AT4G01020

Helicase domain-containing protein IBR domain-containing protein zinc finger protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009423
Physical Location & Seq
Forward (+)
438991 .. 445218
6228 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01020.1

Sequence Viewer

Length: 5364 bp
ATGAGGAACTCTTTTCCTCCTTCAGACGGTGGGAGATCGACGACTGATCGTCGTCAGCAGTCGTTTCCCTCATCCTCAACGAACCGTTATAACTCTCGCTCTGCACAATCTTCTCCGCCGCTCAACCACTGTACTACTTGGAACCAGCAACACTCTCAGTACCATAACACTAATTTCCCGCCAAATTACAGACGTGATCGTGCTCCGTCGTCGGGATTCTCTCCTCCAGTCACGCGGGCTAGGCCTAATTTCATCGTTCAGCTGCTTCACCCCGCCGCCGCTAACAGTGACACAAAGCTGTCTAAGAAGCAAGAGATCGAGAGTATCGCTTTGCTTTGCGAAATTCCGGAGGAATCAGTTCACGTGCCTCAATTTGGTTGTATCGCTGCAAGCTTCAGTTTTCGTCAGTGGGTCGATGCGCGTTCTGCCGTTGTGGCTCTTTGGGATTATCGTCTTCAAGGGAGACATGATTTTGTTCCTGAGCTGATTCCTAATGTTGTTGTTCCGTCTGACATGGACGAGCTTAAAGACAGGCTTCGTGATCTTTTCTCGTCTCATGTTCTTTCGCTTATGGAAAATGGACAAGGGGTCAAGAAGGTGAGAATGGAGATTGATGACAAGTCTCGTCAAGTTGCGTCCTTTTCGTCTAAAAGGGGTCTGAAATTTGAGGTTTTTGAGAAAAAGAAGGCTCTTGAAGCGGAGAGAGATTTGGTTGTGAATCGGCTTGACGAATTCAATAATGCCATGAAGAGCATTTTGCGATATCTCATAGGACAAGACGGGTATGAGTTTGATGTAGATGATGAAGATGACGAAGACGTGGCCGTGTTTTCTTTGGAAGGGGCCTATGATTGGAGACGTATTCATTATTTGATTCTTAGAGAGTGTCGAAGGCTAGAGGATGGACTGCCTATCTATGCCTACCGGCGGCAGATTTTGAAGAAAATTCATTGTGAACAGATAATGGTGTTGATTGGAGAAACTGGTTCAGGGAAGAGCACTCAGTTAGTTCAGTTCCTTGCTGATTCCGGAGTTGCTGCTAGTGAGTCGATTGTTTGTACACAACCACGGAAGATTGCTGCCATGACATTGACTGATCGGGTCAGAGAAGAAAGCAGTGGTTGTTATGAGGAAAATACTGTTTCTTGTACTCCAACTTTTTCGTCTACTGAGGAGATTAGTTCCAAAGTTGTATACATGACGGATAATTGTCTGCTTCAGCACTACATGAAAGATCGGAGTTTGTCTGGCATTTCATGTGTTATTATTGACGAAGCTCATGAAAGAAGCTTAAACACGGACCTTCTTTTGGCATTGCTTAGAAAGTTGCTATCCAGAAGGATTGACCTGAGGCTTGTTATCATGTCTGCCACGGCTGACGCCAACCAACTTTCACAGTATTTGTTCGATTGTGGTATTCTTCATGTCAATGGGAGGAACTTTCCGGTGGAGATTGTATATTCCCCTAGTGGCACAGAAGAGAATTCTGTTGTTGGCCGCATTGCTTCATATGCTGGTGATGTTGTTAAGATGGCAGTGGAAATACATAAAACAGAGAAAGAAGGAACCATCCTTGCATTCTTGACTTCCCAAGCAGAGGTAGAATGGGCATGCGAAAGGTTTGTAGCTCCGTCTGCAATTGCTTTGCCTTTGCATGGAAAGCTTTCCTTCGAAGAACAATTTATGGTTTTCCAGAACTATCCTGGGAGACGAAAAGTGATATTTGCCACGAATATTGCAGAGACGTCGCTGACTATTCCTGGTGTCAAGTATGTAATTGATTCCGGGATGGTGAAAGAGAGTAAATATGAACCTAGAACGGGTATGAGCATCCTAAAGGTGTGCCAGGTCAGTCAGAGTTCTGCTCGACAACGTGCTGGTCGTGCTGGAAGGACAGAACCCGGAAGATGTTACAGGCTCTACTCAAAAACCGATTTTGATTCAATGAATCTTAATCAAGAACCTGAAATTCGGAGGGTCCATCTTGGTGTAGCACTTTTGAGGATGCTTGCTTTGGGAATAGACAACATAGCGGCTTTTGAGTTTGTTGACGCGCCTGTCCCGGAAGCCATTGCAATGGCTATCCAAAATCTTGTTCAGTTGGGTGCAGTCGTTGAGAAGAACGGTGTTCTTGAATTAACACAGGAAGGGCATTGTTTAGTCAAGCTGGGGCTGGAACCAAAGCTTGGAAAGTTAATTTTAGGCTGCTTCAGACACAGAATGGGCAAAGAGGGGATTGTTCTTGCTGCTGTCATGGCTAATGCTAGTAGTATATTTTGCAGAGTTGGTAACTTTGATGATAAGATGAAAGCTGATCGCCTAAAGGTGCAATTCTGCAATGATAATGGAGACTTGTTCACTCTTCTTTCGGTGTACAAAGAATGGGCATCTCTGCCACGAGATAGAAGAAATAAATGGTGCTGGGAAAATAGCCTGAATGCCAAATCAATGAGGAGATGTGAAGACACAGTCAAGGAATTGGAGATATGCATTGAGAGAGAACTTACTCTTGTCAGCCCTAGTTACTGGGTTTGGAATCCAAATGAGGGTACTAAACACGACAAGTATTTGAAAATGGTTATACTTGCATCTCTTGCAGAAAACGTGGCGATGTACACTGGCTATGATCAGCTTGGATACGAGGTGGCATTGACTAGTCAACAAGTTCAGTTACATCCATCGTGTTCATTGCTAGCATTTGGCCAGAAGCCAAGCTGGGTTGTTTTCGGGGAACTTCTATCTATTGTGGACCAGTACTTGGTATGTGTAACTGCGTTTGATTTTGAAGCTTTGTATATGCTTGATCCACCACCACCTTTTGATGCATCCCAGATGGATGAGCGGAGGCTCCGAGTTAAAAAAGTGGTTGGTTGTAGTAGCACTGTGCTAAAACGATTCTGTGGGAAATCTAATCGTAGTCTGCTTTCAATTGTTTCTCGTGCTAGGTCTCTTTGTTCGGATGAAAGGATTGGTATCCAAGTCGATGTCGATCAGAATGAGATTCGACTGTATGCGTCTCCCCTCGACATGGAAAAAGTGTCAGCCCTTGTGAACGATGCATTGGAATGTGAAAAGAAATGGATGCGTAATGAATGTTTGGAGAAGTATCTATTTCATGGTCGGGGACAAATACCTATTGCACTGTTTGGATCTGGTGCTCAGATAAAGCATCTTGAAGTTGATCAGAGATTTCTGACAGTCGATGTACATTATTATGGCGACGATGTTGTTGATGACAGAGAGCTTCTGACGTTTCTGGAGAAGAAGATTGATGGGTGTATCTGCTCTATTTACAAGTTTGCTGCGAACAAGCAAGACTGTGATGAGAAGGAGAAGTGGGGTAGAATAACCTTTCTCACTCCAGAATCTGCTATGAAGGCAACAGAAATTCAGAAATTTGATTTCAAAGGATCAGTGCTCAAAGTATTTCCATCACTGTCAACTGGTGGAGGAATTTTCAAGATGCCTTATTTCTCTTCCGTGACAGCTAAGATTCGTTGGCCGAGAAAGGAAAGTAGTGGTAGAGGATGCCTTAAGTGCCCTTCCGGAGATATTCACAGTATACTTGGTGATATAACCAGCCTTGAGATAGGAACAAATTATGTCCATATTCAGAGAGATCAACTGTCCAATGATTCTATCTTGATAAGTGGACTTGGAGATCTTTCGGAAGCAGAAGTTTTAGATGTTTTGGAATTCAGAACGCAGAGAAGAGATCTGAATTTTTTCATATTCAGAAAAAAATACAGTGTGCAGTGCCCATCTCCTACTGCTTGCGAAGAAGAGCTTCATAAGAGAATATTTGCGCGCATGTCAGCAAAGAATCCAGAGCCAAACTGTGTCCAAGTTCAAGTTTTTGAACCAAAAGAAGACAATTACTTCATGCGAGCGTTAATTAAGTTTGACGGGAGATTACATCTCGAAGCTGCAAAAGCTTTGCAAGAGTTAAATGGGGAGGTGTTACCTGGATGTCTTCCATGGCAGAAGATAAAGTGCGAACAATTGTTTCAGAGCTCCATAATCTGCTCCGCTTCTATCTACAACACTGTCAAAAGACAATTGAACGTTTTATTAGCAAGGTTTGAGAGACAAAAAGGGGGTGAATGCTGTCTGGAACCAACTCATAACGGGGCTTATCGTGTTAAAATTACTGCTTATGCAACAAGACCCGTTGCGGAGATGCGGAGAGAGCTTGAAGAACTCTTAAGAGGAAAACCCATAAACCATCCAGGCTTCACACCTAGAGTCGTGCAGCATCTTATGTCCAGAGATGGTATTAATCTGATGCGGAAGATCCAACAGGAGACAGAAACTTACATTCTATTAGATAGGCACAATCTCACAGTACGCATTTGTGGAACAAGTGAGAAAATTGCCAAGGCAGAACAAGAACTGGTTCAGTCACTTATGGATTATCATGAGAGCAAGCAACTTGAAATCCACCTCCGAGGTCCTGAGATCCGTCCTGACCTCATGAAGGAAGTTGTGAAGCGGTTTGGTCCGGAGCTCCAAGGTATCAAAGAAAAGGTGCATGGTGTGGATCTCAAGCTCAATACCCGGTACCATGTTATTCAGGTTCATGGGAGCAAAGAAATGAGGCAGGAAGTACAAAAGATGGTCAATGAACTTGCACGAGAAAAGAGTGCACTGGGTGAAAAACCAGATGAGATTGAACTTGAATGCCCCATTTGCTTGTCTGAAGTTGATGATGGCTACTCTCTTGAAGGATGTTCACACCTCTTCTGCAAAGCTTGTTTGTTGGAGCAATTTGAGGCATCGATGAGAAACTTTGACGCATTCCCAATACTTTGTTCTCACATAGACTGTGGAGCTCCAATAGTAGTCGCTGATATGAGAGCCCTCTTATCACAAGAGAAGCTCGATGAACTCATCAGTGCATCCTTGTCCGCTTTTGTAACATCCAGTGATGGAAAGTTGAGGTTTTGCTCCACACCTGATTGCCCTTCCATCTACCGTGTAGCTGGACCTCAAGAATCCGGTGAGCCATTCATCTGTGGAGCATGTCACTCAGAAACATGCACAAGGTGTCACCTCGAGTATCACCCGTTAATCACTTGTGAAAGGTACAAAAAGTTCAAGGAGAATCCGGACTTGTCGCTTAAGGACTGGGCAAAAGGGAAGGACGTAAAGGAGTGTCCGATTTGCAAGTCGACGATAGAGAAGACTGATGGGTGTAACCATCTGCAGTGCCGGTGTGGAAAGCACATTTGTTGGACCTGCTTAGACGTCTTCACTCAGGCAGAACCTTGTTATGCCCATTTAAGGACAATTCATGGTGGAATCGGATTAGTCGAGTTAGGTGTCCCAGAGCACCCTGTTGCCCAGCCTGTTCACAGGCTTTGA

