Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009423

Physical Location & Seq

Genomic Coordinates Reverse (-)

24408821 .. 24416745

Gene Structure 7925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG236400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4104 bp

ATGAGGGGATCAAAGCCGGCCGGAATGTCTGAGCAGCGACGATTTTATCCGCAACCAGGGTCCCACCCACGCGCCGCCGTTCCGCGACGGCCGTTGCCTCGAATTCAGCGGCCGAATTTCATCGTTTATCTTCTGTCCGACAAACGGGACCTCCGGCGGCCGGACATCGAGGCGGTGATCAACCAGTGCAGGGCGAAGCCGGAGAATTTCCGGGTGAGTCCGGAGAACAACACAGTCGCGTCGATGTTCTACGCGCAGTGGTACGACGCGCTCGAAGCGATGGTCTGGCTGTGGGAGTCGCGGCTCGACCGGGTTCACAATTTCATGCCCAAGCTTGACGCCAACGACTCCGTCTCCACGCCGTCCGATAGCGTGGAGCTGGAGGACCGCCTGAGAGCCTTGTTCGCCGGCCGAATTAAGCAGTTAATCGACGGCGACGAGGTGAAGAAGTGTGAAGCAAAGCGCCAAATTTTGGCCAGAGAGTACGACCGAGTTCGTAAGCTGGCCAAGAGGCCTCAGAGGAATTGGGAGGACTTACCGGAGAAGGAGAAGAGGTGCAGAGTTGAGCTTGAATTGGTTGAGAGTAGGATCAGAGAGTTCAGGTCTGCTATGAACTGCTTGCTTGCTCATGTTGAAGGGAAAGAGTTGGAGGAGTATGGTGAAGAAGGCTTGAAGCTGTTTAAATTCGGCGAAATTCGGCCTTGGAGTCGAATTCAGAGGTTAATGGTGAGGGAGTGTCGCCGACTCGATGAGGGATTGCCCATTTATGCTCATAGGCAGCAAATTCTTGAGCAGATTACTAATCAGCAGGTCATGGTGTTGATTGGAGAGACTGGTTCAGGGAAGAGTACACAATTGGTTCAGTTTCTTGCTGATTCTGGAATCGCTGCTGATAAGTCCATTGTATGCACTCAGCCTCGCAAGATTGCTGCCAATTCATTGGCAAAGAGAGTCAAAGAAGAAAGTAGTGGGTGTTTCTATGGAGAAAGCACAGTTACCAGTTATCAGACATCGTCTGGACAGCAGTTGACTTCTAAGGTAACATATATGACAGACCACTGTTTACTGCAGTACTACATGAAAGATAGAAATATGACCATGATTTCTTGCATCATAGTTGATGAGGCTCATGAAAGGACCTTGAGTACAGATCTCCTTTTAGCATTGATCAAAGATTTACTGGGTCGAAGGCATCAGTTAAGGCTTATAATAATGTCTGCAACAGCTGATGCAGAAGTGCTTTCACATTATTTTTTCAACTGTAAAATCTTTCATGTAGTGGGGAGGAACTTTCCAGTTGATGTAAAATATGCTCCCTCTTTCACTGACGGAACTGCCAGTAATGTTGCTTCTTATGTTTCTGATGTGATGAGGGTAGCAAGAGAGATCCACAAGAATGAGAAACAAGGGACAATTCTTGCATTTTTGACTTCTCAGATGGAAGTCGAATGGGTCTGTGAGAAGTTTATAACACCTGGTACAATTGCATTGCCATTGCATGGGAAACTTTCTTTTGAAGAACAATCTAATGTTTTTCAAAATCACCCTGGAAAAAGAAAAATTATATTCGCCACAAATCTGGCGGAGACATCCCTGACAATTCCTGGGGTAAAGTATGTGATCGATTCTGGCATGGTCAAAGAAAGCAAATTTGAACCTGGAAGTGGTATGAATGTTCTCAGAGTTTGCAGGATCAGCCAGAGTTCTGCTAAGCAAAGAACTGGGCGTGCTGGAAGAACGGAACCTGGAATATGTTATAGACTCTACTCAGAATATGATTTTCAGGCGATGCCTCCATGTCAGGAGCCCGAGATCCGTAGAGTTCATCTTGGTGTAGCAGTTCTGAGGATTCTGGCTTTGGGTGTCAAGAATTTAAAAGAGTTTGAATTCATTGATGCACCTTGTTCTGAAGCTATAGACATGGCAATGAGGAATCTTGTTCAGTTAGGAGCTGTTAAGCAAAACAATGATGTCTATGAACTAACTCAAGAGGGTCGCGACTTGGTTAAATTGGGGGTTGAGCCTAGGCTTGGTAAATTAATTCTTGGCTGCTATCACCATAACTTGCGTAAGGAGGGCCTTGTTCTTGCGGCTGTAATGGCAAATGCAAGTAGCATATTTTGCAGAGTTGGTAATGACGAGGAGAAACTTAGGTCAGACTGCTTCAAGGTGCAATTTTGCCATCGTGATGGTGACCTCTTTACCCTTCTATCAGTGTACAAGATATGGGAAGCTCTGCCTCGAGAGAGGAGAAACACATGGTGTTGGGAAAACAGCATCAATGCCAAAACTATGAGGAGATGCCAGGACACTGTATTGGAATTGGAGTCTTGCCTTAAACATGAGCTCAATAGGATAATTCCTTGTAGCTGGCGTTGGAATGCGCATGTTTCAACTGATTGTGATATATACTTGAAAAAGGTTATACTTTCTTCCCTGGCAGAAAATGTAGCAATGTTCTCAGGATATGATCAAGTTGGTTATGAGGTGGCATTAACTGGGCAGCATGTTCGGCTGCACCCTTCTTGTTCATTACTGGTATTCGGCCAGAAACCTAGTTGGGTTGTTTTTGGTGAACTCCTCTCAAGTTCTAATCAGTATTTGGCCTGCGTCACTACCATTGATTTTAACTCTTTGTCTACCCTTGATCCCCCTCCTGTGTTTGATGTGTCCAAGATGGAAGGTCGAAAGTTGCAACTGAAAGTGTTGACTGGTTTTGGCAGTTGTTTGCTTAAAAGATTTTGTGGGAAGGGCAACAGTTATCTGCTTCATCTTGTATCTCGCGTCAGGACAATTTGCAATGACGAACTTATCAGCATTAAAGTCGATTATTATCAGAATGAGATTATGGTGTTTGCTACCCCACATAACATGGATAGGGTTATAAACCTTGTATCCGATGCATTGGAGTGTGAAAAAAGATGGCTGCGTAATGAATGCTTGGAGAAATGCTTGTATCATGGTTCTGGTGGCTTGCCTCCTGTAGCATTGTTTGGGGCTGGTGCAGAGATCAAGCATCTGGAGCTTCATAAAAGGTGTTTGACTGTTGATGTATTTCATTCAAAACTGGATGACATGGATGATAAGGAGTTTCTTACTGAGCTTGAAGAGTCTGCCTCTGGTAGTATCTGTGGTCATCATAAGTTCCCCGGCACTGGGCAGGAAAATGTTGACAAAGGAAAGGGGGCCAGGTTGACATTTTTTACTCCTGATGCTGCTCAGAAAGCTGTTGAATTAAATGATTCTGAGTTTAATGGTTCTATACTGAAGGTTGTTCCTTCACAGGTTGGAGGTGATCATAAGGTCTATCCACTCCTTGCTGTTAGAGCTAAAATTTTATGGCCTCGCAGGCAAAGCCACGGGTTTGCAATTGTTAAATGTGACATGGATGATATTTACCCCATGCTTGCTGATTTTTCTAACCTTGTAGTTTTAGGAAGAAATATTCGTTGTCAGCCTAGCAAAAGATACATGGACTCTGTTGTGATTAGTGGACTAAACAGAGATCTTTCTGAGAAAGAAATCCTTGATGTGTTAAGGACTGCTACTAGTAGGACAATCCTGGATTTTTTTCTGGTGAGAGGGGATGCTGTAGAAAATCCGCCATGTGGTGCATGTGAAGAAGCACTGCTAAAGGAAATATCACCCTATATGCCTAAACGGTACTCCCATAGTAGCTGCACTGTTCAGGTTTTCCAACCTGAACCAAAGAGTCATTTCATGAGAGCTTTGATAACATTTGACGGAAGATTACACTTGGAGGCAGCAAAGGCTTTAGAACAATTGGAAGGGAAAGTATTGCCCGGCTTCCTTCCATGGCAAAAGATGGAGTGTCAGCAGTTATTTCATAGCTCTCTGTCCTGCCCTGGCCCTGTTTATCGTGTAATAAAGAAGCAGCTAGATCCTTTACTTGAAAGTTTTACGCATCTAAAAGGTACTCCTCGTGATCTTGTTGCATTCTCTTTTCCAATTTATGAATTTTTTTTTCTAGATAATCATTTGTGGATTCTTCTGGTTCTGCTTTTCATTCTTTTGTATTTAATCAAGTCTTTTTCGCATGTTGTTGGGCTTTCGGGAATAGTTACATCTTTGGTTGTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C IBR OB_NTP_bind zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

