Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009423

Physical Location & Seq

Genomic Coordinates Forward (+)

6578307 .. 6578663

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAGGTCGTCGTACCCTCGCTCTACTTTCCGGCAACCTCAGCCCTCGGAAATTCCCCGCCGTTTGCTTCCCCGGCGACCCAATTACCCGCCCAACAACTTCTACCACCAACGCCTTCGTCCCTGCCGCGCAAGCTTCATCGTCGAGCTTCTCTCCGACCACCGGAGCCTCCGGAAGCATGAAATCGACGCTGTGATCGCTAACTGCAAGTCCAGGCCCGAAGGCGTTGAGGTTTCTCCCGCCAATCGCATCGTCGCCTCCTTGTTCTACACGCAATGGGTCGACGTTCTCGAAGCCCTCGTTTATTTTTGGGAGTCCCGGCTGGACCAGGTTCATGATCGATCTCTCCCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C IBR OB_NTP_bind zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

119

Amino Acids

13.96

Weight (kDa)

9.9

Isoelectric Point (pI)

73.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01020 AT5G10370
fragaria_vesca	FvH4_1g20200
malus_domestica	MD01G1036600.v1.1 MD15G1318100.v1.1
prunus_persica	Prupe.6G193800_v2.0.a1
pyrus_communis	pycom01g06330 pycom01g06340 pycom01g06350 pycom15g28060
rosa_chinensis	RchiOBHm_Chr2g0112281
rosa_laevigata	RLG00000017968
rosa_multiflora	Rmu_co8243893.1_g000001 Rmu_sc0004467.1_g000026 Rmu_sc0011951.1_g000004
rosa_roxburghii	Rroxscaffold_2G00131560
rosa_rugosa	Rorug02G0179800
rosa_samantha	Rh2AG232200 Rh2BG245500 Rh2CG236400 Rh2DG239900
rosa_wichuraiana	Rw2G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	1 cut(s)	129
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	4 cut(s)	58, 89, 127, 240
AcsI	RAATTY	1 cut(s)	51
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	162
AjnI	CCWGG	2 cut(s)	212, 327
AluBI	AGCT	2 cut(s)	135, 148
AluI	AGCT	2 cut(s)	135, 148
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	216, 325
AsuC2I	CCSGG	2 cut(s)	73, 319
AvaII	GGWCC	1 cut(s)	325
BbvCI	CCTCAGC	1 cut(s)	39
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	2 cut(s)	214, 329
BcnI	CCSGG	2 cut(s)	73, 319
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	4 cut(s)	73, 214, 319, 329
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	216, 325
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	4 cut(s)	73, 214, 319, 329
BmsI	GCATC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bpu10I	CCTNAGC	1 cut(s)	39
BpuMI	CCSGG	2 cut(s)	73, 319
Bsa29I	ATCGAT	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	45, 71
BsaWI	WCCGGW	2 cut(s)	162, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	281
BseAI	TCCGGA	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	214, 329
BseCI	ATCGAT	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	45, 71
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	217
BshVI	ATCGAT	1 cut(s)	340
BsiSI	CCGG	5 cut(s)	31, 73, 163, 172, 319
BslFI	GGGAC	2 cut(s)	105, 301
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmFI	GGGAC	2 cut(s)	105, 301
BsnI	GGCC	1 cut(s)	217
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	195, 337, 341
BspACI	CCGC	4 cut(s)	58, 89, 127, 240
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	52
BspDI	ATCGAT	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	45, 71
BssMI	GATC	3 cut(s)	195, 337, 341
Bst2UI	CCWGG	2 cut(s)	214, 329
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	3 cut(s)	198, 340, 344
BstMBI	GATC	3 cut(s)	195, 337, 341
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 73, 132, 197
BstNI	CCWGG	2 cut(s)	214, 329
BstSCI	CCNGG	4 cut(s)	71, 212, 317, 327
BstUI	CGCG	1 cut(s)	129
Bsu15I	ATCGAT	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	217
BsuTUI	ATCGAT	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	133
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	216, 325
ClaI	ATCGAT	1 cut(s)	340
CseI	GACGC	1 cut(s)	197
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	179, 335
CviJI	RGCY	7 cut(s)	43, 135, 148, 168, 217, 296, 322
CviKI_1	RGCY	7 cut(s)	43, 135, 148, 168, 217, 296, 322
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	3 cut(s)	197, 339, 343
DpnII	GATC	3 cut(s)	195, 337, 341
Eco47I	GGWCC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	212, 327
FaeI	CATG	2 cut(s)	182, 338
FaiI	YATR	2 cut(s)	180, 336
FaqI	GGGAC	2 cut(s)	105, 301
FatI	CATG	2 cut(s)	178, 334
FauI	CCCGC	3 cut(s)	65, 96, 247
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	127
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	5 cut(s)	31, 73, 163, 172, 319
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	182, 338
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	5 cut(s)	31, 73, 163, 172, 319
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	49, 157
Hpy188III	TCNNGA	3 cut(s)	172, 290, 335
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	5 cut(s)	13, 146, 191, 257, 287
HpyAV	CCTTC	2 cut(s)	125, 215
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 73, 132, 197
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	182, 338
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	195, 337, 341
LmnI	GCTCC	1 cut(s)	165
LweI	GCATC	1 cut(s)	258
MabI	ACCWGGT	1 cut(s)	327
MaeII	ACGT	1 cut(s)	285
MalI	GATC	3 cut(s)	197, 339, 343
MboI	GATC	3 cut(s)	195, 337, 341
MluCI	AATT	2 cut(s)	51, 82
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	27, 48, 55, 179, 223, 268, 308
MroI	TCCGGA	1 cut(s)	171
MspI	CCGG	5 cut(s)	31, 73, 163, 172, 319
MspR9I	CCNGG	4 cut(s)	73, 214, 319, 329
MvaI	CCWGG	2 cut(s)	214, 329
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	4 cut(s)	40, 73, 132, 197
NciI	CCSGG	2 cut(s)	73, 319
NdeII	GATC	3 cut(s)	195, 337, 341
NlaIII	CATG	2 cut(s)	182, 338
NlaIV	GGNNCC	1 cut(s)	167
PagI	TCATGA	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 297
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	212, 327
PspGI	CCWGG	2 cut(s)	212, 327
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	216, 325
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SalI	GTCGAC	1 cut(s)	281
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	3 cut(s)	195, 337, 341
Sau96I	GGNCC	2 cut(s)	216, 325
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	4 cut(s)	73, 214, 319, 329
SetI	ASST	7 cut(s)	8, 40, 137, 150, 234, 288, 333
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	1 cut(s)	258
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	2 cut(s)	51, 82
SsiI	CCGC	4 cut(s)	58, 89, 127, 240
StyD4I	CCNGG	4 cut(s)	71, 212, 317, 327
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	5 cut(s)	144, 186, 282, 291, 340
TasI	AATT	2 cut(s)	51, 82
TauI	GCSGC	1 cut(s)	129
TspDTI	ATGAA	3 cut(s)	127, 195, 323
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.