Protein Analysis

1787

Amino Acids

202.13

Weight (kDa)

6.58

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 310 - 461 1.4e-09 DEAD/DEAH box helicase
Helicase_C PF00271 511 - 632 1e-13 Helicase conserved C-terminal domain
OB_NTP_bind PF07717 857 - 934 8.5e-10 Oligonucleotide/oligosaccharide-binding (OB)-fold
RBD_DEAH11 PF24475 1033 - 1145 2.8e-47 DEAH11-like, RNA-binding domain
RRM_DEAH11 PF24637 1168 - 1247 8e-27 DEAH11 RRM domain
KH_DEAH11_1st PF24638 1338 - 1402 1.4e-28 DEAH11 eukaryotic type KH-domain
KH_DEAH11_2nd PF24641 1403 - 1477 1e-35 DEAH11 eukaryotic type KH-domain
KH_DEAH11 PF24471 1478 - 1546 9.1e-27 DEAH11-like, KH-domain
IBR PF01485 1633 - 1693 1.1e-09 IBR domain, a half RING-finger domain
IBR_1 PF22191 1716 - 1753 8.1e-06 IBR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AasI GACNNNNNNGTC 1 cut(s) 2057
AatII GACGTC 2 cut(s) 1748, 5250
Acc36I ACCTGC 1 cut(s) 5246
Acc65I GGTACC 1 cut(s) 4560
AccB1I GGYRCC 1 cut(s) 4560
AccB7I CCANNNNNTGG 2 cut(s) 2186, 2758
AccBSI CCGCTC 2 cut(s) 121, 2842
AccI GTMKAC 4 cut(s) 1166, 1194, 3562, 5171
AccII CGCG 4 cut(s) 235, 421, 2054, 3808
AccIII TCCGGA 5 cut(s) 346, 1028, 3545, 4501, 5107
AclI AACGTT 1 cut(s) 4065
AclWI GGATC 6 cut(s) 2798, 3157, 3418, 4288, 4453, 4548
AcoI YGGCCR 4 cut(s) 822, 1495, 2701, 3500
AcuI CTGAAG 5 cut(s) 6, 379, 1202, 2194, 4719
AcvI CACGTG 1 cut(s) 364
AcyI GRCGYC 3 cut(s) 1380, 1745, 5247
AdeI CACNNNGTG 2 cut(s) 4652, 5046
AflII CTTAAG 3 cut(s) 3533, 4204, 5120
AhdI GACNNNNNGTC 2 cut(s) 48, 587
AhlI ACTAGT 1 cut(s) 2654
AjiI CACGTC 2 cut(s) 194, 820
AjnI CCWGG 5 cut(s) 1702, 1759, 1845, 3964, 4228
AjuI GAANNNNNNNTTGG 8 cut(s) 2079, 2111, 2169, 2201, 3044, 3076, 4795, 4827
Alw21I GWGCWC 9 cut(s) 205, 1001, 3160, 3420, 4016, 4509, 4648, 4834, 5334
Alw44I GTGCAC 1 cut(s) 4644
AlwI GGATC 6 cut(s) 2798, 3157, 3418, 4288, 4453, 4548
AlwNI CAGNNNCTG 1 cut(s) 3368
Ama87I CYCGRG 1 cut(s) 5054
Aor13HI TCCGGA 5 cut(s) 346, 1028, 3545, 4501, 5107
AoxI GGCC 6 cut(s) 242, 822, 843, 1495, 2701, 3500
ApaLI GTGCAC 1 cut(s) 4644
ApeKI GCWGC 9 cut(s) 262, 386, 1037, 1079, 2205, 2246, 3302, 3926, 4252
AseI ATTAAT 1 cut(s) 4278
Asp700I GAANNNNTTC 5 cut(s) 357, 1663, 3725, 3786, 4395
Asp718I GGTACC 1 cut(s) 4560
AspLEI GCGC 4 cut(s) 421, 2056, 3808, 3810
AspS9I GGNCC 8 cut(s) 843, 1300, 1978, 2749, 4451, 4499, 4985, 5235
AsuC2I CCSGG 4 cut(s) 1786, 1902, 2063, 4558
AsuII TTCGAA 1 cut(s) 1671
AsuNHI GCTAGC 1 cut(s) 2692
AvaI CYCGRG 1 cut(s) 5054
AvaII GGWCC 7 cut(s) 1300, 1978, 2749, 4451, 4499, 4985, 5235
