Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009423

Physical Location & Seq

Genomic Coordinates Forward (+)

6578747 .. 6580588

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGACGGAGGGGCGGTGAAGAAGTGGGAAGCGAAGAGGGTCTGGTTGTGCAACGACAACGAGCGAGTTTCGAAGTTGCTTCGTGGGCATAACAATCTGCGGAGTTTCAGCGAGTTGAATGAGACGATGAAGAGGAACAGGAGTGAAATTCAATTGGTTGAGAGCCGGATTAGGGAGTTCAAGTCCGCCATGAATTGCTTGCTTGATTATCTTGAGGAGAAGGGGGCGGAGGAAACTGGTGAAGAAGGCGTGAAAGTGTTCAAATTTTCGAGTCAAGATTATGATTGGAGTCAAATTCAGAGCTTAATTGTTCGGGAATGCAGCAGGCTCGAAGAAGGGTTGCCCATTTATGCTTATCGGCAGAAAATTCTTCAGCAAATTCTTAGCCAGCAGGTCATGGTGTTGATTGGAGAGACTGGCTCAGGGAAGAGTACGCAGATGGTGCAGTATCTTGCTGATTCTGGAATTGCTGCTGAGCAATCCATTGTATGCACTCAGCCTCGTAAGATTGCTGCCATGTCGTTATCGCAAAGAGTTAGAGAAGAAAGTAGTGGGTGTTACGGAGGAAACTCAGTATCATGCAATTCAACATTTTTGTCAGGGCAGGGGTTGGTTTCTAAGGTTACATTTATGACAGATCACTGTTTACTGCAGCACTACATGAATGATACGAATATGTCAGGTATTTCTTGTATCATAGTTGATGAGGCTCATGAAAGGAGCTTGAATACTGATCTCCTGTTGGCATGTTTAAAAGATTTACTTGGTCGAAGGTCTAGTTTACGACTTATTATAATGTCAGCAACAGTTGATGCCAATGTGGTGTCCGACTATTTTTATGGTTGTGGAATATTTTCTGTAACGGGGAGGAGCTTTCCTGTTGATGTTAGATATGTACCGTGTTTCAGCGAAGGAACTTCTAGTGATGCTTCCTATGTTTCTGATGTGCTGAGGGTAGCAGCAGATGTACACAGGAAAGAGAAAGAGGGGACAATTCTCGCCTTTTTGACTTCCCAGTTGGAAGTAGAATGGTGCTGTGAGAAGTTTATAGCACCTGGTGCAATTGCATTGCCATTGCATGGAAAACTTTCTTTTGAAGACCAATTTAATGTTTTCAAAAACTACCCTGGAAAAAGGAAAATTATTTTCGCCACTAATCTGGCTGAGACATCACTGACAATTCCTGGGGTAAAGTATGTGATTGATTCTGGTATGGCTAAAGAAAGCAAATTTGAACCGGGAAGTGGCATGAATGTTCTCAGAGTTTGTATGATCAGCCAGAGTTCTGCTAATCAAAGAAGTGGCCGTGCTGGAAGAACTGAACCAGGAGTATGTTATAGACTTTACTCAGAATATGACTTTGAGGCTATGCCTCCTTGTCAGGAACCTGATCGATCCGCAGAGTTCATCTTGGTGTTGCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C IBR OB_NTP_bind zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

476

Amino Acids

53.07

Weight (kDa)

