Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002962

Physical Location & Seq

Genomic Coordinates Reverse (-)

705571 .. 706901

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1006300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCATGCAGTTCACCAGTTATTCCTACCTCGGCCGCTTCCGCCAGGACGGTAGACATTTTCAAAGAGCACAATGGTCTCCGCCGGTCTAACTCCAGCCAAGACCTTTACATTCGTGCTACTATGCGGAGGTCTTCTTCGGACAACCATCTTTGTTGCCGCATCAATCGTATCCACGCAGCAGCAACGGAACCAAAACTAAAGAACAGTCGTTCCATGGGGATTTTCCCGTTTCAGTTTTCGAGTTCCATTCTCCCAAACTCGGTGAGATCATTCTTTGATCCAGACACGAGTAATCATATGAGCATAGCGGAGAAGGACATGAGTACGGAGAACTCTGGGGAGAGTGCCAGTGAGGAGAGAAAAAGAACCAATTGGGTGGAGAGACTTGTAGAAATCAGAAGTAAATGGAGGAATAGGCAGAAAAAGGACGATGCGGATGAAGAGAGCGTCTGTGAAGCGGGTGAAAATGGTGAGTGTGAATGTGGCAGTGAGGAGGGTGGCTGTGCGGTGGATTATGCTGCAGAAGACGATGAGGGAGAAATCAGTCCTGAAGTTTTTCGGAGGTTTTTGGTTCGAGTGCCATGGTTTGATACCAAGCTGTTTTCCAAGTTATCCTTCTTATGCAACATGGCCTATGCGATACCACAACTCAAGGAAAATGATTTAAAGAGATATTTTGACCTACAATTAGTAACAACTTCACTAGAAAAGAAAGCCGTAGAAGATGAAATCAAAGCAAAACTAGATGACGACTCTAATCGTGTACCTGTAGCTGCTGAAGGCGCTAGTGAATCCAGTTCGGAGAAAGCTGTAGAATCTGAGTACAAGCGTCCATGCCGTCCTGCTGTTGCTTACAATATCGCTGCCTCAGCCGCATCTTATGTGCGGTCACGCGATAAGGATAGCATGCCACCCAGGTCCAAATTGCAGCAGGAGGGTGATGGTGAAAATTCCCGAGAGGAAGGAGGGTACTCACCTCGAAGCTACAAGCCAGAGGTTGCAGTTTCCATGGCAGCATCAGCAATGACAGCAATGGTTGCAGCAGGGGAAAAGGAGAAACAAGAAACAGCAGAGGACCTTCAGTCACTCAACTCCTCACCTTGTGAATGGTTTGTCTGTGATGATTCCAGTACGTATACTCGTTGTTTTGTGATTCAGGTAAACTTTCTGCCCTTCATCCCACTAGATCTGTGTTTGATAATAGCTCCCCAACAGCCTTTCAAATCCAATTGTGGGATTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

416

Amino Acids

46.31

Weight (kDa)

5.15

Isoelectric Point (pI)