AxyI CCTNAGG 1 cut(s) 1349
BaeGI GKGCMC 3 cut(s) 3542, 3761, 4648
BalI TGGCCA 1 cut(s) 2703
BanI GGYRCC 1 cut(s) 4560
BanII GRGCYC 4 cut(s) 4016, 4509, 4834, 4861
BauI CACGAG 3 cut(s) 2397, 2937, 4632
BbrPI CACGTG 1 cut(s) 364
BbsI GAAGAC 7 cut(s) 446, 822, 2469, 3876, 3965, 5189, 5242
Bbv12I GWGCWC 9 cut(s) 205, 1001, 3160, 3420, 4016, 4509, 4648, 4834, 5334
BbvI GCAGC 9 cut(s) 249, 373, 1024, 1066, 2192, 2233, 3289, 3913, 4264
BceAI ACGGC 3 cut(s) 413, 809, 1389
BcgI CGANNNNNNTGC 2 cut(s) 1728, 1762
BciT130I CCWGG 5 cut(s) 1704, 1761, 1847, 3966, 4230
BciVI GTATCC 2 cut(s) 2630, 2984
BclI TGATCA 2 cut(s) 2626, 3181
BcnI CCSGG 4 cut(s) 1786, 1902, 2063, 4558
BcuI ACTAGT 1 cut(s) 2654
BfmI CTRYAG 1 cut(s) 5204
BfrI CTTAAG 3 cut(s) 3533, 4204, 5120
BfuAI ACCTGC 1 cut(s) 5246
BfuI GTATCC 2 cut(s) 2630, 2984
BglI GCCNNNNNGGC 1 cut(s) 434
BglII AGATCT 2 cut(s) 3661, 3715
BmcAI AGTACT 1 cut(s) 2756
Bme1390I CCNGG 9 cut(s) 1704, 1761, 1786, 1847, 1902, 2063, 3966, 4230, 4558
Bme18I GGWCC 7 cut(s) 1300, 1978, 2749, 4451, 4499, 4985, 5235
BmeRI GACNNNNNGTC 2 cut(s) 48, 587
BmeT110I CYCGRG 1 cut(s) 5054
BmgBI CACGTC 2 cut(s) 194, 820
BmgT120I GGNCC 8 cut(s) 843, 1300, 1978, 2749, 4451, 4499, 4985, 5235
BmiI GGNNCC 8 cut(s) 143, 844, 1567, 1979, 2178, 2849, 4116, 4562
BmrFI CCNGG 9 cut(s) 1704, 1761, 1786, 1847, 1902, 2063, 3966, 4230, 4558
BmrI ACTGGG 3 cut(s) 2536, 4658, 5137
BmtI GCTAGC 1 cut(s) 2696
BmuI ACTGGG 3 cut(s) 2536, 4658, 5137
BpiI GAAGAC 7 cut(s) 446, 822, 2469, 3876, 3965, 5189, 5242
BplI GAGNNNNNCTC 2 cut(s) 1849, 1881
BpmI CTGGAG 3 cut(s) 210, 3278, 3345
Bpu10I CCTNAGC 1 cut(s) 480
Bpu14I TTCGAA 1 cut(s) 1671
BpuEI CTTGAG 3 cut(s) 3605, 4529, 4974
BpuMI CCSGG 4 cut(s) 1786, 1902, 2063, 4558
Bsa29I ATCGAT 1 cut(s) 4778
BsaAI YACGTR 1 cut(s) 364
BsaBI GATNNNNATC 2 cut(s) 2972, 2988
BsaHI GRCGYC 3 cut(s) 1380, 1745, 5247
BsaI GGTCTC 1 cut(s) 2952
BsaJI CCNNGG 7 cut(s) 1067, 1371, 1703, 3977, 4377, 4447, 4510
BsaWI WCCGGW 7 cut(s) 346, 1028, 1444, 3545, 4501, 4997, 5107
Bse118I RCCGGY 2 cut(s) 924, 5211
Bse21I CCTNAGG 1 cut(s) 1349
Bse3DI GCAATG 6 cut(s) 1313, 1500, 2070, 2082, 2344, 2687
Bse8I GATNNNNATC 2 cut(s) 2972, 2988
BseAI TCCGGA 5 cut(s) 346, 1028, 3545, 4501, 5107
BseBI CCWGG 5 cut(s) 1704, 1761, 1847, 3966, 4230
BseCI ATCGAT 1 cut(s) 4778
BseDI CCNNGG 7 cut(s) 1067, 1371, 1703, 3977, 4377, 4447, 4510
BseJI GATNNNNATC 2 cut(s) 2972, 2988
BseMI GCAATG 6 cut(s) 1313, 1500, 2070, 2082, 2344, 2687
BseMII CTCAG 9 cut(s) 170, 471, 1016, 1161, 1340, 3173, 4446, 5043, 5270
BsePI GCGCGC 1 cut(s) 3806
BseRI GAGGAG 3 cut(s) 213, 1187, 2467
BseSI GKGCMC 3 cut(s) 3542, 3761, 4648
BseXI GCAGC 9 cut(s) 249, 373, 1024, 1066, 2192, 2233, 3289, 3913, 4264
