Helicase associated domain (HA2) Add an annotation
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G01020 AT5G10370 |
| fragaria_vesca | FvH4_1g20200 |
| malus_domestica | MD01G1036600.v1.1 MD15G1318100.v1.1 |
| prunus_persica | Prupe.6G193800_v2.0.a1 |
| pyrus_communis | pycom01g06330 pycom01g06340 pycom01g06350 pycom15g28060 |
| rosa_chinensis | RchiOBHm_Chr2g0112281 |
| rosa_laevigata | RLG00000017968 |
| rosa_multiflora | Rmu_co8243893.1_g000001 Rmu_sc0004467.1_g000026 Rmu_sc0011951.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00131560 |
| rosa_rugosa | Rorug02G0179800 |
| rosa_samantha | Rh2AG232200 Rh2BG245500 Rh2CG236400 Rh2DG239900 |
| rosa_wichuraiana | Rw2G018020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1226 |
| AatII | GACGTC | 1 cut(s) | 4487 |
| Acc36I | ACCTGC | 3 cut(s) | 814, 4763, 5004 |
| Acc65I | GGTACC | 1 cut(s) | 2378 |
| AccB1I | GGYRCC | 2 cut(s) | 2378, 4890 |
| AccBSI | CCGCTC | 1 cut(s) | 4593 |
| AccI | GTMKAC | 2 cut(s) | 1201, 5018 |
| AccII | CGCG | 2 cut(s) | 19, 1311 |
| AclWI | GGATC | 4 cut(s) | 2387, 2400, 4279, 4369 |
| AcoI | YGGCCR | 3 cut(s) | 415, 1735, 5145 |
| AcuI | CTGAAG | 8 cut(s) | 1362, 1941, 2690, 3108, 3243, 3299, 4194, 4718 |
| AcvI | CACGTG | 2 cut(s) | 1490, 2399 |
| AcyI | GRCGYC | 4 cut(s) | 183, 1875, 2982, 4484 |
| AdeI | CACNNNGTG | 1 cut(s) | 1490 |
| AflIII | ACRYGT | 4 cut(s) | 3540, 4036, 4880, 4990 |
| AgeI | ACCGGT | 1 cut(s) | 321 |
| AjiI | CACGTC | 2 cut(s) | 3541, 4037 |
| Alw21I | GWGCWC | 2 cut(s) | 387, 4660 |
| Alw44I | GTGCAC | 1 cut(s) | 4656 |
| AlwI | GGATC | 4 cut(s) | 2387, 2400, 4279, 4369 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2614, 4385 |
| Ama87I | CYCGRG | 3 cut(s) | 2253, 4313, 4565 |
| ApaLI | GTGCAC | 1 cut(s) | 4656 |
| AseI | ATTAAT | 1 cut(s) | 2051 |
| AsiGI | ACCGGT | 1 cut(s) | 321 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 689, 1519 |
| Asp718I | GGTACC | 1 cut(s) | 2378 |
| AspLEI | GCGC | 3 cut(s) | 21, 283, 2656 |
| AspS9I | GGNCC | 5 cut(s) | 210, 319, 391, 4346, 5082 |
| AsuC2I | CCSGG | 5 cut(s) | 31, 313, 389, 1671, 4934 |
| AsuII | TTCGAA | 1 cut(s) | 1049 |
| AvaI | CYCGRG | 3 cut(s) | 2253, 4313, 4565 |
| AvaII | GGWCC | 2 cut(s) | 319, 391 |
| BaeGI | GKGCMC | 1 cut(s) | 4660 |
| BalI | TGGCCA | 1 cut(s) | 5147 |
| BamHI | GGATCC | 1 cut(s) | 2392 |
| BanI | GGYRCC | 2 cut(s) | 2378, 4890 |
| BanII | GRGCYC | 2 cut(s) | 387, 4365 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3789, 3821 |
| BauI | CACGAG | 3 cut(s) | 2786, 4594, 4661 |
