349
Bbv12I GWGCWC 2 cut(s) 1088, 1137
BbvI GCAGC 2 cut(s) 42, 1267
BccI CCATC 4 cut(s) 176, 207, 310, 762
BceAI ACGGC 1 cut(s) 501
BciT130I CCWGG 4 cut(s) 69, 92, 135, 626
BclI TGATCA 2 cut(s) 127, 727
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 204, 738
BfmI CTRYAG 3 cut(s) 286, 1118, 1286
BfoI RGCGCY 1 cut(s) 223
BglI GCCNNNNNGGC 1 cut(s) 1289
BglII AGATCT 1 cut(s) 264
BisI GCNGC 2 cut(s) 56, 1281
BlsI GCNGC 2 cut(s) 57, 1282
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 4 cut(s) 69, 92, 135, 626
Bme18I GGWCC 3 cut(s) 73, 424, 1025
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 73, 424, 1025
BmiI GGNNCC 3 cut(s) 74, 527, 1069
BmrFI CCNGG 4 cut(s) 69, 92, 135, 626
BmrI ACTGGG 3 cut(s) 573, 915, 1044
BmsI GCATC 4 cut(s) 478, 852, 1151, 1234
BmuI ACTGGG 3 cut(s) 573, 915, 1044
BpmI CTGGAG 1 cut(s) 1151
Bpu14I TTCGAA 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 236
BsaBI GATNNNNATC 5 cut(s) 86, 633, 639, 726, 1017
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 6 cut(s) 68, 91, 133, 223, 279, 1348
BsaXI ACNNNNNCTCC 2 cut(s) 1165, 1195
Bsc4I CCNNNNNNNGG 2 cut(s) 1034, 1263
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 3 cut(s) 568, 921, 1039
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 5 cut(s) 86, 633, 639, 726, 1017
BseBI CCWGG 4 cut(s) 69, 92, 135, 626
BseDI CCNNGG 6 cut(s) 68, 91, 133, 223, 279, 1348
BseGI GGATG 3 cut(s) 199, 843, 1249
BseJI GATNNNNATC 5 cut(s) 86, 633, 639, 726, 1017
BseLI CCNNNNNNNGG 2 cut(s) 1034, 1263
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 6 cut(s) 126, 282, 294, 1020, 1160, 1285
BseNI ACTGG 3 cut(s) 568, 921, 1039
BseRI GAGGAG 2 cut(s) 20, 59
BseXI GCAGC 2 cut(s) 42, 1267
BseYI CCCAGC 1 cut(s) 548
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 1088, 1137
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 1 cut(s) 656
BslFI GGGAC 3 cut(s) 86, 1298, 1310
BslI CCNNNNNNNGG 2 cut(s) 1034, 1263
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 3 cut(s) 86, 1298, 1310
BsnI GGCC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 327
Bsp1286I GDGCHC 3 cut(s) 349, 1088, 1137
Bsp143I GATC 7 cut(s) 81, 127, 264, 453, 634, 640, 727
Bsp19I CCATGG 1 cut(s) 1348
BspACI CCGC 1 cut(s) 491
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 6 cut(s) 125, 281, 295, 1019, 1161, 1284
BspHI TCATGA 3 cut(s) 124, 484, 780
BspLI GGNNCC 3 cut(s) 74, 527, 1069
BspMAI CTGCAG 2 cut(s) 1122, 1290
BspPI GGATC 3 cut(s) 89, 461, 629
BspT104I TTCGAA 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 655
BsrI ACTGG 3 cut(s) 568, 921, 1039
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 6 cut(s) 68, 91, 133, 223, 279, 1348
BssMI GATC 7 cut(s) 81, 127, 264, 453, 634, 640, 727
BssNI GRCGYC 1 cut(s) 275
BssT1I CCWWGG 2 cut(s) 279, 1348
Bst2UI CCWGG 4 cut(s) 69, 92, 135, 626
Bst4CI ACNGT 4 cut(s) 40, 211, 1177, 1189
BstACI GRCGYC 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 1216
BstBI TTCGAA 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 616, 1290
BstDEI CTNAG 7 cut(s) 112, 268, 303, 745, 1006, 1169, 1271