5.87

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01020 AT5G10370
fragaria_vesca	FvH4_1g20200
malus_domestica	MD01G1036600.v1.1 MD15G1318100.v1.1
prunus_persica	Prupe.6G193800_v2.0.a1
pyrus_communis	pycom01g06330 pycom01g06340 pycom01g06350 pycom15g28060
rosa_chinensis	RchiOBHm_Chr2g0112281
rosa_laevigata	RLG00000017968
rosa_multiflora	Rmu_co8243893.1_g000001 Rmu_sc0004467.1_g000026 Rmu_sc0011951.1_g000004
rosa_roxburghii	Rroxscaffold_2G00131560
rosa_rugosa	Rorug02G0179800
rosa_samantha	Rh2AG232200 Rh2BG245500 Rh2CG236400 Rh2DG239900
rosa_wichuraiana	Rw2G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	794
Acc36I	ACCTGC	1 cut(s)	382
AccB7I	CCANNNNNTGG	1 cut(s)	1079
AciI	CCGC	5 cut(s)	14, 100, 186, 227, 1398
AclWI	GGATC	1 cut(s)	1389
AcoI	YGGCCR	1 cut(s)	1303
AcsI	RAATTY	6 cut(s)	147, 263, 294, 366, 378, 1229
AcuI	CTGAAG	1 cut(s)	356
AdeI	CACNNNGTG	1 cut(s)	1058
AfaI	GTAC	3 cut(s)	433, 897, 969
AfiI	CCNNNNNNNGG	3 cut(s)	172, 1079, 1244
AgsI	TTSAA	9 cut(s)	118, 152, 181, 262, 588, 727, 1097, 1117, 1235
AjnI	CCWGG	4 cut(s)	1054, 1126, 1183, 1324
AluBI	AGCT	3 cut(s)	303, 723, 873
AluI	AGCT	3 cut(s)	303, 723, 873
Alw26I	GTCTC	3 cut(s)	116, 407, 1160
AlwI	GGATC	1 cut(s)	1389
AoxI	GGCC	1 cut(s)	1303
ApeKI	GCWGC	5 cut(s)	321, 470, 512, 652, 959
ApoI	RAATTY	6 cut(s)	147, 263, 294, 366, 378, 1229
Asp700I	GAANNNNTTC	3 cut(s)	257, 853, 1087
AsuC2I	CCSGG	1 cut(s)	1239
AsuHPI	GGTGA	2 cut(s)	28, 251
AsuII	TTCGAA	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	1104
BbvCI	CCTCAGC	1 cut(s)	950
BbvI	GCAGC	5 cut(s)	333, 457, 499, 664, 971
BccI	CCATC	1 cut(s)	433
BceAI	ACGGC	1 cut(s)	1290
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	4 cut(s)	1056, 1128, 1185, 1326
BclI	TGATCA	1 cut(s)	1272
BcnI	CCSGG	1 cut(s)	1239
BcoDI	GTCTC	3 cut(s)	116, 407, 1160
BfaI	CTAG	2 cut(s)	777, 921
BfmI	CTRYAG	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	5 cut(s)	322, 471, 513, 653, 960
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	5 cut(s)	323, 472, 514, 654, 961
Bme1390I	CCNGG	5 cut(s)	1056, 1128, 1185, 1239, 1326
BmiI	GGNNCC	1 cut(s)	1386
BmrFI	CCNGG	5 cut(s)	1056, 1128, 1185, 1239, 1326
BmrI	ACTGGG	1 cut(s)	1009
BmsI	GCATC	2 cut(s)	802, 916
BmuI	ACTGGG	1 cut(s)	1009
BpiI	GAAGAC	1 cut(s)	1104
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
Bpu10I	CCTNAGC	2 cut(s)	421, 950
Bpu1102I	GCTNAGC	1 cut(s)	474
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	1239
Bsa29I	ATCGAT	1 cut(s)	1393
BsaJI	CCNNGG	2 cut(s)	1126, 1184
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 1079, 1244
Bse1I	ACTGG	3 cut(s)	241, 421, 1015
Bse3DI	GCAATG	2 cut(s)	1067, 1073
BseBI	CCWGG	4 cut(s)	1056, 1128, 1185, 1326
BseCI	ATCGAT	1 cut(s)	1393
BseDI	CCNNGG	2 cut(s)	1126, 1184
BseLI	CCNNNNNNNGG	3 cut(s)	172, 1079, 1244
BseMI	GCAATG	2 cut(s)	1067, 1073
BseMII	CTCAG	8 cut(s)	435, 465, 509, 585, 941, 1155, 1273, 1362
BseNI	ACTGG	3 cut(s)	241, 421, 1015
BseRI	GAGGAG	2 cut(s)	230, 883
BseXI	GCAGC	5 cut(s)	333, 457, 499, 664, 971
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	1305
BshVI	ATCGAT	1 cut(s)	1393
BsiSI	CCGG	2 cut(s)	166, 1238
BslFI	GGGAC	1 cut(s)	1003