| BbrPI | CACGTG | 2 cut(s) | 1490, 2399 |
| BbsI | GAAGAC | 2 cut(s) | 4039, 4953 |
| Bbv12I | GWGCWC | 2 cut(s) | 387, 4660 |
| BbvCI | CCTCAGC | 1 cut(s) | 39 |
| BceAI | ACGGC | 5 cut(s) | 28, 45, 170, 1722, 4392 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1114, 1148 |
| BciVI | GTATCC | 1 cut(s) | 3904 |
| BclI | TGATCA | 3 cut(s) | 1704, 2482, 3894 |
| BcnI | CCSGG | 5 cut(s) | 31, 313, 389, 1671, 4934 |
| BfaI | CTAG | 6 cut(s) | 284, 1209, 1353, 2549, 2568, 4113 |
| BfmI | CTRYAG | 7 cut(s) | 803, 1082, 2994, 3600, 3688, 4065, 4780 |
| BfuAI | ACCTGC | 3 cut(s) | 814, 4763, 5004 |
| BfuI | GTATCC | 1 cut(s) | 3904 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3355 |
| BglII | AGATCT | 2 cut(s) | 3514, 4673 |
| BlpI | GCTNAGC | 2 cut(s) | 3243, 3359 |
| Bme18I | GGWCC | 2 cut(s) | 319, 391 |
| BmeT110I | CYCGRG | 3 cut(s) | 2253, 4313, 4565 |
| BmgBI | CACGTC | 2 cut(s) | 3541, 4037 |
| BmgT120I | GGNCC | 5 cut(s) | 210, 319, 391, 4346, 5082 |
| BmrI | ACTGGG | 5 cut(s) | 1441, 2520, 3177, 4757, 5000 |
| BmuI | ACTGGG | 5 cut(s) | 1441, 2520, 3177, 4757, 5000 |
| BpiI | GAAGAC | 2 cut(s) | 4039, 4953 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 836, 868 |
| BpmI | CTGGAG | 5 cut(s) | 216, 3053, 4071, 4127, 4745 |
| Bpu10I | CCTNAGC | 3 cut(s) | 39, 853, 3336 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 3243, 3359 |
| Bpu14I | TTCGAA | 1 cut(s) | 1049 |
| BpuEI | CTTGAG | 4 cut(s) | 665, 3137, 3907, 4301 |
| BpuMI | CCSGG | 5 cut(s) | 31, 313, 389, 1671, 4934 |
| Bsa29I | ATCGAT | 1 cut(s) | 3300 |
| BsaAI | YACGTR | 2 cut(s) | 1490, 2399 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2844, 3402 |
| BsaHI | GRCGYC | 4 cut(s) | 183, 1875, 2982, 4484 |
| BsaWI | WCCGGW | 2 cut(s) | 156, 321 |
| Bse118I | RCCGGY | 4 cut(s) | 321, 393, 3011, 4560 |
| Bse1I | ACTGG | 9 cut(s) | 237, 853, 1447, 2515, 2728, 3084, 3172, 4752, 5006 |
| Bse3DI | GCAATG | 3 cut(s) | 275, 1499, 2543 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2844, 3402 |
| BseCI | ATCGAT | 1 cut(s) | 3300 |
| BseGI | GGATG | 8 cut(s) | 2530, 2821, 2943, 3490, 4123, 4422, 4444, 4906 |
| BseJI | GATNNNNATC | 2 cut(s) | 2844, 3402 |
| BseMI | GCAATG | 3 cut(s) | 275, 1499, 2543 |
| BseNI | ACTGG | 9 cut(s) | 237, 853, 1447, 2515, 2728, 3084, 3172, 4752, 5006 |
| BseRI | GAGGAG | 6 cut(s) | 102, 1315, 2323, 2655, 3606, 4742 |
| BseSI | GKGCMC | 1 cut(s) | 4660 |
| BseX3I | CGGCCG | 1 cut(s) | 415 |
| BseYI | CCCAGC | 4 cut(s) | 819, 2277, 3161, 5079 |
| BsgI | GTGCAG | 3 cut(s) | 896, 3036, 4791 |