1367

Amino Acids

155.36

Weight (kDa)

8.4

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	258 - 412	2.2e-10	DEAD/DEAH box helicase
AAA_19	PF13245	260 - 402	2.9e-06	AAA domain
AAA_22	PF13401	268 - 405	4e-06	AAA domain
Helicase_C	PF00271	460 - 580	9.3e-15	Helicase conserved C-terminal domain
OB_NTP_bind	PF07717	805 - 879	4.1e-10	Oligonucleotide/oligosaccharide-binding (OB)-fold
RBD_DEAH11	PF24475	981 - 1095	2.2e-48	DEAH11-like, RNA-binding domain
RRM_DEAH11	PF24637	1115 - 1195	1.3e-36	DEAH11 RRM domain
KH_DEAH11_1st	PF24638	1284 - 1313	1.3e-08	DEAH11 eukaryotic type KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01020 AT5G10370
fragaria_vesca	FvH4_1g20200
malus_domestica	MD01G1036600.v1.1 MD15G1318100.v1.1
prunus_persica	Prupe.6G193800_v2.0.a1
pyrus_communis	pycom01g06330 pycom01g06340 pycom01g06350 pycom15g28060
rosa_chinensis	RchiOBHm_Chr2g0112281
rosa_laevigata	RLG00000017968
rosa_multiflora	Rmu_co8243893.1_g000001 Rmu_sc0004467.1_g000026 Rmu_sc0011951.1_g000004
rosa_roxburghii	Rroxscaffold_2G00131560
rosa_rugosa	Rorug02G0179800
rosa_samantha	Rh2AG232200 Rh2BG245500 Rh2CG236400 Rh2DG239900
rosa_wichuraiana	Rw2G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1208, 1469, 2885
Acc16I	TGCGCA	1 cut(s)	2385
Acc36I	ACCTGC	1 cut(s)	799
AccB7I	CCANNNNNTGG	2 cut(s)	472, 1499
AccI	GTMKAC	1 cut(s)	2639
AccII	CGCG	8 cut(s)	72, 85, 239, 254, 269, 301, 1998, 2784
AccIII	TCCGGA	1 cut(s)	220
AclWI	GGATC	7 cut(s)	16, 596, 1381, 1700, 1807, 2642, 3896
AcoI	YGGCCR	8 cut(s)	18, 89, 110, 158, 409, 474, 504, 2545
AcuI	CTGAAG	2 cut(s)	1929, 3287
AcyI	GRCGYC	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	2262
AfaI	GTAC	9 cut(s)	263, 485, 850, 1073, 1147, 1480, 2219, 3665, 3937
AhlI	ACTAGT	1 cut(s)	3548
Alw21I	GWGCWC	1 cut(s)	2349
Alw26I	GTCTC	3 cut(s)	358, 824, 1580
AlwI	GGATC	7 cut(s)	16, 596, 1381, 1700, 1807, 2642, 3896
Ama87I	CYCGRG	2 cut(s)	1808, 2241
Aor13HI	TCCGGA	1 cut(s)	220
ArsI	GACNNNNNNTTYG	2 cut(s)	267, 299
AseI	ATTAAT	1 cut(s)	2039
AspA2I	CCTAGG	1 cut(s)	2024
AspLEI	GCGC	5 cut(s)	74, 256, 271, 465, 2386