BslI	CCNNNNNNNGG	3 cut(s)	172, 1079, 1244
BsmAI	GTCTC	3 cut(s)	116, 407, 1160
BsmBI	CGTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	1003
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	1305
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1407I	TGTACA	1 cut(s)	967
Bsp143I	GATC	5 cut(s)	637, 733, 1272, 1390, 1394
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	5 cut(s)	14, 100, 186, 227, 1398
BspANI	GGCC	1 cut(s)	1305
BspCNI	CTCAG	8 cut(s)	434, 466, 508, 584, 942, 1156, 1272, 1361
BspDI	ATCGAT	1 cut(s)	1393
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	1386
BspMAI	CTGCAG	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	1 cut(s)	1389
BspT104I	TTCGAA	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	1067, 1073
BsrGI	TGTACA	1 cut(s)	967
BsrI	ACTGG	3 cut(s)	241, 421, 1015
BssECI	CCNNGG	2 cut(s)	1126, 1184
BssMI	GATC	5 cut(s)	637, 733, 1272, 1390, 1394
Bst2UI	CCWGG	4 cut(s)	1056, 1128, 1185, 1326
Bst4CI	ACNGT	3 cut(s)	644, 808, 900
Bst6I	CTCTTC	3 cut(s)	29, 125, 422
BstAPI	GCANNNNNTGC	2 cut(s)	442, 1058
BstAUI	TGTACA	1 cut(s)	967
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	200, 326, 389
BstKTI	GATC	5 cut(s)	640, 736, 1275, 1393, 1397
BstMAI	GTCTC	3 cut(s)	116, 407, 1160
BstMBI	GATC	5 cut(s)	637, 733, 1272, 1390, 1394
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 442, 1058
BstNI	CCWGG	4 cut(s)	1056, 1128, 1185, 1326
BstNSI	RCATGY	1 cut(s)	750
BstSCI	CCNGG	5 cut(s)	1054, 1126, 1183, 1237, 1324
BstSFI	CTRYAG	1 cut(s)	650
BstV1I	GCAGC	5 cut(s)	333, 457, 499, 664, 971
BstV2I	GAAGAC	1 cut(s)	1104
BstXI	CCANNNNNNTGG	1 cut(s)	1159
Bsu15I	ATCGAT	1 cut(s)	1393
BsuRI	GGCC	1 cut(s)	1305
BsuTUI	ATCGAT	1 cut(s)	1393
BtsIMutI	CAGTG	2 cut(s)	640, 1172
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	3 cut(s)	200, 326, 389
CciI	TCATGA	1 cut(s)	712
ClaI	ATCGAT	1 cut(s)	1393
CsiI	ACCWGGT	1 cut(s)	1054
Csp6I	GTAC	3 cut(s)	432, 896, 968
CviAII	CATG	9 cut(s)	190, 397, 517, 579, 661, 713, 747, 1079, 1249
CviQI	GTAC	3 cut(s)	432, 896, 968
DpnI	GATC	5 cut(s)	639, 735, 1274, 1392, 1396
DpnII	GATC	5 cut(s)	637, 733, 1272, 1390, 1394
DraI	TTTAAA	1 cut(s)	753
DraIII	CACNNNGTG	1 cut(s)	1058
EaeI	YGGCCR	1 cut(s)	1303
Eam1104I	CTCTTC	3 cut(s)	29, 125, 422
EarI	CTCTTC	3 cut(s)	29, 125, 422
EciI	GGCGGA	2 cut(s)	175, 242
Eco57I	CTGAAG	1 cut(s)	356
EcoRII	CCWGG	4 cut(s)	1054, 1126, 1183, 1324
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	9 cut(s)	193, 400, 520, 582, 664, 716, 750, 1082, 1252
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	1 cut(s)	1003
FatI	CATG	9 cut(s)	189, 396, 516, 578, 660, 712, 746, 1078, 1248
FbaI	TGATCA	1 cut(s)	1272
Fnu4HI	GCNGC	5 cut(s)	322, 471, 513, 653, 960
Fsp4HI	GCNGC	5 cut(s)	322, 471, 513, 653, 960
FspBI	CTAG	2 cut(s)	777, 921
GluI	GCNGC	5 cut(s)	322, 471, 513, 653, 960
HaeIII	GGCC	1 cut(s)	1305
HapII	CCGG	2 cut(s)	166, 1238
Hin1II	CATG	9 cut(s)	193, 400, 520, 582, 664, 716, 750, 1082, 1252
HinfI	GANTC	4 cut(s)	271, 289, 458, 1205
HpaII	CCGG	2 cut(s)	166, 1238
HphI	GGTGA	2 cut(s)	28, 251
Hpy166II	GTNNAC	3 cut(s)	647, 782, 970
Hpy188I	TCNGA	6 cut(s)	300, 829, 943, 1262, 1351, 1427
