AT3G61680

Lipase (class 3)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
22823423 .. 22827171
3749 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61680.3

Sequence Viewer

Length: 1950 bp
ATGGCGTTTAATACGGCTATGGCGTCTACATCTCCAGCGGCGGCAAATGACGTTTTAAGAGAACATATTGGCCTCCGTAGATCGTTGTCCGGTCAAGATCTCGTCTTAAAAGGCGGTGGTATACGGAGATCGAGTTCCGACAATCACTTGTGTTGTCGCTCCGGTAATAATAATAATCGCATTCTTGCTGTGTCTGTTCGTCCGGGGATGAAAACGAGTCGATCTGTGGGAGTGTTCTCGTTTCAGATATCGAGTTCTATAATCCCAAGTCCGATAAAAACGTTGCTATTTGAAACGGACACGTCTCAAGACGAGCAAGAGAGCGATGAGATTGAGATTGAGACAGAGCCAAATCTAGATGGAGCCAAGAAGGCAAATTGGGTCGAGAGGCTGCTTGAGATAAGGAGACAGTGGAAGAGAGAGCAAAAAACAGAGAGTGGAAACAGTGACGTTGCAGAGGAAAGTGTTGACGTTACGTGTGGTTGTGAAGAAGAAGAAGGTTGCATTGCGAATTACGGATCTGTAAATGGTGATTGGGGACGAGAATCGTTCTCTAGATTGCTTGTGAAGGTTTCTTGGTCTGAGGCTAAAAAGCTTTCTCAGTTAGCTTATTTGTGTAACTTGGCTTACACGATACCTGAGATCAAGGGTGAGGATTTGAGAAGAAACTATGGGTTAAAGTTTGTGACATCTTCATTGGAAAAGAAAGCTAAAGCAGCGATACTTAGAGAGAAACTAGAGCAAGATCCAACACATGTCCCTGTTATTACATCCCCGGATTTAGAATCCGAGAAGCAGTCTCAACGATCAGCTTCATCTTCTGCTTCTGCTTACAAGATTGCTGCTTCAGCTGCGTCTTACATTCACTCTTGCAAAGAGTATGATCTTTCAGAACCAATTTATAAATCAGCTGCTGCTGCTCAGGCTGCAGCGTCTACCATGACCGCGGTGGTTGCTGCGGGTGAGGAGGAGAAGCTAGAAGCGGCAAGGGAGTTACAGTCGCTACAATCATCTCCTTGTGAGTGGTTTGTTTGTGATGATCCAAACACATACACTAGGTGCTTTGTGATTCAGGGATCTGATTCTTTAGCTTCTTGGAAAGCAAACCTTTTCTTCGAGCCAACTAAGTTTGAGGACACAGATGTATTAGTCCACAGAGGAATCTACGAGGCAGCAAAAGGAATATACGAACAGTTCTTACCAGAAATAACAGAGCATTTGTCTAGACATGGAGATAGAGCTAAGTTTCAGTTCACGGGTCATTCTCTTGGAGGCAGTCTCTCATTAATAGTGAATTTGATGCTTATCTCTAGAGGACTCGTTAGCTCTGAAGCTATGAAATCCGTTGTCACGTTCGGTTCACCGTTTGTGTTTTGTGGTGGTGAGAAGATTCTAGCGGAGCTTGGTCTTGACGAGAGTCATGTTCACTGTGTGATGATGCATAGAGATATCGTCCCACGAGCCTTTTCGTGTAATTATCCTGACCATGTTGCTCTCGTTCTCAAGCGTTTGAATGGCTCCTTCCGTACACATCCTTGTCTCAACAAAAATAAACTGTTGTATTCACCGATGGGGAAAGTATATATTCTACAGCCGAGTGAGAGCGTCTCGCCGACGCACCCATGGCTTCCACCGGGAAACGCTCTGTACATTTTAGAAAATAGCAACGAAGGTTACTCTCCTACGGCGTTACGAGCATTTTTAAACCGCCCTCACCCGCTCGAAACGCTGAGTCAACGCGCAGCTTATGGCTCGGAAGGTTCAGTCTTGAGGGACCACGACTCCAAGAACTACGTTAAGGCCGTGAACGGAGTTCTCAGGCAGCACACGAAGCTCATAGTTAGGAAAGCCAGGATACAAAGGAGGAGTGTTTGGCCCGTGCTGACATCAGCAGGACGTGGATTAAACGAGAGCCTGACGACGGCCGAGGAGATCATGACACGTGTCTAA