AspS9I	GGNCC	7 cut(s)	60, 148, 385, 1137, 2077, 3186, 3869
AsuC2I	CCSGG	4 cut(s)	212, 311, 3150, 3804
AvaI	CYCGRG	2 cut(s)	1808, 2241
AvaII	GGWCC	4 cut(s)	60, 148, 385, 1137
AvrII	CCTAGG	1 cut(s)	2024
BalI	TGGCCA	2 cut(s)	476, 506
BanII	GRGCYC	2 cut(s)	1809, 2349
BarI	GAAGNNNNNNTAC	2 cut(s)	1333, 1365
BauI	CACGAG	1 cut(s)	3942
Bbv12I	GWGCWC	1 cut(s)	2349
BccI	CCATC	7 cut(s)	274, 1432, 2183, 2190, 2671, 2916, 3820
BceAI	ACGGC	5 cut(s)	62, 76, 104, 346, 448
BcgI	CGANNNNNNTGC	4 cut(s)	2492, 2526, 2806, 2840
BciVI	GTATCC	1 cut(s)	2905
BclI	TGATCA	4 cut(s)	177, 1167, 2470, 3295
BcnI	CCSGG	4 cut(s)	212, 311, 3150, 3804
BcoDI	GTCTC	3 cut(s)	358, 824, 1580
BcuI	ACTAGT	1 cut(s)	3548
BfaI	CTAG	6 cut(s)	2025, 2556, 3459, 3549, 3899, 3989
BfmI	CTRYAG	4 cut(s)	1067, 1914, 2982, 3591
BfoI	RGCGCY	1 cut(s)	466
BfuAI	ACCTGC	1 cut(s)	799
BfuI	GTATCC	1 cut(s)	2905
BglI	GCCNNNNNGGC	1 cut(s)	3349
BglII	AGATCT	2 cut(s)	1150, 3505
BlnI	CCTAGG	1 cut(s)	2024
BlpI	GCTNAGC	1 cut(s)	1710
BmcAI	AGTACT	1 cut(s)	1073
Bme18I	GGWCC	4 cut(s)	60, 148, 385, 1137
BmeT110I	CYCGRG	2 cut(s)	1808, 2241
BmgT120I	GGNCC	7 cut(s)	60, 148, 385, 1137, 2077, 3186, 3869
BmiI	GGNNCC	6 cut(s)	61, 62, 149, 1743, 1806, 3187
BmrI	ACTGGG	4 cut(s)	1190, 1731, 2508, 3165
BmuI	ACTGGG	4 cut(s)	1190, 1731, 2508, 3165
BplI	GAGNNNNNCTC	2 cut(s)	3101, 3133
BpmI	CTGGAG	2 cut(s)	401, 3041
Bpu1102I	GCTNAGC	1 cut(s)	1710
BpuEI	CTTGAG	4 cut(s)	809, 1162, 1971, 2569
BpuMI	CCSGG	4 cut(s)	212, 311, 3150, 3804
Bsa29I	ATCGAT	1 cut(s)	1623
BsaBI	GATNNNNATC	1 cut(s)	2832
BsaHI	GRCGYC	1 cut(s)	339
BsaWI	WCCGGW	2 cut(s)	220, 538
BsaXI	ACNNNNNCTCC	6 cut(s)	135, 165, 338, 368, 539, 569
Bse118I	RCCGGY	2 cut(s)	16, 407
Bse3DI	GCAATG	5 cut(s)	1487, 1493, 1932, 2460, 2806
Bse8I	GATNNNNATC	1 cut(s)	2832
BseAI	TCCGGA	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	1623
BseGI	GGATG	5 cut(s)	1589, 3076, 3085, 3394, 3592
BseJI	GATNNNNATC	1 cut(s)	2832
BseMI	GCAATG	5 cut(s)	1487, 1493, 1932, 2460, 2806
BseRI	GAGGAG	6 cut(s)	665, 2156, 2263, 2311, 2570, 3930
BseX3I	CGGCCG	5 cut(s)	18, 89, 110, 158, 409
BsgI	GTGCAG	5 cut(s)	208, 577, 2501, 3024, 3664
Bsh1236I	CGCG	8 cut(s)	72, 85, 239, 254, 269, 301, 1998, 2784
Bsh1285I	CGRYCG	7 cut(s)	21, 92, 113, 161, 310, 412, 490