66.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61680 AT3G61680 AT3G61680
fragaria_vesca	FvH4_6g10421 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230
malus_domestica	MD01G1079000.v1.1 MD04G1169900.v1.1 MD07G1147800.v1.1 MD12G1184000.v1.1 MD14G1006300.v1.1
prunus_persica	Prupe.2G186100_v2.0.a1 Prupe.2G186100_v2.0.a1 Prupe.6G288500_v2.0.a1
pyrus_communis	pycom01g10730
rosa_chinensis	RchiOBHm_Chr1g0359261 RchiOBHm_Chr3g0461341
rosa_laevigata	RLG00000024940 RLG00000027889
rosa_multiflora	Rmu_ssc0000135.1_g000034 Rmu_ssc0000326.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297190 Rroxscaffold_6G00418380
rosa_rugosa	Rorug01G0268900 Rorug01G0269000 Rorug03G0049400
rosa_samantha	Rh1AG282800 Rh1BG249100 Rh1CG266900 Rh1DG278000 Rh3BG111500 Rh3DG113300
rosa_wichuraiana	Rw1G025110 Rw3G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	54, 1139
AccII	CGCG	1 cut(s)	897
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	952
AcuI	CTGAAG	3 cut(s)	573, 801, 1067
AdeI	CACNNNGTG	1 cut(s)	1106
AfaI	GTAC	5 cut(s)	328, 768, 827, 974, 1135
AfiI	CCNNNNNNNGG	2 cut(s)	262, 1236
AgsI	TTSAA	2 cut(s)	64, 1225
AhdI	GACNNNNNGTC	1 cut(s)	1084
AjnI	CCWGG	2 cut(s)	44, 917
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	5 cut(s)	601, 776, 812, 987, 1208
AluI	AGCT	5 cut(s)	601, 776, 812, 987, 1208
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	83, 379
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	957
AoxI	GGCC	2 cut(s)	33, 633
ApeKI	GCWGC	8 cut(s)	179, 182, 521, 776, 866, 931, 1016, 1043
ApoI	RAATTY	1 cut(s)	952
Asp700I	GAANNNNTTC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	2 cut(s)	921, 1078
AsuHPI	GGTGA	8 cut(s)	6, 277, 476, 485, 953, 959, 969, 1092
AvaI	CYCGRG	1 cut(s)	957
AvaII	GGWCC	2 cut(s)	921, 1078
BauI	CACGAG	1 cut(s)	289
BbsI	GAAGAC	2 cut(s)	126, 534
Bbv12I	GWGCWC	1 cut(s)	72
BbvCI	CCTCAGC	1 cut(s)	871
BbvI	GCAGC	8 cut(s)	191, 194, 508, 763, 853, 943, 1028, 1055
BccI	CCATC	2 cut(s)	156, 938
BceAI	ACGGC	2 cut(s)	704, 825
BciT130I	CCWGG	2 cut(s)	46, 919
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	83, 379
BfaI	CTAG	4 cut(s)	707, 746, 789, 1187
BfmI	CTRYAG	3 cut(s)	522, 771, 813
BfoI	RGCGCY	1 cut(s)	789
BfuI	GTATCC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	1189
Bme1390I	CCNGG	2 cut(s)	46, 919
Bme18I	GGWCC	2 cut(s)	921, 1078
BmeRI	GACNNNNNGTC	1 cut(s)	1084
BmeT110I	CYCGRG	1 cut(s)	957
BmgT120I	GGNCC	2 cut(s)	921, 1078
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	2 cut(s)	46, 919
BmsI	GCATC	4 cut(s)	171, 424, 887, 1028
BpiI	GAAGAC	2 cut(s)	126, 534
BpmI	CTGGAG	1 cut(s)	79
Bpu10I	CCTNAGC	1 cut(s)	871
BpuEI	CTTGAG	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	1137
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	5 cut(s)	30, 216, 584, 917, 1011
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 1236
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	4 cut(s)	17, 351, 798, 1131
Bse3DI	GCAATG	2 cut(s)	1032, 1041
BseBI	CCWGG	2 cut(s)	46, 919
BseDI	CCNNGG	5 cut(s)	30, 216, 584, 917, 1011
BseGI	GGATG	2 cut(s)	445, 1179
BseLI	CCNNNNNNNGG	2 cut(s)	262, 1236
BseMI	GCAATG	2 cut(s)	1032, 1041
BseMII	CTCAG	2 cut(s)	813, 885
BseNI	ACTGG	4 cut(s)	17, 351, 798, 1131
BseRI	GAGGAG	3 cut(s)	371, 509, 1087
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	8 cut(s)	191, 194, 508, 763, 853, 943, 1028, 1055
Bsh1236I	CGCG	1 cut(s)	897
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	35, 635
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	957
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	262, 1236
BsmAI	GTCTC	2 cut(s)	83, 379
BsnI	GGCC	2 cut(s)	35, 635