BseYI CCCAGC 4 cut(s) 2167, 2421, 2715, 5343
BsgI GTGCAG 4 cut(s) 87, 2127, 3773, 4271
Bsh1236I CGCG 4 cut(s) 235, 421, 2054, 3808
BshFI GGCC 6 cut(s) 244, 824, 845, 1497, 2703, 3502
BshNI GGYRCC 1 cut(s) 4560
BshVI ATCGAT 1 cut(s) 4778
BsiHKAI GWGCWC 9 cut(s) 205, 1001, 3160, 3420, 4016, 4509, 4648, 4834, 5334
BsiHKCI CYCGRG 1 cut(s) 5054
BslFI GGGAC 3 cut(s) 2045, 3138, 5309
BsmBI CGTCTC 5 cut(s) 558, 850, 1702, 1736, 3021
BsmFI GGGAC 3 cut(s) 2045, 3138, 5309
BsmI GAATGC 5 cut(s) 1577, 2443, 4109, 4685, 4796
BsnI GGCC 6 cut(s) 244, 824, 845, 1497, 2703, 3502
Bso31I GGTCTC 1 cut(s) 2952
BsoBI CYCGRG 1 cut(s) 5054
Bsp119I TTCGAA 1 cut(s) 1671
Bsp13I TCCGGA 5 cut(s) 346, 1028, 3545, 4501, 5107
Bsp1407I TGTACA 4 cut(s) 1058, 2373, 2613, 3205
Bsp19I CCATGG 1 cut(s) 3977
BspANI GGCC 6 cut(s) 244, 824, 845, 1497, 2703, 3502
BspCNI CTCAG 9 cut(s) 169, 472, 1015, 1162, 1341, 3172, 4447, 5042, 5269
BspDI ATCGAT 1 cut(s) 4778
BspEI TCCGGA 5 cut(s) 346, 1028, 3545, 4501, 5107
BspFNI CGCG 4 cut(s) 235, 421, 2054, 3808
BspHI TCATGA 3 cut(s) 1279, 4417, 4473
BspLI GGNNCC 8 cut(s) 143, 844, 1567, 1979, 2178, 2849, 4116, 4562
BspMAI CTGCAG 1 cut(s) 5208
BspMI ACCTGC 1 cut(s) 5246
BspOI GCTAGC 1 cut(s) 2696
BspPI GGATC 6 cut(s) 2798, 3157, 3418, 4288, 4453, 4548
BspQI GCTCTTC 3 cut(s) 743, 989, 3777
BspT104I TTCGAA 1 cut(s) 1671
BspT107I GGYRCC 1 cut(s) 4560
BspTI CTTAAG 3 cut(s) 3533, 4204, 5120
BspTNI GGTCTC 1 cut(s) 2952
BsrBI CCGCTC 2 cut(s) 121, 2842
BsrDI GCAATG 6 cut(s) 1313, 1500, 2070, 2082, 2344, 2687
BsrFI RCCGGY 2 cut(s) 924, 5211
BsrGI TGTACA 4 cut(s) 1058, 2373, 2613, 3205
BssAI RCCGGY 2 cut(s) 924, 5211
BssECI CCNNGG 7 cut(s) 1067, 1371, 1703, 3977, 4377, 4447, 4510
BssHII GCGCGC 1 cut(s) 3806
BssNAI GTATAC 2 cut(s) 1195, 3563
BssNI GRCGYC 3 cut(s) 1380, 1745, 5247
BssSI CACGAG 3 cut(s) 2397, 2937, 4632
BssT1I CCWWGG 3 cut(s) 3977, 4377, 4510
Bst1107I GTATAC 2 cut(s) 1195, 3563
Bst2BI CACGAG 3 cut(s) 2397, 2937, 4632
Bst2UI CCWGG 5 cut(s) 1704, 1761, 1847, 3966, 4230
Bst6I CTCTTC 8 cut(s) 743, 989, 1473, 2367, 3481, 3706, 3777, 4745
BstACI GRCGYC 3 cut(s) 1380, 1745, 5247
BstAFI CTTAAG 3 cut(s) 3533, 4204, 5120
BstAPI GCANNNNNTGC 1 cut(s) 2594
BstAUI TGTACA 4 cut(s) 1058, 2373, 2613, 3205
BstBAI YACGTR 1 cut(s) 364
BstBI TTCGAA 1 cut(s) 1671
BstC8I GCNNGC 9 cut(s) 237, 391, 1612, 2010, 2694, 3775, 3808, 3888, 4427
BstDSI CCRYGG 3 cut(s) 1067, 1371, 3977
BstENI CCTNNNNNAGG 1 cut(s) 4475
BstFNI CGCG 4 cut(s) 235, 421, 2054, 3808
BstHHI GCGC 4 cut(s) 421, 2056, 3808, 3810
BstNI CCWGG 5 cut(s) 1704, 1761, 1847, 3966, 4230
BstNSI RCATGY 4 cut(s) 1614, 3814, 5025, 5040
BstSCI CCNGG 9 cut(s) 1702, 1759, 1784, 1845, 1900, 2061, 3964, 4228, 4556
BstSFI CTRYAG 1 cut(s) 5204