BshVI	ATCGAT	1 cut(s)	1623
BsiEI	CGRYCG	7 cut(s)	21, 92, 113, 161, 310, 412, 490
BsiHKAI	GWGCWC	1 cut(s)	2349
BsiHKCI	CYCGRG	2 cut(s)	1808, 2241
BslFI	GGGAC	3 cut(s)	46, 161, 1423
BsmAI	GTCTC	3 cut(s)	358, 824, 1580
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	3 cut(s)	46, 161, 1423
BsmI	GAATGC	3 cut(s)	2386, 2942, 3956
BsoBI	CYCGRG	2 cut(s)	1808, 2241
Bsp1286I	GDGCHC	2 cut(s)	1809, 2349
Bsp13I	TCCGGA	1 cut(s)	220
Bsp1407I	TGTACA	1 cut(s)	2217
Bsp1720I	GCTNAGC	1 cut(s)	1710
Bsp19I	CCATGG	1 cut(s)	3815
Bsp68I	TCGCGA	1 cut(s)	1998
BspDI	ATCGAT	1 cut(s)	1623
BspEI	TCCGGA	1 cut(s)	220
BspFNI	CGCG	8 cut(s)	72, 85, 239, 254, 269, 301, 1998, 2784
BspHI	TCATGA	2 cut(s)	1129, 3720
BspLI	GGNNCC	6 cut(s)	61, 62, 149, 1743, 1806, 3187
BspMAI	CTGCAG	1 cut(s)	1071
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	7 cut(s)	16, 596, 1381, 1700, 1807, 2642, 3896
BsrDI	GCAATG	5 cut(s)	1487, 1493, 1932, 2460, 2806
BsrFI	RCCGGY	2 cut(s)	16, 407
BsrGI	TGTACA	1 cut(s)	2217
BssAI	RCCGGY	2 cut(s)	16, 407
BssNI	GRCGYC	1 cut(s)	339
BssSI	CACGAG	1 cut(s)	3942
BssT1I	CCWWGG	3 cut(s)	701, 2024, 3815
Bst2BI	CACGAG	1 cut(s)	3942
Bst4CI	ACNGT	9 cut(s)	235, 994, 1061, 1262, 2314, 2759, 3046, 3663, 3685
Bst6I	CTCTTC	3 cut(s)	545, 839, 3102
BstACI	GRCGYC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	2121
BstAUI	TGTACA	1 cut(s)	2217
BstDSI	CCRYGG	2 cut(s)	3358, 3815
BstEII	GGTNACC	1 cut(s)	2192
BstF5I	GGATG	5 cut(s)	1589, 3076, 3085, 3394, 3592
BstFNI	CGCG	8 cut(s)	72, 85, 239, 254, 269, 301, 1998, 2784
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	5 cut(s)	74, 256, 271, 465, 2386
BstMAI	GTCTC	3 cut(s)	358, 824, 1580
BstMCI	CGRYCG	7 cut(s)	21, 92, 113, 161, 310, 412, 490
BstNSI	RCATGY	4 cut(s)	2390, 2510, 3618, 4061
BstPI	GGTNACC	1 cut(s)	2192
BstSFI	CTRYAG	4 cut(s)	1067, 1914, 2982, 3591
BstUI	CGCG	8 cut(s)	72, 85, 239, 254, 269, 301, 1998, 2784
BstX2I	RGATCY	5 cut(s)	1150, 1386, 1812, 3505, 3901
BstXI	CCANNNNNNTGG	3 cut(s)	940, 1579, 2189
BstYI	RGATCY	5 cut(s)	1150, 1386, 1812, 3505, 3901
BstZI	CGGCCG	5 cut(s)	18, 89, 110, 158, 409
Bsu15I	ATCGAT	1 cut(s)	1623
BsuI	GTATCC	1 cut(s)	2905
BsuTUI	ATCGAT	1 cut(s)	1623
BtgI	CCRYGG	2 cut(s)	3358, 3815
BtgZI	GCGATG	2 cut(s)	293, 1802