Protein Analysis

649

Amino Acids

71.73

Weight (kDa)

6.65

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 355 - 492 8.6e-29 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 903
AccBSI CCGCTC 1 cut(s) 1720
AccI GTMKAC 3 cut(s) 26, 121, 935
AccII CGCG 2 cut(s) 947, 1740
AclI AACGTT 1 cut(s) 281
AclWI GGATC 4 cut(s) 526, 740, 1034, 1084
AcoI YGGCCR 1 cut(s) 1923
AcsI RAATTY 1 cut(s) 1294
AcuI CTGAAG 2 cut(s) 831, 1350
AcvI CACGTG 1 cut(s) 1943
AcyI GRCGYC 1 cut(s) 23
AdeI CACNNNGTG 2 cut(s) 1059, 1432
AfaI GTAC 2 cut(s) 1528, 1649
AfiI CCNNNNNNNGG 1 cut(s) 1921
AflIII ACRYGT 5 cut(s) 300, 476, 754, 1940, 1942
AgsI TTSAA 2 cut(s) 293, 1513
AjiI CACGTC 2 cut(s) 303, 1898
AjnI CCWGG 1 cut(s) 1850
AloI GAACNNNNNNTCC 2 cut(s) 118, 150
Alw26I GTCTC 7 cut(s) 309, 335, 400, 804, 1283, 1544, 1612
AlwI GGATC 4 cut(s) 526, 740, 1034, 1084
AlwNI CAGNNNCTG 1 cut(s) 914
AoxI GGCC 4 cut(s) 70, 1800, 1874, 1923
ApoI RAATTY 1 cut(s) 1294
AseI ATTAAT 1 cut(s) 1286
AspLEI GCGC 1 cut(s) 1742
AspS9I GGNCC 2 cut(s) 1774, 1875
AsuC2I CCSGG 3 cut(s) 204, 776, 1635
AsuHPI GGTGA 7 cut(s) 542, 662, 974, 1353, 1394, 1557, 1706
AvaII GGWCC 1 cut(s) 1774
BauI CACGAG 1 cut(s) 1458
BbrPI CACGTG 1 cut(s) 1943
BccI CCATC 2 cut(s) 353, 1564
BceAI ACGGC 4 cut(s) 30, 1701, 1787, 1938
BciT130I CCWGG 1 cut(s) 1852
BciVI GTATCC 1 cut(s) 1848
BcnI CCSGG 3 cut(s) 204, 776, 1635
BcoDI GTCTC 7 cut(s) 309, 335, 400, 804, 1283, 1544, 1612
BfaI CTAG 8 cut(s) 356, 555, 737, 977, 1056, 1224, 1311, 1394
BfmI CTRYAG 2 cut(s) 927, 1589
BfuI GTATCC 1 cut(s) 1848
BglI GCCNNNNNGGC 1 cut(s) 371
BglII AGATCT 1 cut(s) 97
Bme1390I CCNGG 4 cut(s) 204, 776, 1635, 1852
Bme18I GGWCC 1 cut(s) 1774
BmgBI CACGTC 2 cut(s) 303, 1898
BmgT120I GGNCC 2 cut(s) 1774, 1875
BmiI GGNNCC 3 cut(s) 364, 1519, 1775
BmrFI CCNGG 4 cut(s) 204, 776, 1635, 1852
BmsI GCATC 2 cut(s) 1290, 1428
BoxI GACNNNNGTC 2 cut(s) 1416, 1943
BplI GAGNNNNNCTC 4 cut(s) 1263, 1295, 1592, 1624
BpmI CTGGAG 1 cut(s) 18
Bpu10I CCTNAGC 1 cut(s) 921
BpuEI CTTGAG 4 cut(s) 291, 416, 1487, 1789
BpuMI CCSGG 3 cut(s) 204, 776, 1635
BsaAI YACGTR 2 cut(s) 477, 1943
BsaBI GATNNNNATC 1 cut(s) 1304
