Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002962

Physical Location & Seq

Genomic Coordinates Forward (+)

21644275 .. 21644967

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1147800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCATGCAGTTCACCAGTTATTCCTACCTCGGCCGCTTCCGCCAGGACGGTAGACATTTTCAAAGAGCACAATGGTCTCCGCCGGTCTAACTCCAGCCAAGACCTTTACATTCGTGCTACTATGCGGAGGTCTTCTTCGGACAACCATCTTTGTTGCCGCATCAATCGTATCCACGCAGCAGCAACGGAACCAAAACTAAAGAACAGTCGTTCCATGGGGATTTTCCCGTTTCAGTTTTCGAGTTCCATTCTCCCAAACTCGGTGAGATCATCATTCTTTGATCCAGACACGAGTAATCATATGAGCATAGCGGAGAAGGACATGAGTACGGAGAACTCTGGGGAGAGTGCCAGTGAGGAGAGAAAAAGAACCAATTGGGTGGAGAGACTTGTAGAAATCAGAAGTAAATGGAGGAATAGGCAGAAAAAGGACGATGCGGATGAAGAGAGCGTCTGTGAAGCGGGTGAAAATGGTGAGTGTGAATGTGGCAGTGAGGAGGGTGGCTGTGCGGTGGATTATGCTGCAGAAGACGATGAGGGAGAAATCAGTCCTGAAGTTTTTCGGAGGTTTTTGGTTCGAGTGCCATGGTTTGATACCAAGCTGTTTTCCAAGTTATCCTTCTTATGCAACATGGCCTATGCGATACCACAACTCAAGGTACGTTCTTATTCAGCATATTTCACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

231

Amino Acids

26.0

Weight (kDa)