Hpy188III	TCNNGA	6 cut(s)	212, 275, 314, 462, 713, 1382
Hpy8I	GTNNAC	3 cut(s)	647, 782, 970
HpyAV	CCTTC	5 cut(s)	214, 239, 329, 765, 905
HpyCH4III	ACNGT	3 cut(s)	644, 808, 900
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 442, 1058
Hsp92II	CATG	9 cut(s)	193, 400, 520, 582, 664, 716, 750, 1082, 1252
Ksp22I	TGATCA	1 cut(s)	1272
Kzo9I	GATC	5 cut(s)	637, 733, 1272, 1390, 1394
LmnI	GCTCC	2 cut(s)	720, 870
Lsp1109I	GCAGC	5 cut(s)	333, 457, 499, 664, 971
LweI	GCATC	2 cut(s)	802, 916
MabI	ACCWGGT	1 cut(s)	1054
MaeI	CTAG	2 cut(s)	777, 921
MaeIII	GTNAC	3 cut(s)	557, 622, 859
MalI	GATC	5 cut(s)	639, 735, 1274, 1392, 1396
MboI	GATC	5 cut(s)	637, 733, 1272, 1390, 1394
MfeI	CAATTG	2 cut(s)	152, 1062
MlyI	GAGTC	2 cut(s)	280, 298
MmeI	TCCRAC	2 cut(s)	852, 999
MroXI	GAANNNNTTC	3 cut(s)	257, 853, 1087
MseI	TTAA	3 cut(s)	305, 752, 1107
MslI	CAYNNNNRTG	1 cut(s)	1412
MspI	CCGG	2 cut(s)	166, 1238
MspR9I	CCNGG	5 cut(s)	1056, 1128, 1185, 1239, 1326
MunI	CAATTG	2 cut(s)	152, 1062
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	4 cut(s)	1056, 1128, 1185, 1326
MwoI	GCNNNNNNNGC	3 cut(s)	85, 442, 1058
NciI	CCSGG	1 cut(s)	1239
NdeII	GATC	5 cut(s)	637, 733, 1272, 1390, 1394
NlaIII	CATG	9 cut(s)	193, 400, 520, 582, 664, 716, 750, 1082, 1252
NlaIV	GGNNCC	1 cut(s)	1386
NspI	RCATGY	1 cut(s)	750
NspV	TTCGAA	1 cut(s)	71
PagI	TCATGA	1 cut(s)	712
PctI	GAATGC	1 cut(s)	323
PdmI	GAANNNNTTC	3 cut(s)	257, 853, 1087
PfeI	GAWTC	2 cut(s)	458, 1205
PflMI	CCANNNNNTGG	1 cut(s)	1079
PkrI	GCNGC	5 cut(s)	323, 472, 514, 654, 961
PleI	GAGTC	2 cut(s)	279, 297
PpsI	GAGTC	2 cut(s)	279, 297
PsiI	TTATAA	1 cut(s)	794
Psp6I	CCWGG	4 cut(s)	1054, 1126, 1183, 1324
PspGI	CCWGG	4 cut(s)	1054, 1126, 1183, 1324
PspN4I	GGNNCC	1 cut(s)	1386
PstI	CTGCAG	1 cut(s)	654
RsaI	GTAC	3 cut(s)	433, 897, 969
RsaNI	GTAC	3 cut(s)	432, 896, 968
RseI	CAYNNNNRTG	1 cut(s)	1412
SaqAI	TTAA	3 cut(s)	305, 752, 1107
SatI	GCNGC	5 cut(s)	322, 471, 513, 653, 960
Sau3AI	GATC	5 cut(s)	637, 733, 1272, 1390, 1394
SchI	GAGTC	2 cut(s)	280, 298
ScrFI	CCNGG	5 cut(s)	1056, 1128, 1185, 1239, 1326
SetI	ASST	9 cut(s)	305, 396, 624, 685, 725, 776, 875, 1057, 1390
SexAI	ACCWGGT	1 cut(s)	1054
SfaNI	GCATC	2 cut(s)	802, 916
SfcI	CTRYAG	1 cut(s)	650
SfuI	TTCGAA	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	1412
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SsiI	CCGC	5 cut(s)	14, 100, 186, 227, 1398
SspI	AATATT	1 cut(s)	852
SspMI	CTAG	2 cut(s)	777, 921
StyD4I	CCNGG	5 cut(s)	1054, 1126, 1183, 1237, 1324
TaaI	ACNGT	3 cut(s)	644, 808, 900
TaqI	TCGA	5 cut(s)	71, 269, 330, 769, 1393
TatI	WGTACW	1 cut(s)	967
TfiI	GAWTC	2 cut(s)	458, 1205
Tru1I	TTAA	3 cut(s)	305, 752, 1107
Tru9I	TTAA	3 cut(s)	305, 752, 1107
TscAI	CASTG	2 cut(s)	647, 1179
TseI	GCWGC	5 cut(s)	321, 470, 512, 652, 959
TspDTI	ATGAA	6 cut(s)	143, 206, 677, 729, 1265, 1396
TspGWI	ACGGA	2 cut(s)	21, 576
TspRI	CASTG	2 cut(s)	647, 1179
Van91I	CCANNNNNTGG	1 cut(s)	1079
XapI	RAATTY	6 cut(s)	147, 263, 294, 366, 378, 1229
XceI	RCATGY	1 cut(s)	750
XmnI	GAANNNNTTC	3 cut(s)	257, 853, 1087
XspI	CTAG	2 cut(s)	777, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.