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 5 cut(s) 203, 774, 945, 1622, 1926
BsaWI WCCGGW 2 cut(s) 89, 161
BsaXI ACNNNNNCTCC 6 cut(s) 118, 148, 983, 1013, 1766, 1796
Bsc4I CCNNNNNNNGG 1 cut(s) 1921
Bse3DI GCAATG 1 cut(s) 504
Bse8I GATNNNNATC 1 cut(s) 1304
BseBI CCWGG 1 cut(s) 1852
BseDI CCNNGG 5 cut(s) 203, 774, 945, 1622, 1926
BseGI GGATG 3 cut(s) 213, 770, 1531
BseJI GATNNNNATC 1 cut(s) 1304
BseLI CCNNNNNNNGG 1 cut(s) 1921
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 6 cut(s) 573, 614, 630, 935, 1721, 1831
BseRI GAGGAG 4 cut(s) 980, 983, 1879, 1943
BseX3I CGGCCG 1 cut(s) 1923
Bsh1236I CGCG 2 cut(s) 947, 1740
Bsh1285I CGRYCG 1 cut(s) 1926
BshFI GGCC 4 cut(s) 72, 1802, 1876, 1925
BsiEI CGRYCG 1 cut(s) 1926
BsiSI CCGG 5 cut(s) 90, 162, 203, 776, 1634
BslFI GGGAC 4 cut(s) 552, 743, 1439, 1787
BslI CCNNNNNNNGG 1 cut(s) 1921
BsmAI GTCTC 7 cut(s) 309, 335, 400, 804, 1283, 1544, 1612
BsmBI CGTCTC 2 cut(s) 309, 1612
BsmFI GGGAC 4 cut(s) 552, 743, 1439, 1787
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 4 cut(s) 72, 1802, 1876, 1925
Bsp1407I TGTACA 1 cut(s) 1647
Bsp19I CCATGG 1 cut(s) 1622
BspANI GGCC 4 cut(s) 72, 1802, 1876, 1925
BspCNI CTCAG 6 cut(s) 574, 613, 631, 934, 1722, 1830
BspFNI CGCG 2 cut(s) 947, 1740
BspHI TCATGA 1 cut(s) 1935
BspLI GGNNCC 3 cut(s) 364, 1519, 1775
BspMAI CTGCAG 1 cut(s) 931
BspPI GGATC 4 cut(s) 526, 740, 1034, 1084
BsrBI CCGCTC 1 cut(s) 1720
BsrDI GCAATG 1 cut(s) 504
BsrGI TGTACA 1 cut(s) 1647
BssECI CCNNGG 5 cut(s) 203, 774, 945, 1622, 1926
BssNAI GTATAC 1 cut(s) 122
BssNI GRCGYC 1 cut(s) 23
BssSI CACGAG 1 cut(s) 1458
BssT1I CCWWGG 1 cut(s) 1622
Bst1107I GTATAC 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 1458
Bst2UI CCWGG 1 cut(s) 1852
Bst4CI ACNGT 7 cut(s) 411, 446, 999, 1194, 1365, 1430, 1557
Bst6I CTCTTC 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 1647
BstBAI YACGTR 2 cut(s) 477, 1943
BstDEI CTNAG 9 cut(s) 582, 600, 639, 725, 921, 1125, 1242, 1730, 1817
BstDSI CCRYGG 2 cut(s) 945, 1622
BstF5I GGATG 3 cut(s) 213, 770, 1531
BstFNI CGCG 2 cut(s) 947, 1740
BstHHI GCGC 1 cut(s) 1742
BstMAI GTCTC 7 cut(s) 309, 335, 400, 804, 1283, 1544, 1612
BstMCI CGRYCG 1 cut(s) 1926
BstNI CCWGG 1 cut(s) 1852