5.9

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61680 AT3G61680 AT3G61680
fragaria_vesca	FvH4_6g10421 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230 FvH4_7g16230
malus_domestica	MD01G1079000.v1.1 MD04G1169900.v1.1 MD07G1147800.v1.1 MD12G1184000.v1.1 MD14G1006300.v1.1
prunus_persica	Prupe.2G186100_v2.0.a1 Prupe.2G186100_v2.0.a1 Prupe.6G288500_v2.0.a1
pyrus_communis	pycom01g10730
rosa_chinensis	RchiOBHm_Chr1g0359261 RchiOBHm_Chr3g0461341
rosa_laevigata	RLG00000024940 RLG00000027889
rosa_multiflora	Rmu_ssc0000135.1_g000034 Rmu_ssc0000326.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297190 Rroxscaffold_6G00418380
rosa_rugosa	Rorug01G0268900 Rorug01G0269000 Rorug03G0049400
rosa_samantha	Rh1AG282800 Rh1BG249100 Rh1CG266900 Rh1DG278000 Rh3BG111500 Rh3DG113300
rosa_wichuraiana	Rw1G025110 Rw3G009170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	9 cut(s)	36, 42, 82, 127, 160, 314, 440, 464, 512
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	2 cut(s)	331, 663
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	604
AluI	AGCT	1 cut(s)	604
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	83, 382
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	2 cut(s)	33, 636
ApeKI	GCWGC	3 cut(s)	179, 182, 524
Asp700I	GAANNNNTTC	1 cut(s)	561
AsuHPI	GGTGA	4 cut(s)	6, 277, 479, 488
BauI	CACGAG	1 cut(s)	292
BbsI	GAAGAC	2 cut(s)	126, 537
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	191, 194, 511
BccI	CCATC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	83, 382
BfmI	CTRYAG	1 cut(s)	525
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	5 cut(s)	36, 160, 180, 183, 525
BlsI	GCNGC	5 cut(s)	37, 161, 181, 184, 526
Bme1390I	CCNGG	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	2 cut(s)	171, 427
BpiI	GAAGAC	2 cut(s)	126, 537
BpmI	CTGGAG	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	641
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	30, 216, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	17, 354
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	3 cut(s)	30, 216, 587
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseNI	ACTGG	2 cut(s)	17, 354
BseRI	GAGGAG	2 cut(s)	374, 512
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	191, 194, 511
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	35, 638
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	83, 382
BsnI	GGCC	2 cut(s)	35, 638
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	269, 283
Bsp19I	CCATGG	2 cut(s)	216, 587
BspACI	CCGC	9 cut(s)	36, 42, 82, 127, 160, 314, 440, 464, 512
BspANI	GGCC	2 cut(s)	35, 638
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	17, 354
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	30, 216, 587
BssMI	GATC	2 cut(s)	269, 283
BssSI	CACGAG	1 cut(s)	292
BssT1I	CCWWGG	2 cut(s)	216, 587
Bst2BI	CACGAG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	52, 209
Bst6I	CTCTTC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	7
BstDSI	CCRYGG	2 cut(s)	216, 587
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	2 cut(s)	272, 286
BstMAI	GTCTC	2 cut(s)	83, 382
BstMBI	GATC	2 cut(s)	269, 283
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	525
BstV1I	GCAGC	3 cut(s)	191, 194, 511
BstV2I	GAAGAC	2 cut(s)	126, 537
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	35, 638
BtgI	CCRYGG	2 cut(s)	216, 587
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	361, 499
Cac8I	GCNNGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	84
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	330, 662
CviAII	CATG	5 cut(s)	6, 217, 325, 588, 634
CviJI	RGCY	5 cut(s)	35, 99, 507, 604, 638
CviKI_1	RGCY	5 cut(s)	35, 99, 507, 604, 638
CviQI	GTAC	2 cut(s)	330, 662
DpnI	GATC	2 cut(s)	271, 285
DpnII	GATC	2 cut(s)	269, 283
EaeI	YGGCCR	1 cut(s)	33
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
EciI	GGCGGA	2 cut(s)	31, 71
EclXI	CGGCCG	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	216, 587
Eco31I	GGTCTC	1 cut(s)	83
Eco52I	CGGCCG	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	44
EcoT14I	CCWWGG	2 cut(s)	216, 587
ErhI	CCWWGG	2 cut(s)	216, 587
FaeI	CATG	5 cut(s)	9, 220, 328, 591, 637
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FatI	CATG	5 cut(s)	5, 216, 324, 587, 633
FauI	CCCGC	1 cut(s)	457
FauNDI	CATATG	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	5 cut(s)	36, 160, 180, 183, 525
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	5 cut(s)	36, 160, 180, 183, 525
GluI	GCNGC	5 cut(s)	36, 160, 180, 183, 525
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	35, 638
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	442
Hin1II	CATG	5 cut(s)	9, 220, 328, 591, 637
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	4 cut(s)	6, 277, 479, 488
Hpy166II	GTNNAC	2 cut(s)	14, 55
Hpy188I	TCNGA	3 cut(s)	142, 404, 567
Hpy188III	TCNNGA	2 cut(s)	287, 554
Hpy8I	GTNNAC	2 cut(s)	14, 55
HpyAV	CCTTC	2 cut(s)	313, 631
HpyCH4III	ACNGT	2 cut(s)	52, 209
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	3 cut(s)	9, 527, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	5 cut(s)	9, 220, 328, 591, 637
Kzo9I	GATC	2 cut(s)	269, 283
LpnPI	CCDG	9 cut(s)	30, 31, 58, 98, 109, 300, 327, 367, 567
Lsp1109I	GCAGC	3 cut(s)	191, 194, 511
LweI	GCATC	2 cut(s)	171, 427
MaeII	ACGT	1 cut(s)	664
MalI	GATC	2 cut(s)	271, 285
MboI	GATC	2 cut(s)	269, 283
MboII	GAAGA	4 cut(s)	126, 129, 458, 542
MfeI	CAATTG	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	2 cut(s)	376, 688
MnlI	CCTC	8 cut(s)	40, 123, 352, 408, 490, 493, 532, 561
MroXI	GAANNNNTTC	1 cut(s)	561
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	2 cut(s)	216, 587
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	2 cut(s)	269, 283
NlaIII	CATG	5 cut(s)	9, 220, 328, 591, 637
NlaIV	GGNNCC	1 cut(s)	192
NmeAIII	GCCGAG	1 cut(s)	11
NspI	RCATGY	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	561
PkrI	GCNGC	5 cut(s)	37, 161, 181, 184, 526
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	529
RsaI	GTAC	2 cut(s)	331, 663
RsaNI	GTAC	2 cut(s)	330, 662
SatI	GCNGC	5 cut(s)	36, 160, 180, 183, 525
Sau3AI	GATC	2 cut(s)	269, 283
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	7 cut(s)	32, 108, 134, 572, 606, 663, 667
SfaNI	GCATC	2 cut(s)	171, 427
SfcI	CTRYAG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SphI	GCATGC	1 cut(s)	9
Sse9I	AATT	2 cut(s)	376, 688
SsiI	CCGC	9 cut(s)	36, 42, 82, 127, 160, 314, 440, 464, 512
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	2 cut(s)	216, 587
TaaI	ACNGT	2 cut(s)	52, 209
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	2 cut(s)	242, 580
TasI	AATT	2 cut(s)	376, 688
TauI	GCSGC	2 cut(s)	38, 162
TscAI	CASTG	2 cut(s)	361, 499
TseI	GCWGC	3 cut(s)	179, 182, 524
TspDTI	ATGAA	1 cut(s)	459
TspGWI	ACGGA	2 cut(s)	203, 347
TspRI	CASTG	2 cut(s)	361, 499
XceI	RCATGY	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.