BstDSI CCRYGG 1 cut(s) 1348
BstF5I GGATG 3 cut(s) 199, 843, 1249
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 7 cut(s) 84, 130, 267, 456, 637, 643, 730
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 7 cut(s) 81, 127, 264, 453, 634, 640, 727
BstMWI GCNNNNNNNGC 7 cut(s) 55, 64, 968, 1126, 1216, 1289, 1334
BstNI CCWGG 4 cut(s) 69, 92, 135, 626
BstNSI RCATGY 1 cut(s) 655
BstSCI CCNGG 4 cut(s) 67, 90, 133, 624
BstSFI CTRYAG 3 cut(s) 286, 1118, 1286
BstV1I GCAGC 2 cut(s) 42, 1267
BstX2I RGATCY 3 cut(s) 81, 264, 453
BstYI RGATCY 3 cut(s) 81, 264, 453
BsuRI GGCC 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 1348
BtsCI GGATG 3 cut(s) 199, 843, 1249
BtsI GCAGTG 2 cut(s) 672, 969
BtsIMutI CAGTG 3 cut(s) 207, 672, 969
Cac8I GCNNGC 2 cut(s) 616, 1290
CaiI CAGNNNCTG 1 cut(s) 544
CciI TCATGA 3 cut(s) 124, 484, 780
CfoI GCGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 3 cut(s) 73, 424, 1025
CseI GACGC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 232, 1093
CviQI GTAC 2 cut(s) 232, 1093
DdeI CTNAG 7 cut(s) 112, 268, 303, 745, 1006, 1169, 1271
DpnI GATC 7 cut(s) 83, 129, 266, 455, 636, 642, 729
DpnII GATC 7 cut(s) 81, 127, 264, 453, 634, 640, 727
DraIII CACNNNGTG 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 279, 1348
Eco24I GRGCYC 1 cut(s) 349
Eco47I GGWCC 3 cut(s) 73, 424, 1025
Eco57I CTGAAG 3 cut(s) 71, 681, 959
Eco88I CYCGRG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 73
EcoRII CCWGG 4 cut(s) 67, 90, 133, 624
EcoT14I CCWWGG 2 cut(s) 279, 1348
EcoT38I GRGCYC 1 cut(s) 349
ErhI CCWWGG 2 cut(s) 279, 1348
FaqI GGGAC 3 cut(s) 86, 1298, 1310
FauI CCCGC 1 cut(s) 484
FbaI TGATCA 2 cut(s) 127, 727
Fnu4HI GCNGC 2 cut(s) 56, 1281
FokI GGATG 3 cut(s) 186, 830, 1256
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 2 cut(s) 56, 1281
FspBI CTAG 2 cut(s) 204, 738
GlaI GCGC 1 cut(s) 221
GluI GCNGC 2 cut(s) 56, 1281
GsaI CCCAGC 1 cut(s) 552
GsuI CTGGAG 1 cut(s) 1151
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 656
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 275
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 2 cut(s) 293, 1228
HinfI GANTC 3 cut(s) 186, 592, 873
HpaII CCGG 1 cut(s) 656
HphI GGTGA 2 cut(s) 122, 949
Hpy166II GTNNAC 3 cut(s) 672, 799, 990
Hpy188I TCNGA 4 cut(s) 115, 271, 412, 813
Hpy8I GTNNAC 3 cut(s) 672, 799, 990
HpyAV CCTTC 5 cut(s) 786, 826, 1186, 1246, 1316
HpyCH4III ACNGT 4 cut(s) 40, 211, 1177, 1189
HpyCH4V TGCA 7 cut(s) 58, 618, 665, 962, 1120, 1203, 1288
HpyF10VI GCNNNNNNNGC 7 cut(s) 55, 64, 968, 1126, 1216, 1289, 1334
HpyF3I CTNAG 7 cut(s) 112, 268, 303, 745, 1006, 1169, 1271
Hsp92I GRCGYC 1 cut(s) 275
HspAI GCGC 1 cut(s) 220
Ksp22I TGATCA 2 cut(s) 127, 727
Kzo9I GATC 7 cut(s) 81, 127, 264, 453, 634, 640, 727
LmnI GCTCC 3 cut(s) 46, 140, 1132
Lsp1109I GCAGC 2 cut(s) 42, 1267
LweI GCATC 4 cut(s) 478, 852, 1151, 1234
MaeI CTAG 2 cut(s) 204, 738
MaeIII GTNAC 3 cut(s) 175, 964, 1252
MalI GATC 7 cut(s) 83, 129, 266, 455, 636, 642, 729
MboI GATC 7 cut(s) 81, 127, 264, 453, 634, 640, 727
MboII GAAGA 2 cut(s) 635, 1330