BtsCI	GGATG	5 cut(s)	1589, 3076, 3085, 3394, 3592
BtsI	GCAGTG	2 cut(s)	263, 3626
BtsIMutI	CAGTG	9 cut(s)	191, 263, 1057, 1323, 2220, 2310, 3153, 3626, 3681
BtuMI	TCGCGA	1 cut(s)	1998
BveI	ACCTGC	1 cut(s)	799
CciI	TCATGA	2 cut(s)	1129, 3720
CfoI	GCGC	5 cut(s)	74, 256, 271, 465, 2386
Cfr10I	RCCGGY	2 cut(s)	16, 407
Cfr13I	GGNCC	7 cut(s)	60, 148, 385, 1137, 2077, 3186, 3869
ClaI	ATCGAT	1 cut(s)	1623
CseI	GACGC	5 cut(s)	228, 275, 347, 2599, 2773
CsiI	ACCWGGT	1 cut(s)	1474
Csp6I	GTAC	9 cut(s)	262, 484, 849, 1072, 1146, 1479, 2218, 3664, 3936
CviQI	GTAC	9 cut(s)	262, 484, 849, 1072, 1146, 1479, 2218, 3664, 3936
DraI	TTTAAA	2 cut(s)	682, 1875
DraIII	CACNNNGTG	1 cut(s)	2262
EaeI	YGGCCR	8 cut(s)	18, 89, 110, 158, 409, 474, 504, 2545
EagI	CGGCCG	5 cut(s)	18, 89, 110, 158, 409
Eam1104I	CTCTTC	3 cut(s)	545, 839, 3102
EarI	CTCTTC	3 cut(s)	545, 839, 3102
EciI	GGCGGA	2 cut(s)	1598, 3591
Ecl136II	GAGCTC	1 cut(s)	2347
EclXI	CGGCCG	5 cut(s)	18, 89, 110, 158, 409
Eco130I	CCWWGG	3 cut(s)	701, 2024, 3815
Eco147I	AGGCCT	1 cut(s)	514
Eco24I	GRGCYC	2 cut(s)	1809, 2349
Eco47I	GGWCC	4 cut(s)	60, 148, 385, 1137
Eco52I	CGGCCG	5 cut(s)	18, 89, 110, 158, 409
Eco53kI	GAGCTC	1 cut(s)	2347
Eco57I	CTGAAG	2 cut(s)	1929, 3287
Eco88I	CYCGRG	2 cut(s)	1808, 2241
Eco91I	GGTNACC	1 cut(s)	2192
EcoICRI	GAGCTC	1 cut(s)	2347
EcoO109I	RGGNCCY	4 cut(s)	60, 148, 1137, 2077
EcoO65I	GGTNACC	1 cut(s)	2192
EcoRI	GAATTC	3 cut(s)	102, 711, 1886
EcoT14I	CCWWGG	3 cut(s)	701, 2024, 3815
EcoT22I	ATGCAT	1 cut(s)	2905
EcoT38I	GRGCYC	2 cut(s)	1809, 2349
ErhI	CCWWGG	3 cut(s)	701, 2024, 3815
Esp3I	CGTCTC	1 cut(s)	358
FalI	AAGNNNNNCTT	2 cut(s)	3510, 3542
FaqI	GGGAC	3 cut(s)	46, 161, 1423
FbaI	TGATCA	4 cut(s)	177, 1167, 2470, 3295
FblI	GTMKAC	1 cut(s)	2639
FokI	GGATG	5 cut(s)	1576, 3083, 3092, 3401, 3599
FriOI	GRGCYC	2 cut(s)	1809, 2349
FspAI	RTGCGCAY	1 cut(s)	2385
FspBI	CTAG	6 cut(s)	2025, 2556, 3459, 3549, 3899, 3989
FspI	TGCGCA	1 cut(s)	2385
GlaI	GCGC	5 cut(s)	73, 255, 270, 464, 2385
GsuI	CTGGAG	2 cut(s)	401, 3041
HaeII	RGCGCY	1 cut(s)	466
HgaI	GACGC	5 cut(s)	228, 275, 347, 2599, 2773
HhaI	GCGC	5 cut(s)	74, 256, 271, 465, 2386
Hin1I	GRCGYC	1 cut(s)	339
Hin6I	GCGC	5 cut(s)	72, 254, 269, 463, 2384