Bso31I	GGTCTC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	957
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	3 cut(s)	269, 280, 1189
Bsp19I	CCATGG	3 cut(s)	216, 584, 1011
BspANI	GGCC	2 cut(s)	35, 635
BspCNI	CTCAG	2 cut(s)	814, 884
BspFNI	CGCG	1 cut(s)	897
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	1032, 1041
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	4 cut(s)	17, 351, 798, 1131
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	5 cut(s)	30, 216, 584, 917, 1011
BssMI	GATC	3 cut(s)	269, 280, 1189
BssNAI	GTATAC	1 cut(s)	1140
BssSI	CACGAG	1 cut(s)	289
BssT1I	CCWWGG	3 cut(s)	216, 584, 1011
Bst1107I	GTATAC	1 cut(s)	1140
Bst2BI	CACGAG	1 cut(s)	289
Bst2UI	CCWGG	2 cut(s)	46, 919
Bst4CI	ACNGT	2 cut(s)	52, 209
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	1040
BstBAI	YACGTR	1 cut(s)	1137
BstC8I	GCNNGC	2 cut(s)	7, 911
BstDEI	CTNAG	2 cut(s)	822, 871
BstDSI	CCRYGG	3 cut(s)	216, 584, 1011
BstF5I	GGATG	2 cut(s)	445, 1179
BstFNI	CGCG	1 cut(s)	897
BstH2I	RGCGCY	1 cut(s)	789
BstHHI	GCGC	1 cut(s)	788
BstKTI	GATC	3 cut(s)	272, 283, 1192
BstMAI	GTCTC	2 cut(s)	83, 379
BstMBI	GATC	3 cut(s)	269, 280, 1189
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 785, 872, 875, 1022, 1031, 1040
BstNI	CCWGG	2 cut(s)	46, 919
BstNSI	RCATGY	2 cut(s)	9, 913
BstSCI	CCNGG	2 cut(s)	44, 917
BstSFI	CTRYAG	3 cut(s)	522, 771, 813
BstSNI	TACGTA	1 cut(s)	1137
BstUI	CGCG	1 cut(s)	897
BstV1I	GCAGC	8 cut(s)	191, 194, 508, 763, 853, 943, 1028, 1055
BstV2I	GAAGAC	2 cut(s)	126, 534
BstX2I	RGATCY	1 cut(s)	1189
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	1189
BstZ17I	GTATAC	1 cut(s)	1140
BstZI	CGGCCG	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	35, 635
BtgI	CCRYGG	3 cut(s)	216, 584, 1011
BtsCI	GGATG	2 cut(s)	445, 1179
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	2 cut(s)	358, 496
Cac8I	GCNNGC	2 cut(s)	7, 911
CfoI	GCGC	1 cut(s)	788
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	921, 1078
CseI	GACGC	2 cut(s)	439, 821
Csp6I	GTAC	5 cut(s)	327, 767, 826, 973, 1134
CviAII	CATG	8 cut(s)	6, 217, 322, 585, 631, 837, 910, 1012
CviQI	GTAC	5 cut(s)	327, 767, 826, 973, 1134
DdeI	CTNAG	2 cut(s)	822, 871
DpnI	GATC	3 cut(s)	271, 282, 1191
DpnII	GATC	3 cut(s)	269, 280, 1189
DraI	TTTAAA	1 cut(s)	669
DraIII	CACNNNGTG	1 cut(s)	1106
DriI	GACNNNNNGTC	1 cut(s)	1084
EaeI	YGGCCR	1 cut(s)	33
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	438
Eam1105I	GACNNNNNGTC	1 cut(s)	1084
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	2 cut(s)	31, 71
EclXI	CGGCCG	1 cut(s)	33
Eco105I	TACGTA	1 cut(s)	1137
Eco130I	CCWWGG	3 cut(s)	216, 584, 1011
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	2 cut(s)	921, 1078
Eco52I	CGGCCG	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	573, 801, 1067
Eco88I	CYCGRG	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	1078
EcoRII	CCWGG	2 cut(s)	44, 917
EcoT14I	CCWWGG	3 cut(s)	216, 584, 1011
ErhI	CCWWGG	3 cut(s)	216, 584, 1011
FaeI	CATG	8 cut(s)	9, 220, 325, 588, 634, 840, 913, 1015
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FatI	CATG	8 cut(s)	5, 216, 321, 584, 630, 836, 909, 1011
FauI	CCCGC	1 cut(s)	454
FauNDI	CATATG	1 cut(s)	300
FblI	GTMKAC	2 cut(s)	54, 1139
FokI	GGATG	2 cut(s)	452, 1166
FspBI	CTAG	4 cut(s)	707, 746, 789, 1187
GlaI	GCGC	1 cut(s)	787
GsuI	CTGGAG	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	35, 635
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	2 cut(s)	439, 821
HhaI	GCGC	1 cut(s)	788
Hin1II	CATG	8 cut(s)	9, 220, 325, 588, 634, 840, 913, 1015
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HinfI	GANTC	5 cut(s)	755, 794, 818, 1127, 1156