MflI RGATCY 3 cut(s) 81, 264, 453
MhlI GDGCHC 3 cut(s) 349, 1088, 1137
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 2 cut(s) 531, 553
MluNI TGGCCA 1 cut(s) 168
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 4 cut(s) 699, 769, 905, 1208
MnlI CCTC 9 cut(s) 10, 37, 233, 265, 705, 909, 927, 1164, 1230
Mox20I TGGCCA 1 cut(s) 168
MroXI GAANNNNTTC 2 cut(s) 233, 1001
MscI TGGCCA 1 cut(s) 168
MseI TTAA 2 cut(s) 381, 1341
MslI CAYNNNNRTG 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 1129
MspI CCGG 1 cut(s) 656
MspR9I CCNGG 4 cut(s) 69, 92, 135, 626
MvaI CCWGG 4 cut(s) 69, 92, 135, 626
MwoI GCNNNNNNNGC 7 cut(s) 55, 64, 968, 1126, 1216, 1289, 1334
NcoI CCATGG 1 cut(s) 1348
NdeII GATC 7 cut(s) 81, 127, 264, 453, 634, 640, 727
NlaIV GGNNCC 3 cut(s) 74, 527, 1069
NmuCI GTSAC 2 cut(s) 964, 1252
NspI RCATGY 1 cut(s) 655
NspV TTCGAA 1 cut(s) 327
OliI CACNNNNGTG 1 cut(s) 135
PagI TCATGA 3 cut(s) 124, 484, 780
PdmI GAANNNNTTC 2 cut(s) 233, 1001
PfeI GAWTC 2 cut(s) 186, 873
PflMI CCANNNNNTGG 1 cut(s) 1034
PkrI GCNGC 2 cut(s) 57, 1282
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 73
PshBI ATTAAT 1 cut(s) 1341
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 4 cut(s) 67, 90, 133, 624
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 4 cut(s) 67, 90, 133, 624
PspN4I GGNNCC 3 cut(s) 74, 527, 1069
PspPI GGNCC 3 cut(s) 73, 424, 1025
PspPPI RGGWCCY 1 cut(s) 73
PstI CTGCAG 2 cut(s) 1122, 1290
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 3 cut(s) 81, 264, 453
PvuII CAGCTG 1 cut(s) 1129
RsaI GTAC 2 cut(s) 233, 1094
RsaNI GTAC 2 cut(s) 232, 1093
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 2 cut(s) 381, 1341
SatI GCNGC 2 cut(s) 56, 1281
Sau3AI GATC 7 cut(s) 81, 127, 264, 453, 634, 640, 727
Sau96I GGNCC 3 cut(s) 73, 424, 1025
SbfI CCTGCAGG 1 cut(s) 1290
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 4 cut(s) 69, 92, 135, 626
SdaI CCTGCAGG 1 cut(s) 1290
SduI GDGCHC 3 cut(s) 349, 1088, 1137
SfaNI GCATC 4 cut(s) 478, 852, 1151, 1234
SfcI CTRYAG 3 cut(s) 286, 1118, 1286
SfuI TTCGAA 1 cut(s) 327
SinI GGWCC 3 cut(s) 73, 424, 1025
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse8387I CCTGCAGG 1 cut(s) 1290
Sse9I AATT 2 cut(s) 531, 553
SsiI CCGC 1 cut(s) 491
SspI AATATT 1 cut(s) 358
SspMI CTAG 2 cut(s) 204, 738
StyD4I CCNGG 4 cut(s) 67, 90, 133, 624
StyI CCWWGG 2 cut(s) 279, 1348
TaaI ACNGT 4 cut(s) 40, 211, 1177, 1189
TaqI TCGA 4 cut(s) 261, 327, 689, 1050
TasI AATT 2 cut(s) 531, 553
TatI WGTACW 2 cut(s) 231, 1092
TfiI GAWTC 2 cut(s) 186, 873
Tru1I TTAA 2 cut(s) 381, 1341
Tru9I TTAA 2 cut(s) 381, 1341
TscAI CASTG 3 cut(s) 214, 672, 969
TseFI GTSAC 2 cut(s) 964, 1252
TseI GCWGC 2 cut(s) 55, 1280
Tsp45I GTSAC 2 cut(s) 964, 1252
TspDTI ATGAA 5 cut(s) 113, 178, 287, 674, 875
TspRI CASTG 3 cut(s) 214, 672, 969
Van91I CCANNNNNTGG 1 cut(s) 1034
VpaK11BI GGWCC 3 cut(s) 73, 424, 1025
VspI ATTAAT 1 cut(s) 1341
XceI RCATGY 1 cut(s) 655
XmnI GAANNNNTTC 2 cut(s) 233, 1001
XspI CTAG 2 cut(s) 204, 738
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.