BstSLI GKGCMC 3 cut(s) 3542, 3761, 4648
BstUI CGCG 4 cut(s) 235, 421, 2054, 3808
BstV1I GCAGC 9 cut(s) 249, 373, 1024, 1066, 2192, 2233, 3289, 3913, 4264
BstV2I GAAGAC 7 cut(s) 446, 822, 2469, 3876, 3965, 5189, 5242
BstX2I RGATCY 6 cut(s) 3149, 3661, 3715, 4293, 4458, 4540
BstXI CCANNNNNNTGG 1 cut(s) 2077
BstYI RGATCY 6 cut(s) 3149, 3661, 3715, 4293, 4458, 4540
BstZ17I GTATAC 2 cut(s) 1195, 3563
Bsu15I ATCGAT 1 cut(s) 4778
Bsu36I CCTNAGG 1 cut(s) 1349
BsuI GTATCC 2 cut(s) 2630, 2984
BsuRI GGCC 6 cut(s) 244, 824, 845, 1497, 2703, 3502
BsuTUI ATCGAT 1 cut(s) 4778
BtgI CCRYGG 3 cut(s) 1067, 1371, 3977
BtgZI GCGATG 1 cut(s) 2624
BtrI CACGTC 2 cut(s) 194, 820
BtsI GCAGTG 4 cut(s) 1123, 1542, 3761, 5213
BveI ACCTGC 1 cut(s) 5246
Cac8I GCNNGC 9 cut(s) 237, 391, 1612, 2010, 2694, 3775, 3808, 3888, 4427
CaiI CAGNNNCTG 1 cut(s) 3368
CciI TCATGA 3 cut(s) 1279, 4417, 4473
CfoI GCGC 4 cut(s) 421, 2056, 3808, 3810
Cfr10I RCCGGY 2 cut(s) 924, 5211
Cfr13I GGNCC 8 cut(s) 843, 1300, 1978, 2749, 4451, 4499, 4985, 5235
ClaI ATCGAT 1 cut(s) 4778
CseI GACGC 5 cut(s) 624, 1388, 2060, 3003, 4802
CspCI CAANNNNNGTGG 2 cut(s) 1717, 1752
DraIII CACNNNGTG 2 cut(s) 4652, 5046
DrdI GACNNNNNNGTC 1 cut(s) 2057
DriI GACNNNNNGTC 2 cut(s) 48, 587
DseDI GACNNNNNNGTC 1 cut(s) 2057
EaeI YGGCCR 4 cut(s) 822, 1495, 2701, 3500
Eam1104I CTCTTC 8 cut(s) 743, 989, 1473, 2367, 3481, 3706, 3777, 4745
Eam1105I GACNNNNNGTC 2 cut(s) 48, 587
EarI CTCTTC 8 cut(s) 743, 989, 1473, 2367, 3481, 3706, 3777, 4745
EciI GGCGGA 1 cut(s) 105
Ecl136II GAGCTC 3 cut(s) 4014, 4507, 4832
Eco130I CCWWGG 3 cut(s) 3977, 4377, 4510
Eco147I AGGCCT 1 cut(s) 244
Eco24I GRGCYC 4 cut(s) 4016, 4509, 4834, 4861
Eco31I GGTCTC 1 cut(s) 2952
Eco32I GATATC 1 cut(s) 764
Eco47I GGWCC 7 cut(s) 1300, 1978, 2749, 4451, 4499, 4985, 5235
Eco53kI GAGCTC 3 cut(s) 4014, 4507, 4832
Eco57I CTGAAG 5 cut(s) 6, 379, 1202, 2194, 4719
Eco72I CACGTG 1 cut(s) 364
Eco81I CCTNAGG 1 cut(s) 1349
Eco88I CYCGRG 1 cut(s) 5054
EcoICRI GAGCTC 3 cut(s) 4014, 4507, 4832
EcoNI CCTNNNNNAGG 1 cut(s) 4475
EcoO109I RGGNCCY 2 cut(s) 843, 4451
EcoRI GAATTC 3 cut(s) 731, 1483, 3695
EcoRII CCWGG 5 cut(s) 1702, 1759, 1845, 3964, 4228
EcoRV GATATC 1 cut(s) 764
EcoT14I CCWWGG 3 cut(s) 3977, 4377, 4510
EcoT22I ATGCAT 3 cut(s) 2492, 2827, 3061
EcoT38I GRGCYC 4 cut(s) 4016, 4509, 4834, 4861
ErhI CCWWGG 3 cut(s) 3977, 4377, 4510
Esp3I CGTCTC 5 cut(s) 558, 850, 1702, 1736, 3021
FalI AAGNNNNNCTT 6 cut(s) 519, 551, 1652, 1684, 3771, 3803
FaqI GGGAC 3 cut(s) 2045, 3138, 5309
FauI CCCGC 3 cut(s) 186, 228, 280
FauNDI CATATG 1 cut(s) 1510
FbaI TGATCA 2 cut(s) 2626, 3181
FblI GTMKAC 4 cut(s) 1166, 1194, 3562, 5171
FriOI GRGCYC 4 cut(s) 4016, 4509, 4834, 4861
GlaI GCGC 4 cut(s) 420, 2055, 3807, 3809