| Bsh1236I | CGCG | 2 cut(s) | 19, 1311 |
| Bsh1285I | CGRYCG | 1 cut(s) | 418 |
| BshNI | GGYRCC | 2 cut(s) | 2378, 4890 |
| BshTI | ACCGGT | 1 cut(s) | 321 |
| BshVI | ATCGAT | 1 cut(s) | 3300 |
| BsiEI | CGRYCG | 1 cut(s) | 418 |
| BsiHKAI | GWGCWC | 2 cut(s) | 387, 4660 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2253, 4313, 4565 |
| BslFI | GGGAC | 6 cut(s) | 295, 404, 1435, 2776, 3491, 4849 |
| BsmBI | CGTCTC | 3 cut(s) | 364, 2250, 4800 |
| BsmFI | GGGAC | 6 cut(s) | 295, 404, 1435, 2776, 3491, 4849 |
| BsmI | GAATGC | 5 cut(s) | 755, 2954, 3956, 3973, 5120 |
| BsoBI | CYCGRG | 3 cut(s) | 2253, 4313, 4565 |
| Bsp119I | TTCGAA | 1 cut(s) | 1049 |
| Bsp1286I | GDGCHC | 3 cut(s) | 387, 4365, 4660 |
| Bsp1407I | TGTACA | 4 cut(s) | 1399, 2229, 4192, 4477 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 3243, 3359 |
| Bsp19I | CCATGG | 2 cut(s) | 3824, 4426 |
| BspDI | ATCGAT | 1 cut(s) | 3300 |
| BspFNI | CGCG | 2 cut(s) | 19, 1311 |
| BspHI | TCATGA | 2 cut(s) | 328, 3729 |
| BspMAI | CTGCAG | 2 cut(s) | 1086, 3692 |
| BspMI | ACCTGC | 3 cut(s) | 814, 4763, 5004 |
| BspPI | GGATC | 4 cut(s) | 2387, 2400, 4279, 4369 |
| BspQI | GCTCTTC | 3 cut(s) | 4038, 4813, 4991 |
| BspT104I | TTCGAA | 1 cut(s) | 1049 |
| BspT107I | GGYRCC | 2 cut(s) | 2378, 4890 |
| BsrBI | CCGCTC | 1 cut(s) | 4593 |
| BsrDI | GCAATG | 3 cut(s) | 275, 1499, 2543 |
| BsrFI | RCCGGY | 4 cut(s) | 321, 393, 3011, 4560 |
| BsrGI | TGTACA | 4 cut(s) | 1399, 2229, 4192, 4477 |
| BsrI | ACTGG | 9 cut(s) | 237, 853, 1447, 2515, 2728, 3084, 3172, 4752, 5006 |
| BssAI | RCCGGY | 4 cut(s) | 321, 393, 3011, 4560 |
| BssNAI | GTATAC | 1 cut(s) | 5019 |
| BssNI | GRCGYC | 4 cut(s) | 183, 1875, 2982, 4484 |
| BssSI | CACGAG | 3 cut(s) | 2786, 4594, 4661 |
| BssT1I | CCWWGG | 3 cut(s) | 2916, 3824, 4426 |
| Bst1107I | GTATAC | 1 cut(s) | 5019 |
| Bst2BI | CACGAG | 3 cut(s) | 2786, 4594, 4661 |
| Bst4CI | ACNGT | 9 cut(s) | 77, 832, 1206, 2326, 2740, 2771, 2975, 4574, 4844 |
| Bst6I | CTCTTC | 4 cut(s) | 4038, 4452, 4813, 4991 |
| BstACI | GRCGYC | 4 cut(s) | 183, 1875, 2982, 4484 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1490, 4769, 4871 |
| BstAUI | TGTACA | 4 cut(s) | 1399, 2229, 4192, 4477 |
| BstBAI | YACGTR | 2 cut(s) | 1490, 2399 |
| BstBI | TTCGAA | 1 cut(s) | 1049 |
| BstC8I | GCNNGC | 6 cut(s) | 632, 758, 3356, 3845, 4078, 4137 |
| BstDSI | CCRYGG | 2 cut(s) | 3824, 4426 |
| BstEII | GGTNACC | 1 cut(s) | 2204 |
| BstF5I | GGATG | 8 cut(s) | 2530, 2821, 2943, 3490, 4123, 4422, 4444, 4906 |
| BstFNI | CGCG | 2 cut(s) | 19, 1311 |