BstNSI RCATGY 1 cut(s) 758
BstPAI GACNNNNGTC 2 cut(s) 1416, 1943
BstSCI CCNGG 4 cut(s) 202, 774, 1633, 1850
BstSFI CTRYAG 2 cut(s) 927, 1589
BstUI CGCG 2 cut(s) 947, 1740
BstX2I RGATCY 4 cut(s) 97, 518, 745, 1076
BstYI RGATCY 4 cut(s) 97, 518, 745, 1076
BstZ17I GTATAC 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 1923
BsuI GTATCC 1 cut(s) 1848
BsuRI GGCC 4 cut(s) 72, 1802, 1876, 1925
BtgI CCRYGG 2 cut(s) 945, 1622
BtgZI GCGATG 1 cut(s) 339
BtrI CACGTC 2 cut(s) 303, 1898
BtsCI GGATG 3 cut(s) 213, 770, 1531
BtsIMutI CAGTG 3 cut(s) 416, 451, 1426
CaiI CAGNNNCTG 1 cut(s) 914
CciI TCATGA 1 cut(s) 1935
CfoI GCGC 1 cut(s) 1742
Cfr13I GGNCC 2 cut(s) 1774, 1875
Cfr42I CCGCGG 1 cut(s) 948
CseI GACGC 5 cut(s) 12, 843, 921, 1594, 1624
Csp6I GTAC 2 cut(s) 1527, 1648
CviAII CATG 7 cut(s) 755, 940, 1229, 1421, 1487, 1623, 1936
CviQI GTAC 2 cut(s) 1527, 1648
DdeI CTNAG 9 cut(s) 582, 600, 639, 725, 921, 1125, 1242, 1730, 1817
DraI TTTAAA 1 cut(s) 1704
DraIII CACNNNGTG 2 cut(s) 1059, 1432
EaeI YGGCCR 1 cut(s) 1923
EagI CGGCCG 1 cut(s) 1923
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
EclXI CGGCCG 1 cut(s) 1923
Eco130I CCWWGG 1 cut(s) 1622
Eco32I GATATC 2 cut(s) 249, 1450
Eco47I GGWCC 1 cut(s) 1774
Eco52I CGGCCG 1 cut(s) 1923
Eco57I CTGAAG 2 cut(s) 831, 1350
Eco72I CACGTG 1 cut(s) 1943
EcoRII CCWGG 1 cut(s) 1850
EcoRV GATATC 2 cut(s) 249, 1450
EcoT14I CCWWGG 1 cut(s) 1622
EcoT22I ATGCAT 1 cut(s) 1443
ErhI CCWWGG 1 cut(s) 1622
Esp3I CGTCTC 2 cut(s) 309, 1612
FaeI CATG 7 cut(s) 758, 943, 1232, 1424, 1490, 1626, 1939
FalI AAGNNNNNCTT 2 cut(s) 1092, 1124
FaqI GGGAC 4 cut(s) 552, 743, 1439, 1787
FatI CATG 7 cut(s) 754, 939, 1228, 1420, 1486, 1622, 1935
FauI CCCGC 2 cut(s) 952, 1725
FblI GTMKAC 3 cut(s) 26, 121, 935
FokI GGATG 3 cut(s) 220, 757, 1518
FspBI CTAG 8 cut(s) 356, 555, 737, 977, 1056, 1224, 1311, 1394
GlaI GCGC 1 cut(s) 1741
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 4 cut(s) 72, 1802, 1876, 1925
HapII CCGG 5 cut(s) 90, 162, 203, 776, 1634
HgaI GACGC 5 cut(s) 12, 843, 921, 1594, 1624
HhaI GCGC 1 cut(s) 1742
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 7 cut(s) 758, 943, 1232, 1424, 1490, 1626, 1939
