Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8243893.1

Orthogroup ID

OG0009423

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 734

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8243893.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 733 bp

atgaggggatcaaagccggccggaatgtcgtggccgcaggctgagcagcgacgattttatccgcaaccagggtcccacccacgcgccgccgtcccgcgacggccggtgcctcgaattcagcggccgaatttcatcgtttatcttctgtccgacaaacgggaccaccgggggtcggacatcgaggcggtgatcaaccagtgcagggcgaagccggagaatttccgggtgagtccggagaacaacacagtcgcgtcgatgttctacgcgcagtggtacgacgcgctcgaagcgatggtctggctgtgggagtcgcggctcgaccgggttcacaatttcacgcccaagcttgacgccaacgactccgtctccacgccgtccgatagcgtggagctggaggaccgcctgagagccttgttcgccggccgaattaagcagttaatcgacggcgacgaggtgaagaagtgtgaagcaaagcgccaaattttggccagagagtacgaccgagttcgtaagctggccaagaagcctcagaggaattgggaggacttaccggagaaggagaagaggtgcagagttgagcttgaattggttgagagtaggatcagagagttcaggtctgctatgaactgcttgcttgctcgtgttgaagggaaagagttggaggagtatggtgaagaaggcgtgaagctgtttaaattcggcgaaatttggcattggagtcgaattcagaggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C IBR OB_NTP_bind zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

244

Amino Acids

28.79

Weight (kDa)