| BstHHI | GCGC | 3 cut(s) | 21, 283, 2656 |
| BstMCI | CGRYCG | 1 cut(s) | 418 |
| BstNSI | RCATGY | 4 cut(s) | 2522, 4869, 4884, 4994 |
| BstPI | GGTNACC | 1 cut(s) | 2204 |
| BstSFI | CTRYAG | 7 cut(s) | 803, 1082, 2994, 3600, 3688, 4065, 4780 |
| BstSLI | GKGCMC | 1 cut(s) | 4660 |
| BstUI | CGCG | 2 cut(s) | 19, 1311 |
| BstV2I | GAAGAC | 2 cut(s) | 4039, 4953 |
| BstX2I | RGATCY | 5 cut(s) | 2392, 3514, 4284, 4374, 4673 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1591, 2201 |
| BstYI | RGATCY | 5 cut(s) | 2392, 3514, 4284, 4374, 4673 |
| BstZ17I | GTATAC | 1 cut(s) | 5019 |
| BstZI | CGGCCG | 1 cut(s) | 415 |
| Bsu15I | ATCGAT | 1 cut(s) | 3300 |
| BsuI | GTATCC | 1 cut(s) | 3904 |
| BsuTUI | ATCGAT | 1 cut(s) | 3300 |
| BtgI | CCRYGG | 2 cut(s) | 3824, 4426 |
| BtrI | CACGTC | 2 cut(s) | 3541, 4037 |
| BtsCI | GGATG | 8 cut(s) | 2530, 2821, 2943, 3490, 4123, 4422, 4444, 4906 |
| BtsI | GCAGTG | 3 cut(s) | 4002, 4616, 4976 |
| BtsIMutI | CAGTG | 7 cut(s) | 1338, 3165, 4002, 4195, 4616, 4745, 4976 |
| BveI | ACCTGC | 3 cut(s) | 814, 4763, 5004 |
| Cac8I | GCNNGC | 6 cut(s) | 632, 758, 3356, 3845, 4078, 4137 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2614, 4385 |
| CciI | TCATGA | 2 cut(s) | 328, 3729 |
| CfoI | GCGC | 3 cut(s) | 21, 283, 2656 |
| Cfr10I | RCCGGY | 4 cut(s) | 321, 393, 3011, 4560 |
| Cfr13I | GGNCC | 5 cut(s) | 210, 319, 391, 4346, 5082 |
| ClaI | ATCGAT | 1 cut(s) | 3300 |
| CseI | GACGC | 3 cut(s) | 191, 1864, 2971 |
| CsiI | ACCWGGT | 1 cut(s) | 4886 |
| CspAI | ACCGGT | 1 cut(s) | 321 |
| DraI | TTTAAA | 1 cut(s) | 1897 |
| DraIII | CACNNNGTG | 1 cut(s) | 1490 |
| EaeI | YGGCCR | 3 cut(s) | 415, 1735, 5145 |
| EagI | CGGCCG | 1 cut(s) | 415 |
| Eam1104I | CTCTTC | 4 cut(s) | 4038, 4452, 4813, 4991 |
| EarI | CTCTTC | 4 cut(s) | 4038, 4452, 4813, 4991 |
| EciI | GGCGGA | 3 cut(s) | 607, 674, 3600 |
| Ecl136II | GAGCTC | 1 cut(s) | 385 |
| EclXI | CGGCCG | 1 cut(s) | 415 |
| Eco130I | CCWWGG | 3 cut(s) | 2916, 3824, 4426 |
| Eco24I | GRGCYC | 2 cut(s) | 387, 4365 |
| Eco32I | GATATC | 2 cut(s) | 3400, 3996 |
| Eco47I | GGWCC | 2 cut(s) | 319, 391 |
| Eco52I | CGGCCG | 1 cut(s) | 415 |
| Eco53kI | GAGCTC | 1 cut(s) | 385 |
| Eco57I | CTGAAG | 8 cut(s) | 1362, 1941, 2690, 3108, 3243, 3299, 4194, 4718 |
| Eco72I | CACGTG | 2 cut(s) | 1490, 2399 |
| Eco88I | CYCGRG | 3 cut(s) | 2253, 4313, 4565 |
| Eco91I | GGTNACC | 1 cut(s) | 2204 |
| EcoICRI | GAGCTC | 1 cut(s) | 385 |
| EcoO65I | GGTNACC | 1 cut(s) | 2204 |
| EcoRI | GAATTC | 1 cut(s) | 51 |