HinP1I	GCGC	5 cut(s)	72, 254, 269, 463, 2384
HincII	GTYRAC	4 cut(s)	1029, 2709, 3172, 3195
HindII	GTYRAC	4 cut(s)	1029, 2709, 3172, 3195
HindIII	AAGCTT	1 cut(s)	332
Hpy99I	CGWCG	6 cut(s)	42, 90, 244, 269, 434, 440
HpyCH4III	ACNGT	9 cut(s)	235, 994, 1061, 1262, 2314, 2759, 3046, 3663, 3685
Hsp92I	GRCGYC	1 cut(s)	339
HspAI	GCGC	5 cut(s)	72, 254, 269, 463, 2384
KflI	GGGWCCC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	220
KroI	GCCGGC	2 cut(s)	16, 407
KroNI	GCCGGC	2 cut(s)	18, 409
Ksp22I	TGATCA	4 cut(s)	177, 1167, 2470, 3295
LmnI	GCTCC	5 cut(s)	376, 1318, 1804, 1949, 3022
MabI	ACCWGGT	1 cut(s)	1474
MaeI	CTAG	6 cut(s)	2025, 2556, 3459, 3549, 3899, 3989
MaeIII	GTNAC	6 cut(s)	994, 1039, 2192, 2611, 3380, 4081
MfeI	CAATTG	4 cut(s)	854, 1482, 3369, 3782
MflI	RGATCY	5 cut(s)	1150, 1386, 1812, 3505, 3901
MhlI	GDGCHC	2 cut(s)	1809, 2349
MlsI	TGGCCA	2 cut(s)	476, 506
MluNI	TGGCCA	2 cut(s)	476, 506
MmeI	TCCRAC	5 cut(s)	162, 627, 2357, 3268, 3721
Mox20I	TGGCCA	2 cut(s)	476, 506
Mph1103I	ATGCAT	1 cut(s)	2905
MroI	TCCGGA	1 cut(s)	220
MroNI	GCCGGC	2 cut(s)	16, 407
MscI	TGGCCA	2 cut(s)	476, 506
MslI	CAYNNNNRTG	5 cut(s)	1395, 1830, 1925, 2187, 2908
Msp20I	TGGCCA	2 cut(s)	476, 506
MspA1I	CMGCKG	2 cut(s)	109, 1226
MunI	CAATTG	4 cut(s)	854, 1482, 3369, 3782
Mva1269I	GAATGC	3 cut(s)	2386, 2942, 3956
MvnI	CGCG	8 cut(s)	72, 85, 239, 254, 269, 301, 1998, 2784
NaeI	GCCGGC	2 cut(s)	18, 409
NciI	CCSGG	4 cut(s)	212, 311, 3150, 3804
NcoI	CCATGG	1 cut(s)	3815
NgoMIV	GCCGGC	2 cut(s)	16, 407
NlaIV	GGNNCC	6 cut(s)	61, 62, 149, 1743, 1806, 3187
NmuCI	GTSAC	3 cut(s)	2192, 2611, 3380
NruI	TCGCGA	1 cut(s)	1998
NsbI	TGCGCA	1 cut(s)	2385
NsiI	ATGCAT	1 cut(s)	2905
NspI	RCATGY	4 cut(s)	2390, 2510, 3618, 4061
PaeR7I	CTCGAG	1 cut(s)	2241
PagI	TCATGA	2 cut(s)	1129, 3720
PceI	AGGCCT	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 435
PctI	GAATGC	3 cut(s)	2386, 2942, 3956
PdiI	GCCGGC	2 cut(s)	18, 409
PfeI	GAWTC	7 cut(s)	875, 882, 1625, 1849, 1933, 3242, 4006
PflFI	GACNNNGTC	2 cut(s)	350, 1012
PflMI	CCANNNNNTGG	2 cut(s)	472, 1499
PfoI	TCCNGGA	1 cut(s)	3561
PpuMI	RGGWCCY	3 cut(s)	60, 148, 1137
PshBI	ATTAAT	1 cut(s)	2039
PsiI	TTATAA	3 cut(s)	1208, 1469, 2885
Psp124BI	GAGCTC	1 cut(s)	2349
Psp5II	RGGWCCY	3 cut(s)	60, 148, 1137