9.37

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01020 AT5G10370
fragaria_vesca	FvH4_1g20200
malus_domestica	MD01G1036600.v1.1 MD15G1318100.v1.1
prunus_persica	Prupe.6G193800_v2.0.a1
pyrus_communis	pycom01g06330 pycom01g06340 pycom01g06350 pycom15g28060
rosa_chinensis	RchiOBHm_Chr2g0112281
rosa_laevigata	RLG00000017968
rosa_multiflora	Rmu_co8243893.1_g000001 Rmu_sc0004467.1_g000026 Rmu_sc0011951.1_g000004
rosa_roxburghii	Rroxscaffold_2G00131560
rosa_rugosa	Rorug02G0179800
rosa_samantha	Rh2AG232200 Rh2BG245500 Rh2CG236400 Rh2DG239900
rosa_wichuraiana	Rw2G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccII	CGCG	6 cut(s)	84, 97, 251, 266, 281, 313
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	8 cut(s)	35, 62, 87, 95, 121, 185, 313, 400
AclWI	GGATC	2 cut(s)	16, 608
AcoI	YGGCCR	7 cut(s)	18, 32, 101, 122, 421, 486, 516
AcsI	RAATTY	7 cut(s)	114, 127, 217, 480, 695, 705, 723
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	2 cut(s)	275, 497
AfiI	CCNNNNNNNGG	5 cut(s)	68, 156, 172, 202, 484
AgsI	TTSAA	2 cut(s)	584, 647
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	5 cut(s)	346, 391, 514, 580, 688
AluI	AGCT	5 cut(s)	346, 391, 514, 580, 688
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	2 cut(s)	16, 608
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	7 cut(s)	18, 32, 101, 122, 421, 486, 516
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	7 cut(s)	114, 127, 217, 480, 695, 705, 723
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspLEI	GCGC	4 cut(s)	86, 268, 283, 477
AspS9I	GGNCC	3 cut(s)	72, 160, 397
AsuC2I	CCSGG	3 cut(s)	167, 224, 323
AsuHPI	GGTGA	4 cut(s)	199, 238, 466, 683
AvaII	GGWCC	3 cut(s)	72, 160, 397
BalI	TGGCCA	2 cut(s)	488, 518
BanI	GGYRCC	1 cut(s)	106
BauI	CACGAG	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	4 cut(s)	74, 116, 358, 460
BcgI	CGANNNNNNTGC	1 cut(s)	701
BciT130I	CCWGG	1 cut(s)	69
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	3 cut(s)	167, 224, 323
BcoDI	GTCTC	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	478
BisI	GCNGC	5 cut(s)	35, 47, 87, 122, 314
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	5 cut(s)	36, 48, 88, 123, 315
Bme1390I	CCNGG	4 cut(s)	69, 167, 224, 323
Bme18I	GGWCC	3 cut(s)	72, 160, 397
BmgT120I	GGNCC	3 cut(s)	72, 160, 397
BmiI	GGNNCC	4 cut(s)	73, 74, 108, 161
BmrFI	CCNGG	4 cut(s)	69, 167, 224, 323
BpmI	CTGGAG	1 cut(s)	413
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuMI	CCSGG	3 cut(s)	167, 224, 323
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	68, 166
BsaWI	WCCGGW	2 cut(s)	232, 550
BsaXI	ACNNNNNCTCC	4 cut(s)	350, 380, 551, 581
Bsc4I	CCNNNNNNNGG	5 cut(s)	68, 156, 172, 202, 484
Bse118I	RCCGGY	3 cut(s)	16, 103, 419
Bse1I	ACTGG	1 cut(s)	196
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	68, 166
BseLI	CCNNNNNNNGG	5 cut(s)	68, 156, 172, 202, 484
BseMII	CTCAG	3 cut(s)	33, 395, 542
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	677
BseX3I	CGGCCG	4 cut(s)	18, 101, 122, 421
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	2 cut(s)	220, 589
Bsh1236I	CGCG	6 cut(s)	84, 97, 251, 266, 281, 313
Bsh1285I	CGRYCG	6 cut(s)	21, 104, 125, 322, 424, 502
BshFI	GGCC	7 cut(s)	20, 34, 103, 124, 423, 488, 518
BshNI	GGYRCC	1 cut(s)	106
BsiEI	CGRYCG	6 cut(s)	21, 104, 125, 322, 424, 502
BslFI	GGGAC	3 cut(s)	58, 77, 173
BslI	CCNNNNNNNGG	5 cut(s)	68, 156, 172, 202, 484
BsmAI	GTCTC	1 cut(s)	370
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	3 cut(s)	58, 77, 173
BsnI	GGCC	7 cut(s)	20, 34, 103, 124, 423, 488, 518
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	8, 189, 600
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	8 cut(s)	35, 62, 87, 95, 121, 185, 313, 400
BspANI	GGCC	7 cut(s)	20, 34, 103, 124, 423, 488, 518
BspCNI	CTCAG	3 cut(s)	34, 396, 541
BspEI	TCCGGA	1 cut(s)	232
BspFNI	CGCG	6 cut(s)	84, 97, 251, 266, 281, 313
BspLI	GGNNCC	4 cut(s)	73, 74, 108, 161
BspPI	GGATC	2 cut(s)	16, 608
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	3 cut(s)	16, 103, 419
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	3 cut(s)	16, 103, 419
BssECI	CCNNGG	2 cut(s)	68, 166
BssMI	GATC	3 cut(s)	8, 189, 600
BssNI	GRCGYC	1 cut(s)	351
BssSI	CACGAG	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	557
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	6 cut(s)	18, 39, 421, 516, 632, 636
BstDEI	CTNAG	3 cut(s)	42, 404, 528
BstFNI	CGCG	6 cut(s)	84, 97, 251, 266, 281, 313
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	4 cut(s)	86, 268, 283, 477
BstKTI	GATC	3 cut(s)	11, 192, 603
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	8, 189, 600
BstMCI	CGRYCG	6 cut(s)	21, 104, 125, 322, 424, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 287, 416
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	4 cut(s)	67, 165, 222, 321