| EcoRV | GATATC | 2 cut(s) | 3400, 3996 |
| EcoT14I | CCWWGG | 3 cut(s) | 2916, 3824, 4426 |
| EcoT38I | GRGCYC | 2 cut(s) | 387, 4365 |
| ErhI | CCWWGG | 3 cut(s) | 2916, 3824, 4426 |
| Esp3I | CGTCTC | 3 cut(s) | 364, 2250, 4800 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1179, 1211, 2145, 2177 |
| FaqI | GGGAC | 6 cut(s) | 295, 404, 1435, 2776, 3491, 4849 |
| FauI | CCCGC | 7 cut(s) | 24, 65, 90, 128, 2129, 3331, 3883 |
| FauNDI | CATATG | 1 cut(s) | 4532 |
| FbaI | TGATCA | 3 cut(s) | 1704, 2482, 3894 |
| FblI | GTMKAC | 2 cut(s) | 1201, 5018 |
| FokI | GGATG | 8 cut(s) | 2517, 2828, 2950, 3497, 4130, 4409, 4451, 4893 |
| FriOI | GRGCYC | 2 cut(s) | 387, 4365 |
| FspBI | CTAG | 6 cut(s) | 284, 1209, 1353, 2549, 2568, 4113 |
| GlaI | GCGC | 3 cut(s) | 20, 282, 2655 |
| GsaI | CCCAGC | 4 cut(s) | 823, 2281, 3165, 5083 |
| GsuI | CTGGAG | 5 cut(s) | 216, 3053, 4071, 4127, 4745 |
| HgaI | GACGC | 3 cut(s) | 191, 1864, 2971 |
| HhaI | GCGC | 3 cut(s) | 21, 283, 2656 |
| Hin1I | GRCGYC | 4 cut(s) | 183, 1875, 2982, 4484 |
| Hin6I | GCGC | 3 cut(s) | 19, 281, 2654 |
| HinP1I | GCGC | 3 cut(s) | 19, 281, 2654 |
| HincII | GTYRAC | 5 cut(s) | 1202, 1995, 2721, 3184, 4336 |
| HindII | GTYRAC | 5 cut(s) | 1202, 1995, 2721, 3184, 4336 |
| HindIII | AAGCTT | 3 cut(s) | 127, 2159, 2702 |
| HpaI | GTTAAC | 2 cut(s) | 1995, 4336 |
| Hpy99I | CGWCG | 6 cut(s) | 49, 140, 185, 383, 1206, 5114 |
| HpyCH4III | ACNGT | 9 cut(s) | 77, 832, 1206, 2326, 2740, 2771, 2975, 4574, 4844 |
| HpyCH4IV | ACGT | 6 cut(s) | 1489, 2398, 3540, 4036, 4180, 4484 |
| HpySE526I | ACGT | 6 cut(s) | 1489, 2398, 3540, 4036, 4180, 4484 |
| Hsp92I | GRCGYC | 4 cut(s) | 183, 1875, 2982, 4484 |
| HspAI | GCGC | 3 cut(s) | 19, 281, 2654 |
| KpnI | GGTACC | 1 cut(s) | 2382 |
| Ksp22I | TGATCA | 3 cut(s) | 1704, 2482, 3894 |
| KspAI | GTTAAC | 2 cut(s) | 1995, 4336 |
| LguI | GCTCTTC | 3 cut(s) | 4038, 4813, 4991 |
| MabI | ACCWGGT | 1 cut(s) | 4886 |
| MaeI | CTAG | 6 cut(s) | 284, 1209, 1353, 2549, 2568, 4113 |
| MaeII | ACGT | 6 cut(s) | 1489, 2398, 3540, 4036, 4180, 4484 |
| MbiI | CCGCTC | 1 cut(s) | 4593 |
| MfeI | CAATTG | 3 cut(s) | 584, 1494, 5022 |
| MflI | RGATCY | 5 cut(s) | 2392, 3514, 4284, 4374, 4673 |
| MhlI | GDGCHC | 3 cut(s) | 387, 4365, 4660 |
| MlsI | TGGCCA | 1 cut(s) | 5147 |
| MluNI | TGGCCA | 1 cut(s) | 5147 |
| MlyI | GAGTC | 5 cut(s) | 169, 317, 730, 2348, 4625 |
| MmeI | TCCRAC | 2 cut(s) | 1431, 4312 |
| Mox20I | TGGCCA | 1 cut(s) | 5147 |
| MroXI | GAANNNNTTC | 2 cut(s) | 689, 1519 |