GsaI CCCAGC 4 cut(s) 2171, 2425, 2719, 5347
GsuI CTGGAG 3 cut(s) 210, 3278, 3345
HaeIII GGCC 6 cut(s) 244, 824, 845, 1497, 2703, 3502
HgaI GACGC 5 cut(s) 624, 1388, 2060, 3003, 4802
HhaI GCGC 4 cut(s) 421, 2056, 3808, 3810
Hin1I GRCGYC 3 cut(s) 1380, 1745, 5247
Hin6I GCGC 4 cut(s) 419, 2054, 3806, 3808
HinP1I GCGC 4 cut(s) 419, 2054, 3806, 3808
HincII GTYRAC 4 cut(s) 2050, 2660, 3441, 5172
HindII GTYRAC 4 cut(s) 2050, 2660, 3441, 5172
HindIII AAGCTT 7 cut(s) 391, 1288, 1661, 2183, 2787, 3933, 4749
Hpy99I CGWCG 7 cut(s) 43, 54, 211, 214, 1750, 3224, 5176
Hsp92I GRCGYC 3 cut(s) 1380, 1745, 5247
HspAI GCGC 4 cut(s) 419, 2054, 3806, 3808
Kpn2I TCCGGA 5 cut(s) 346, 1028, 3545, 4501, 5107
KpnI GGTACC 1 cut(s) 4564
Ksp22I TGATCA 2 cut(s) 2626, 3181
LguI GCTCTTC 3 cut(s) 743, 989, 3777
Lsp1109I GCAGC 9 cut(s) 249, 373, 1024, 1066, 2192, 2233, 3289, 3913, 4264
MbiI CCGCTC 2 cut(s) 121, 2842
MfeI CAATTG 4 cut(s) 1638, 2928, 4001, 4058
MflI RGATCY 6 cut(s) 3149, 3661, 3715, 4293, 4458, 4540
MlsI TGGCCA 1 cut(s) 2703
MluNI TGGCCA 1 cut(s) 2703
MlyI GAGTC 2 cut(s) 1055, 4254
MmeI TCCRAC 4 cut(s) 1178, 4321, 4740, 5213
Mox20I TGGCCA 1 cut(s) 2703
Mph1103I ATGCAT 3 cut(s) 2492, 2827, 3061
MroI TCCGGA 5 cut(s) 346, 1028, 3545, 4501, 5107
MroXI GAANNNNTTC 5 cut(s) 357, 1663, 3725, 3786, 4395
MscI TGGCCA 1 cut(s) 2703
MslI CAYNNNNRTG 5 cut(s) 1428, 1986, 2075, 3064, 3213
Msp20I TGGCCA 1 cut(s) 2703
MspA1I CMGCKG 1 cut(s) 262
MspCI CTTAAG 3 cut(s) 3533, 4204, 5120
MspR9I CCNGG 9 cut(s) 1704, 1761, 1786, 1847, 1902, 2063, 3966, 4230, 4558
MunI CAATTG 4 cut(s) 1638, 2928, 4001, 4058
Mva1269I GAATGC 5 cut(s) 1577, 2443, 4109, 4685, 4796
MvaI CCWGG 5 cut(s) 1704, 1761, 1847, 3966, 4230
MvnI CGCG 4 cut(s) 235, 421, 2054, 3808
NciI CCSGG 4 cut(s) 1786, 1902, 2063, 4558
NcoI CCATGG 1 cut(s) 3977
NdeI CATATG 1 cut(s) 1510
NheI GCTAGC 1 cut(s) 2692
NlaIV GGNNCC 8 cut(s) 143, 844, 1567, 1979, 2178, 2849, 4116, 4562
NmeAIII GCCGAG 1 cut(s) 3528
NmuCI GTSAC 6 cut(s) 229, 287, 3481, 4401, 5024, 5048
NsiI ATGCAT 3 cut(s) 2492, 2827, 3061
NspI RCATGY 4 cut(s) 1614, 3814, 5025, 5040
NspV TTCGAA 1 cut(s) 1671
PacI TTAATTAA 1 cut(s) 3897
PaeI GCATGC 1 cut(s) 1614
PaeR7I CTCGAG 1 cut(s) 5054
PagI TCATGA 3 cut(s) 1279, 4417, 4473
PauI GCGCGC 1 cut(s) 3806
PceI AGGCCT 1 cut(s) 244
PciSI GCTCTTC 3 cut(s) 743, 989, 3777
PcsI WCGNNNNNNNCGW 2 cut(s) 1879, 5310
PctI GAATGC 5 cut(s) 1577, 2443, 4109, 4685, 4796
PdmI GAANNNNTTC 5 cut(s) 357, 1663, 3725, 3786, 4395
PflFI GACNNNGTC 1 cut(s) 2468
PflMI CCANNNNNTGG 2 cut(s) 2186, 2758
PfoI TCCNGGA 2 cut(s) 1784, 2061
PleI GAGTC 2 cut(s) 1054, 4253
PmaCI CACGTG 1 cut(s) 364
PmlI CACGTG 1 cut(s) 364
PpsI GAGTC 2 cut(s) 1054, 4253
Ppu21I YACGTR 1 cut(s) 364
PpuMI RGGWCCY 1 cut(s) 4451