PspEI	GGTNACC	1 cut(s)	2192
PspN4I	GGNNCC	6 cut(s)	61, 62, 149, 1743, 1806, 3187
PspPI	GGNCC	7 cut(s)	60, 148, 385, 1137, 2077, 3186, 3869
PspPPI	RGGWCCY	3 cut(s)	60, 148, 1137
PstI	CTGCAG	1 cut(s)	1071
PsuI	RGATCY	5 cut(s)	1150, 1386, 1812, 3505, 3901
PsyI	GACNNNGTC	2 cut(s)	350, 1012
PvuII	CAGCTG	1 cut(s)	1226
RruI	TCGCGA	1 cut(s)	1998
RsaI	GTAC	9 cut(s)	263, 485, 850, 1073, 1147, 1480, 2219, 3665, 3937
RsaNI	GTAC	9 cut(s)	262, 484, 849, 1072, 1146, 1479, 2218, 3664, 3936
RseI	CAYNNNNRTG	5 cut(s)	1395, 1830, 1925, 2187, 2908
SacI	GAGCTC	1 cut(s)	2349
Sau96I	GGNCC	7 cut(s)	60, 148, 385, 1137, 2077, 3186, 3869
ScaI	AGTACT	1 cut(s)	1073
SduI	GDGCHC	2 cut(s)	1809, 2349
SexAI	ACCWGGT	1 cut(s)	1474
SfcI	CTRYAG	4 cut(s)	1067, 1914, 2982, 3591
Sfr274I	CTCGAG	1 cut(s)	2241
SinI	GGWCC	4 cut(s)	60, 148, 385, 1137
SlaI	CTCGAG	1 cut(s)	2241
SmiMI	CAYNNNNRTG	5 cut(s)	1395, 1830, 1925, 2187, 2908
SmlI	CTYRAG	5 cut(s)	788, 1141, 1986, 2241, 2584
SmoI	CTYRAG	5 cut(s)	788, 1141, 1986, 2241, 2584
SpeI	ACTAGT	1 cut(s)	3548
SseBI	AGGCCT	1 cut(s)	514
SspI	AATATT	1 cut(s)	3445
SspMI	CTAG	6 cut(s)	2025, 2556, 3459, 3549, 3899, 3989
SstI	GAGCTC	1 cut(s)	2349
StuI	AGGCCT	1 cut(s)	514
StyI	CCWWGG	3 cut(s)	701, 2024, 3815
TaaI	ACNGT	9 cut(s)	235, 994, 1061, 1262, 2314, 2759, 3046, 3663, 3685
TaqII	GACCGA	1 cut(s)	504
TatI	WGTACW	4 cut(s)	848, 1071, 1145, 2217
TauI	GCSGC	5 cut(s)	77, 112, 160, 304, 2093
TfiI	GAWTC	7 cut(s)	875, 882, 1625, 1849, 1933, 3242, 4006
TscAI	CASTG	9 cut(s)	191, 263, 1064, 1330, 2220, 2317, 3160, 3633, 3688
TseFI	GTSAC	3 cut(s)	2192, 2611, 3380
Tsp45I	GTSAC	3 cut(s)	2192, 2611, 3380
TspGWI	ACGGA	5 cut(s)	340, 1344, 1754, 1805, 3759
TspRI	CASTG	9 cut(s)	191, 263, 1064, 1330, 2220, 2317, 3160, 3633, 3688
Tth111I	GACNNNGTC	2 cut(s)	350, 1012
Van91I	CCANNNNNTGG	2 cut(s)	472, 1499
VpaK11BI	GGWCC	4 cut(s)	60, 148, 385, 1137
VspI	ATTAAT	1 cut(s)	2039
XbaI	TCTAGA	1 cut(s)	3988
XceI	RCATGY	4 cut(s)	2390, 2510, 3618, 4061
XhoI	CTCGAG	1 cut(s)	2241
XmaJI	CCTAGG	1 cut(s)	2024
XmiI	GTMKAC	1 cut(s)	2639
XspI	CTAG	6 cut(s)	2025, 2556, 3459, 3549, 3899, 3989
ZrmI	AGTACT	1 cut(s)	1073
Zsp2I	ATGCAT	1 cut(s)	2905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.