Hin6I GCGC 1 cut(s) 1740
HinP1I GCGC 1 cut(s) 1740
HincII GTYRAC 2 cut(s) 469, 1736
HindII GTYRAC 2 cut(s) 469, 1736
HindIII AAGCTT 1 cut(s) 593
HpaII CCGG 5 cut(s) 90, 162, 203, 776, 1634
HphI GGTGA 7 cut(s) 542, 662, 974, 1353, 1394, 1557, 1706
Hpy188I TCNGA 9 cut(s) 139, 246, 273, 583, 790, 892, 1081, 1330, 1756
Hpy99I CGWCG 2 cut(s) 1618, 1924
HpyAV CCTTC 6 cut(s) 364, 491, 562, 1531, 1664, 1751
HpyCH4III ACNGT 7 cut(s) 411, 446, 999, 1194, 1365, 1430, 1557
HpyCH4V TGCA 5 cut(s) 455, 504, 873, 929, 1441
HpyF3I CTNAG 9 cut(s) 582, 600, 639, 725, 921, 1125, 1242, 1730, 1817
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 7 cut(s) 758, 943, 1232, 1424, 1490, 1626, 1939
HspAI GCGC 1 cut(s) 1740
KspI CCGCGG 1 cut(s) 948
LmnI GCTCC 4 cut(s) 164, 362, 1399, 1523
LweI GCATC 2 cut(s) 1290, 1428
MaeI CTAG 8 cut(s) 356, 555, 737, 977, 1056, 1224, 1311, 1394
MaeIII GTNAC 8 cut(s) 446, 472, 617, 685, 993, 1348, 1673, 1689
MbiI CCGCTC 1 cut(s) 1720
MboII GAAGA 9 cut(s) 427, 500, 503, 506, 675, 684, 810, 1105, 1399
MflI RGATCY 4 cut(s) 97, 518, 745, 1076
MluCI AATT 5 cut(s) 376, 511, 897, 1294, 1474
MlyI GAGTC 5 cut(s) 226, 1311, 1426, 1741, 1775
MmeI TCCRAC 2 cut(s) 162, 773
Mph1103I ATGCAT 1 cut(s) 1443
MseI TTAA 8 cut(s) 9, 56, 107, 677, 1286, 1703, 1797, 1904
MspA1I CMGCKG 4 cut(s) 38, 851, 911, 947
MspI CCGG 5 cut(s) 90, 162, 203, 776, 1634
MspR9I CCNGG 4 cut(s) 204, 776, 1635, 1852
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 1 cut(s) 1852
MvnI CGCG 2 cut(s) 947, 1740
NciI CCSGG 3 cut(s) 204, 776, 1635
NcoI CCATGG 1 cut(s) 1622
NlaIII CATG 7 cut(s) 758, 943, 1232, 1424, 1490, 1626, 1939
NlaIV GGNNCC 3 cut(s) 364, 1519, 1775
NmeAIII GCCGAG 1 cut(s) 1620
NmuCI GTSAC 3 cut(s) 446, 685, 1348
NsiI ATGCAT 1 cut(s) 1443
NspI RCATGY 1 cut(s) 758
PagI TCATGA 1 cut(s) 1935
PciI ACATGT 1 cut(s) 754
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 1800
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 6 cut(s) 545, 785, 1069, 1082, 1161, 1390
PleI GAGTC 5 cut(s) 225, 1311, 1425, 1740, 1775
PmaCI CACGTG 1 cut(s) 1943
PmlI CACGTG 1 cut(s) 1943
PpsI GAGTC 5 cut(s) 225, 1311, 1425, 1740, 1775
Ppu21I YACGTR 2 cut(s) 477, 1943
