Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002962

Physical Location & Seq

Genomic Coordinates Reverse (-)

26068445 .. 26069172

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1169900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTGTACTCTCCAATCGGAAAACTGTTCATTCTCCAACCTGATGAAAAGTTATCTCCTCCACACCCTCTACTCCCCATGGGGACTGCCCTCTATGCCTTGGACAACACGCAATCTGATTTCTCGTCCGATATCTTTAGGGCCTTCTTGAACTCCCCACATCCACTAGAAACCCTTAGTGATCTAACAGCCTATGGTTCAGAAGGTACAATCTTACGCGATCACGACTCATGCAACTATCTAAAGGCTATGAATAATATCCTAAGGCAACACACAAGGATGGTTGCGAGGAAGGTGAGGAAACAGCGGAATCTCCTGTGGCTGCTGCTTACTTCACCATCTCCACACTGGTCCAACGATGAAGATGAAAGTGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

127

Amino Acids

14.34

Weight (kDa)

6.17

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61680 AT3G61680 AT3G61680
fragaria_vesca	FvH4_6g10421 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230
malus_domestica	MD01G1079000.v1.1 MD04G1169900.v1.1 MD07G1147800.v1.1 MD12G1184000.v1.1 MD14G1006300.v1.1
prunus_persica	Prupe.2G186100_v2.0.a1 Prupe.2G186100_v2.0.a1 Prupe.6G288500_v2.0.a1
pyrus_communis	pycom01g10730
rosa_chinensis	RchiOBHm_Chr1g0359261 RchiOBHm_Chr3g0461341
rosa_laevigata	RLG00000024940 RLG00000027889
rosa_multiflora	Rmu_ssc0000135.1_g000034 Rmu_ssc0000326.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297190 Rroxscaffold_6G00418380
rosa_rugosa	Rorug01G0268900 Rorug01G0269000 Rorug03G0049400
rosa_samantha	Rh1AG282800 Rh1BG249100 Rh1CG266900 Rh1DG278000 Rh3BG111500 Rh3DG113300
rosa_wichuraiana	Rw1G025110 Rw3G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	307
AfaI	GTAC	2 cut(s)	8, 208
AgsI	TTSAA	1 cut(s)	151
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	322, 325
AspS9I	GGNCC	2 cut(s)	141, 351
AsuHPI	GGTGA	2 cut(s)	307, 327
AvaII	GGWCC	1 cut(s)	351
AxyI	CCTNAGG	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	309, 312
BccI	CCATC	2 cut(s)	274, 346
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	377
BisI	GCNGC	2 cut(s)	323, 326
BlsI	GCNGC	2 cut(s)	324, 327
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	141, 351
BsaJI	CCNNGG	2 cut(s)	78, 99
Bse1I	ACTGG	1 cut(s)	353
Bse21I	CCTNAGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	78, 99
BseGI	GGATG	2 cut(s)	160, 285
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	309, 312
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	181, 220
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	78, 99
BssMI	GATC	2 cut(s)	181, 220
BssT1I	CCWWGG	2 cut(s)	78, 99
Bst4CI	ACNGT	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	176, 263
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	160, 285
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	2 cut(s)	184, 223
BstMBI	GATC	2 cut(s)	181, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	377
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	309, 312
Bsu36I	CCTNAGG	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	160, 285
BtsIMutI	CAGTG	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	141, 351
Csp6I	GTAC	2 cut(s)	7, 207
CviAII	CATG	2 cut(s)	79, 231
CviJI	RGCY	4 cut(s)	143, 191, 248, 322
CviKI_1	RGCY	4 cut(s)	143, 191, 248, 322
CviQI	GTAC	2 cut(s)	7, 207
DdeI	CTNAG	2 cut(s)	176, 263
DpnI	GATC	2 cut(s)	183, 222
DpnII	GATC	2 cut(s)	181, 220
Eco130I	CCWWGG	2 cut(s)	78, 99
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	351
Eco81I	CCTNAGG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	78, 99
ErhI	CCWWGG	2 cut(s)	78, 99
FaeI	CATG	2 cut(s)	82, 234
FaiI	YATR	5 cut(s)	80, 96, 195, 232, 251
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	2 cut(s)	78, 230
Fnu4HI	GCNGC	2 cut(s)	323, 326
FokI	GGATG	2 cut(s)	147, 292
Fsp4HI	GCNGC	2 cut(s)	323, 326
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	2 cut(s)	323, 326
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	82, 234
HinfI	GANTC	2 cut(s)	227, 310
HphI	GGTGA	2 cut(s)	307, 327
Hpy188I	TCNGA	4 cut(s)	20, 118, 130, 202
Hpy188III	TCNNGA	2 cut(s)	148, 224
HpyAV	CCTTC	3 cut(s)	154, 197, 286
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	176, 263
Hsp92II	CATG	2 cut(s)	82, 234
Kzo9I	GATC	2 cut(s)	181, 220
LpnPI	CCDG	3 cut(s)	54, 329, 334
Lsp1109I	GCAGC	2 cut(s)	309, 312
MaeI	CTAG	1 cut(s)	167
MalI	GATC	2 cut(s)	183, 222
MboI	GATC	2 cut(s)	181, 220
MboII	GAAGA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	2 cut(s)	61, 378
MnlI	CCTC	5 cut(s)	69, 78, 101, 282, 291
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	181, 220
NlaIII	CATG	2 cut(s)	82, 234
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	324, 327
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	141, 351
RsaI	GTAC	2 cut(s)	8, 208
RsaNI	GTAC	2 cut(s)	7, 207
RseI	CAYNNNNRTG	1 cut(s)	278
SatI	GCNGC	2 cut(s)	323, 326
Sau3AI	GATC	2 cut(s)	181, 220
Sau96I	GGNCC	2 cut(s)	141, 351
SchI	GAGTC	1 cut(s)	221
SetI	ASST	3 cut(s)	43, 208, 297
SfcI	CTRYAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	278
SsiI	CCGC	1 cut(s)	307
SspMI	CTAG	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	78, 99
TaaI	ACNGT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	353
TseI	GCWGC	2 cut(s)	322, 325
TspDTI	ATGAA	5 cut(s)	19, 60, 266, 375, 381
TspRI	CASTG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	345
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.