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	8 cut(s)	6, 277, 476, 485, 953, 959, 969, 1092
Hpy166II	GTNNAC	5 cut(s)	14, 55, 767, 1140, 1165
Hpy188I	TCNGA	5 cut(s)	142, 401, 564, 805, 823
Hpy188III	TCNNGA	3 cut(s)	284, 551, 957
Hpy8I	GTNNAC	5 cut(s)	14, 55, 767, 1140, 1165
HpyAV	CCTTC	6 cut(s)	310, 628, 776, 959, 1091, 1186
HpyCH4III	ACNGT	2 cut(s)	52, 209
HpyCH4IV	ACGT	1 cut(s)	1136
HpyCH4V	TGCA	6 cut(s)	9, 524, 627, 931, 1004, 1043
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 785, 872, 875, 1022, 1031, 1040
HpyF3I	CTNAG	2 cut(s)	822, 871
HpySE526I	ACGT	1 cut(s)	1136
Hsp92II	CATG	8 cut(s)	9, 220, 325, 588, 634, 840, 913, 1015
HspAI	GCGC	1 cut(s)	786
Kzo9I	GATC	3 cut(s)	269, 280, 1189
LmnI	GCTCC	1 cut(s)	1213
Lsp1109I	GCAGC	8 cut(s)	191, 194, 508, 763, 853, 943, 1028, 1055
LweI	GCATC	4 cut(s)	171, 424, 887, 1028
MaeI	CTAG	4 cut(s)	707, 746, 789, 1187
MaeII	ACGT	1 cut(s)	1136
MaeIII	GTNAC	3 cut(s)	694, 891, 1086
MalI	GATC	3 cut(s)	271, 282, 1191
MboI	GATC	3 cut(s)	269, 280, 1189
MboII	GAAGA	5 cut(s)	126, 129, 455, 539, 737
MfeI	CAATTG	2 cut(s)	373, 1231
MflI	RGATCY	1 cut(s)	1189
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	5 cut(s)	373, 689, 926, 952, 1231
MlyI	GAGTC	1 cut(s)	749
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	2 cut(s)	668, 1242
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	46, 919
MunI	CAATTG	2 cut(s)	373, 1231
MvaI	CCWGG	2 cut(s)	46, 919
MvnI	CGCG	1 cut(s)	897
MwoI	GCNNNNNNNGC	7 cut(s)	41, 785, 872, 875, 1022, 1031, 1040
NcoI	CCATGG	3 cut(s)	216, 584, 1011
NdeI	CATATG	1 cut(s)	300
NdeII	GATC	3 cut(s)	269, 280, 1189
NlaIII	CATG	8 cut(s)	9, 220, 325, 588, 634, 840, 913, 1015
NlaIV	GGNNCC	1 cut(s)	192
NmeAIII	GCCGAG	1 cut(s)	11
NmuCI	GTSAC	2 cut(s)	891, 1086
NspI	RCATGY	2 cut(s)	9, 913
PaeI	GCATGC	2 cut(s)	9, 913
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	4 cut(s)	794, 818, 1127, 1156
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
Ppu21I	YACGTR	1 cut(s)	1137
PpuMI	RGGWCCY	1 cut(s)	1078
Psp5II	RGGWCCY	1 cut(s)	1078
Psp6I	CCWGG	2 cut(s)	44, 917
PspGI	CCWGG	2 cut(s)	44, 917
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	921, 1078
PspPPI	RGGWCCY	1 cut(s)	1078
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	1189
RsaI	GTAC	5 cut(s)	328, 768, 827, 974, 1135
RsaNI	GTAC	5 cut(s)	327, 767, 826, 973, 1134
SaqAI	TTAA	2 cut(s)	668, 1242
Sau3AI	GATC	3 cut(s)	269, 280, 1189
Sau96I	GGNCC	2 cut(s)	921, 1078
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	46, 919
SduI	GDGCHC	1 cut(s)	72
SfaNI	GCATC	4 cut(s)	171, 424, 887, 1028
SfcI	CTRYAG	3 cut(s)	522, 771, 813
SinI	GGWCC	2 cut(s)	921, 1078
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SnaBI	TACGTA	1 cut(s)	1137
SphI	GCATGC	2 cut(s)	9, 913
Sse9I	AATT	5 cut(s)	373, 689, 926, 952, 1231
SspMI	CTAG	4 cut(s)	707, 746, 789, 1187
StyD4I	CCNGG	2 cut(s)	44, 917
StyI	CCWWGG	3 cut(s)	216, 584, 1011
TaaI	ACNGT	2 cut(s)	52, 209
TaiI	ACGT	1 cut(s)	1139
TaqI	TCGA	3 cut(s)	242, 577, 982
TasI	AATT	5 cut(s)	373, 689, 926, 952, 1231
TatI	WGTACW	1 cut(s)	825
TauI	GCSGC	3 cut(s)	38, 162, 878
TfiI	GAWTC	4 cut(s)	794, 818, 1127, 1156
Tru1I	TTAA	2 cut(s)	668, 1242
Tru9I	TTAA	2 cut(s)	668, 1242
TscAI	CASTG	2 cut(s)	358, 496
TseFI	GTSAC	2 cut(s)	891, 1086
TseI	GCWGC	8 cut(s)	179, 182, 521, 776, 866, 931, 1016, 1043
Tsp45I	GTSAC	2 cut(s)	891, 1086
TspDTI	ATGAA	3 cut(s)	456, 744, 1168
TspGWI	ACGGA	2 cut(s)	203, 344
TspRI	CASTG	2 cut(s)	358, 496
VpaK11BI	GGWCC	2 cut(s)	921, 1078
XapI	RAATTY	1 cut(s)	952
XceI	RCATGY	2 cut(s)	9, 913
XmiI	GTMKAC	2 cut(s)	54, 1139
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	4 cut(s)	707, 746, 789, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.