PscI ACATGT 1 cut(s) 754
PshAI GACNNNNGTC 2 cut(s) 1416, 1943
PshBI ATTAAT 1 cut(s) 1286
PsiI TTATAA 1 cut(s) 903
Psp1406I AACGTT 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 1850
PspCI CACGTG 1 cut(s) 1943
PspGI CCWGG 1 cut(s) 1850
PspN4I GGNNCC 3 cut(s) 364, 1519, 1775
PspPI GGNCC 2 cut(s) 1774, 1875
PsrI GAACNNNNNNTAC 2 cut(s) 1182, 1214
PstI CTGCAG 1 cut(s) 931
PstNI CAGNNNCTG 1 cut(s) 914
PsuI RGATCY 4 cut(s) 97, 518, 745, 1076
PvuII CAGCTG 2 cut(s) 851, 911
RsaI GTAC 2 cut(s) 1528, 1649
RsaNI GTAC 2 cut(s) 1527, 1648
SacII CCGCGG 1 cut(s) 948
SaqAI TTAA 8 cut(s) 9, 56, 107, 677, 1286, 1703, 1797, 1904
Sau96I GGNCC 2 cut(s) 1774, 1875
SchI GAGTC 5 cut(s) 226, 1311, 1426, 1741, 1775
ScrFI CCNGG 4 cut(s) 204, 776, 1635, 1852
SfaNI GCATC 2 cut(s) 1290, 1428
SfcI CTRYAG 2 cut(s) 927, 1589
Sfr303I CCGCGG 1 cut(s) 948
SgrBI CCGCGG 1 cut(s) 948
SinI GGWCC 1 cut(s) 1774
SmlI CTYRAG 4 cut(s) 306, 395, 1502, 1768
SmoI CTYRAG 4 cut(s) 306, 395, 1502, 1768
Sse9I AATT 5 cut(s) 376, 511, 897, 1294, 1474
SspMI CTAG 8 cut(s) 356, 555, 737, 977, 1056, 1224, 1311, 1394
StyD4I CCNGG 4 cut(s) 202, 774, 1633, 1850
StyI CCWWGG 1 cut(s) 1622
TaaI ACNGT 7 cut(s) 411, 446, 999, 1194, 1365, 1430, 1557
TaqI TCGA 6 cut(s) 131, 220, 251, 384, 1116, 1722
TasI AATT 5 cut(s) 376, 511, 897, 1294, 1474
TatI WGTACW 1 cut(s) 1647
TauI GCSGC 3 cut(s) 41, 44, 986
TfiI GAWTC 6 cut(s) 545, 785, 1069, 1082, 1161, 1390
Tru1I TTAA 8 cut(s) 9, 56, 107, 677, 1286, 1703, 1797, 1904
Tru9I TTAA 8 cut(s) 9, 56, 107, 677, 1286, 1703, 1797, 1904
TscAI CASTG 3 cut(s) 416, 451, 1433
TseFI GTSAC 3 cut(s) 446, 685, 1348
Tsp45I GTSAC 3 cut(s) 446, 685, 1348
TspDTI ATGAA 4 cut(s) 224, 684, 804, 1352
TspGWI ACGGA 7 cut(s) 65, 139, 311, 531, 1333, 1514, 1824
TspRI CASTG 3 cut(s) 416, 451, 1433
VpaK11BI GGWCC 1 cut(s) 1774
VspI ATTAAT 1 cut(s) 1286
XapI RAATTY 1 cut(s) 1294
XbaI TCTAGA 4 cut(s) 355, 554, 1223, 1310
XceI RCATGY 1 cut(s) 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmiI GTMKAC 3 cut(s) 26, 121, 935
XspI CTAG 8 cut(s) 356, 555, 737, 977, 1056, 1224, 1311, 1394
Zsp2I ATGCAT 1 cut(s) 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.