BstUI	CGCG	6 cut(s)	84, 97, 251, 266, 281, 313
BstV1I	GCAGC	1 cut(s)	58
BstZI	CGGCCG	4 cut(s)	18, 101, 122, 421
BsuRI	GGCC	7 cut(s)	20, 34, 103, 124, 423, 488, 518
BtgZI	GCGATG	1 cut(s)	305
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	203, 275
Cac8I	GCNNGC	6 cut(s)	18, 39, 421, 516, 632, 636
CfoI	GCGC	4 cut(s)	86, 268, 283, 477
Cfr10I	RCCGGY	3 cut(s)	16, 103, 419
Cfr13I	GGNCC	3 cut(s)	72, 160, 397
CseI	GACGC	3 cut(s)	240, 287, 359
Csp6I	GTAC	2 cut(s)	274, 496
CviQI	GTAC	2 cut(s)	274, 496
DdeI	CTNAG	3 cut(s)	42, 404, 528
DpnI	GATC	3 cut(s)	10, 191, 602
DpnII	GATC	3 cut(s)	8, 189, 600
DraI	TTTAAA	1 cut(s)	694
EaeI	YGGCCR	7 cut(s)	18, 32, 101, 122, 421, 486, 516
EagI	CGGCCG	4 cut(s)	18, 101, 122, 421
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
EclXI	CGGCCG	4 cut(s)	18, 101, 122, 421
Eco47I	GGWCC	3 cut(s)	72, 160, 397
Eco52I	CGGCCG	4 cut(s)	18, 101, 122, 421
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRI	GAATTC	2 cut(s)	114, 723
EcoRII	CCWGG	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	370
FaiI	YATR	2 cut(s)	623, 669
FaqI	GGGAC	3 cut(s)	58, 77, 173
FauI	CCCGC	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	35, 47, 87, 122, 314
Fsp4HI	GCNGC	5 cut(s)	35, 47, 87, 122, 314
GlaI	GCGC	4 cut(s)	85, 267, 282, 476
GluI	GCNGC	5 cut(s)	35, 47, 87, 122, 314
GsuI	CTGGAG	1 cut(s)	413
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	7 cut(s)	20, 34, 103, 124, 423, 488, 518
HgaI	GACGC	3 cut(s)	240, 287, 359
HhaI	GCGC	4 cut(s)	86, 268, 283, 477
Hin1I	GRCGYC	1 cut(s)	351
Hin6I	GCGC	4 cut(s)	84, 266, 281, 475
HinP1I	GCGC	4 cut(s)	84, 266, 281, 475
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	4 cut(s)	229, 308, 359, 718
HphI	GGTGA	4 cut(s)	199, 238, 466, 683
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	6 cut(s)	151, 175, 379, 531, 605, 729
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	6 cut(s)	54, 102, 256, 281, 446, 452
HpyAV	CCTTC	3 cut(s)	550, 641, 671
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	201, 570
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 287, 416
HpyF3I	CTNAG	3 cut(s)	42, 404, 528
Hsp92I	GRCGYC	1 cut(s)	351
HspAI	GCGC	4 cut(s)	84, 266, 281, 475
KflI	GGGWCCC	1 cut(s)	72
Kpn2I	TCCGGA	1 cut(s)	232
KroI	GCCGGC	2 cut(s)	16, 419
KroNI	GCCGGC	2 cut(s)	18, 421
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	8, 189, 600
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	1 cut(s)	58
MalI	GATC	3 cut(s)	10, 191, 602
MboI	GATC	3 cut(s)	8, 189, 600
MboII	GAAGA	4 cut(s)	134, 469, 574, 686
MlsI	TGGCCA	2 cut(s)	488, 518
MluNI	TGGCCA	2 cut(s)	488, 518
MlyI	GAGTC	4 cut(s)	238, 317, 353, 727
MmeI	TCCRAC	3 cut(s)	153, 174, 639
Mox20I	TGGCCA	2 cut(s)	488, 518
MroI	TCCGGA	1 cut(s)	232
MroNI	GCCGGC	2 cut(s)	16, 419
MscI	TGGCCA	2 cut(s)	488, 518
MseI	TTAA	3 cut(s)	429, 437, 693
Msp20I	TGGCCA	2 cut(s)	488, 518
MspA1I	CMGCKG	1 cut(s)	121
MspR9I	CCNGG	4 cut(s)	69, 167, 224, 323
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	6 cut(s)	84, 97, 251, 266, 281, 313
MwoI	GCNNNNNNNGC	3 cut(s)	43, 287, 416
NaeI	GCCGGC	2 cut(s)	18, 421
NciI	CCSGG	3 cut(s)	167, 224, 323
NdeII	GATC	3 cut(s)	8, 189, 600
NgoMIV	GCCGGC	2 cut(s)	16, 419
NlaIV	GGNNCC	4 cut(s)	73, 74, 108, 161
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 447
PdiI	GCCGGC	2 cut(s)	18, 421
PflFI	GACNNNGTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	484
PkrI	GCNGC	5 cut(s)	36, 48, 88, 123, 315
PleI	GAGTC	4 cut(s)	237, 316, 353, 726
PpsI	GAGTC	4 cut(s)	237, 316, 353, 726
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	4 cut(s)	73, 74, 108, 161
PspPI	GGNCC	3 cut(s)	72, 160, 397
PspPPI	RGGWCCY	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	2 cut(s)	275, 497
RsaNI	GTAC	2 cut(s)	274, 496
SaqAI	TTAA	3 cut(s)	429, 437, 693
SatI	GCNGC	5 cut(s)	35, 47, 87, 122, 314
Sau3AI	GATC	3 cut(s)	8, 189, 600
Sau96I	GGNCC	3 cut(s)	72, 160, 397
SchI	GAGTC	4 cut(s)	238, 317, 353, 727
ScrFI	CCNGG	4 cut(s)	69, 167, 224, 323
SetI	ASST	8 cut(s)	348, 393, 456, 516, 569, 582, 617, 690
SinI	GGWCC	3 cut(s)	72, 160, 397
SsiI	CCGC	8 cut(s)	35, 62, 87, 95, 121, 185, 313, 400
StyD4I	CCNGG	4 cut(s)	67, 165, 222, 321
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	7 cut(s)	112, 180, 254, 285, 318, 441, 721
TaqII	GACCGA	1 cut(s)	516
TauI	GCSGC	4 cut(s)	37, 89, 124, 316
Tru1I	TTAA	3 cut(s)	429, 437, 693
Tru9I	TTAA	3 cut(s)	429, 437, 693
TscAI	CASTG	2 cut(s)	203, 275
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	121, 638
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	2 cut(s)	203, 275
Tth111I	GACNNNGTC	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	484
VpaK11BI	GGWCC	3 cut(s)	72, 160, 397
XapI	RAATTY	7 cut(s)	114, 127, 217, 480, 695, 705, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.