PshBI ATTAAT 1 cut(s) 4278
PsiI TTATAA 1 cut(s) 90
Psp124BI GAGCTC 3 cut(s) 4016, 4509, 4834
Psp1406I AACGTT 1 cut(s) 4065
Psp5II RGGWCCY 1 cut(s) 4451
Psp6I CCWGG 5 cut(s) 1702, 1759, 1845, 3964, 4228
PspCI CACGTG 1 cut(s) 364
PspFI CCCAGC 4 cut(s) 2167, 2421, 2715, 5343
PspGI CCWGG 5 cut(s) 1702, 1759, 1845, 3964, 4228
PspN4I GGNNCC 8 cut(s) 143, 844, 1567, 1979, 2178, 2849, 4116, 4562
PspPI GGNCC 8 cut(s) 843, 1300, 1978, 2749, 4451, 4499, 4985, 5235
PspPPI RGGWCCY 1 cut(s) 4451
PspXI VCTCGAGB 1 cut(s) 5054
PsrI GAACNNNNNNTAC 2 cut(s) 5078, 5110
PstI CTGCAG 1 cut(s) 5208
PstNI CAGNNNCTG 1 cut(s) 3368
PsuI RGATCY 6 cut(s) 3149, 3661, 3715, 4293, 4458, 4540
PsyI GACNNNGTC 1 cut(s) 2468
PteI GCGCGC 1 cut(s) 3806
PvuII CAGCTG 1 cut(s) 262
RseI CAYNNNNRTG 5 cut(s) 1428, 1986, 2075, 3064, 3213
SacI GAGCTC 3 cut(s) 4016, 4509, 4834
SalI GTCGAC 1 cut(s) 5170
SapI GCTCTTC 3 cut(s) 743, 989, 3777
Sau96I GGNCC 8 cut(s) 843, 1300, 1978, 2749, 4451, 4499, 4985, 5235
ScaI AGTACT 1 cut(s) 2756
SchI GAGTC 2 cut(s) 1055, 4254
ScrFI CCNGG 9 cut(s) 1704, 1761, 1786, 1847, 1902, 2063, 3966, 4230, 4558
SfcI CTRYAG 1 cut(s) 5204
Sfr274I CTCGAG 1 cut(s) 5054
SfuI TTCGAA 1 cut(s) 1671
SinI GGWCC 7 cut(s) 1300, 1978, 2749, 4451, 4499, 4985, 5235
SlaI CTCGAG 1 cut(s) 5054
SmiMI CAYNNNNRTG 5 cut(s) 1428, 1986, 2075, 3064, 3213
SmlI CTYRAG 7 cut(s) 3533, 3584, 4204, 4544, 4989, 5054, 5120
SmoI CTYRAG 7 cut(s) 3533, 3584, 4204, 4544, 4989, 5054, 5120
SpeI ACTAGT 1 cut(s) 2654
SphI GCATGC 1 cut(s) 1614
SseBI AGGCCT 1 cut(s) 244
SspI AATATT 2 cut(s) 1735, 3801
SstI GAGCTC 3 cut(s) 4016, 4509, 4834
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 9 cut(s) 1702, 1759, 1784, 1845, 1900, 2061, 3964, 4228, 4556
StyI CCWWGG 3 cut(s) 3977, 4377, 4510
TatI WGTACW 8 cut(s) 131, 1058, 1148, 2373, 2613, 2754, 3205, 4606
TauI GCSGC 6 cut(s) 121, 278, 281, 931, 1500, 2036
TseFI GTSAC 6 cut(s) 229, 287, 3481, 4401, 5024, 5048
TseI GCWGC 9 cut(s) 262, 386, 1037, 1079, 2205, 2246, 3302, 3926, 4252
Tsp45I GTSAC 6 cut(s) 229, 287, 3481, 4401, 5024, 5048
TspGWI ACGGA 8 cut(s) 195, 495, 1084, 1217, 1313, 1620, 3469, 4451
Tth111I GACNNNGTC 1 cut(s) 2468
Van91I CCANNNNNTGG 2 cut(s) 2186, 2758
Vha464I CTTAAG 3 cut(s) 3533, 4204, 5120
VneI GTGCAC 1 cut(s) 4644
VpaK11BI GGWCC 7 cut(s) 1300, 1978, 2749, 4451, 4499, 4985, 5235
VspI ATTAAT 1 cut(s) 4278
XagI CCTNNNNNAGG 1 cut(s) 4475
XceI RCATGY 4 cut(s) 1614, 3814, 5025, 5040
XcmI CCANNNNNNNNNTGG 1 cut(s) 1700
XhoI CTCGAG 1 cut(s) 5054
XmiI GTMKAC 4 cut(s) 1166, 1194, 3562, 5171
XmnI GAANNNNTTC 5 cut(s) 357, 1663, 3725, 3786, 4395
ZraI GACGTC 2 cut(s) 1746, 5248
ZrmI AGTACT 1 cut(s) 2756
Zsp2I ATGCAT 3 cut(s) 2492, 2827, 3061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.