| MscI | TGGCCA | 1 cut(s) | 5147 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1842, 2180, 2199, 2327, 3393, 4535 |
| Msp20I | TGGCCA | 1 cut(s) | 5147 |
| MspA1I | CMGCKG | 8 cut(s) | 871, 1241, 2105, 2710, 3242, 3326, 3907, 4091 |
| MunI | CAATTG | 3 cut(s) | 584, 1494, 5022 |
| Mva1269I | GAATGC | 5 cut(s) | 755, 2954, 3956, 3973, 5120 |
| MvnI | CGCG | 2 cut(s) | 19, 1311 |
| NciI | CCSGG | 5 cut(s) | 31, 313, 389, 1671, 4934 |
| NcoI | CCATGG | 2 cut(s) | 3824, 4426 |
| NdeI | CATATG | 1 cut(s) | 4532 |
| NmeAIII | GCCGAG | 3 cut(s) | 931, 2017, 4900 |
| NmuCI | GTSAC | 6 cut(s) | 826, 1054, 2066, 2204, 2414, 2623 |
| NspI | RCATGY | 4 cut(s) | 2522, 4869, 4884, 4994 |
| NspV | TTCGAA | 1 cut(s) | 1049 |
| PaeR7I | CTCGAG | 2 cut(s) | 2253, 4565 |
| PagI | TCATGA | 2 cut(s) | 328, 3729 |
| PasI | CCCWGGG | 1 cut(s) | 4379 |
| PciI | ACATGT | 2 cut(s) | 4880, 4990 |
| PciSI | GCTCTTC | 3 cut(s) | 4038, 4813, 4991 |
| PctI | GAATGC | 5 cut(s) | 755, 2954, 3956, 3973, 5120 |
| PdmI | GAANNNNTTC | 2 cut(s) | 689, 1519 |
| PfoI | TCCNGGA | 1 cut(s) | 387 |
| PinAI | ACCGGT | 1 cut(s) | 321 |
| PleI | GAGTC | 5 cut(s) | 168, 316, 729, 2347, 4624 |
| PmaCI | CACGTG | 2 cut(s) | 1490, 2399 |
| PmlI | CACGTG | 2 cut(s) | 1490, 2399 |
| PpsI | GAGTC | 5 cut(s) | 168, 316, 729, 2347, 4624 |
| Ppu21I | YACGTR | 2 cut(s) | 1490, 2399 |
| PscI | ACATGT | 2 cut(s) | 4880, 4990 |
| PshBI | ATTAAT | 1 cut(s) | 2051 |
| PsiI | TTATAA | 1 cut(s) | 1226 |
| Psp124BI | GAGCTC | 1 cut(s) | 387 |
| PspCI | CACGTG | 2 cut(s) | 1490, 2399 |
| PspEI | GGTNACC | 1 cut(s) | 2204 |
| PspFI | CCCAGC | 4 cut(s) | 819, 2277, 3161, 5079 |
| PspPI | GGNCC | 5 cut(s) | 210, 319, 391, 4346, 5082 |
| PspXI | VCTCGAGB | 1 cut(s) | 4565 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4922, 4954 |
| PstI | CTGCAG | 2 cut(s) | 1086, 3692 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2614, 4385 |
| PsuI | RGATCY | 5 cut(s) | 2392, 3514, 4284, 4374, 4673 |
| PvuII | CAGCTG | 7 cut(s) | 871, 1241, 2105, 2710, 3242, 3907, 4091 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1842, 2180, 2199, 2327, 3393, 4535 |
| SacI | GAGCTC | 1 cut(s) | 387 |
| SalI | GTCGAC | 1 cut(s) | 1200 |
| SapI | GCTCTTC | 3 cut(s) | 4038, 4813, 4991 |
| Sau96I | GGNCC | 5 cut(s) | 210, 319, 391, 4346, 5082 |
| SchI | GAGTC | 5 cut(s) | 169, 317, 730, 2348, 4625 |
| SduI | GDGCHC | 3 cut(s) | 387, 4365, 4660 |
| SexAI | ACCWGGT | 1 cut(s) | 4886 |
| SfcI | CTRYAG | 7 cut(s) | 803, 1082, 2994, 3600, 3688, 4065, 4780 |
| Sfr274I | CTCGAG | 2 cut(s) | 2253, 4565 |
| SfuI | TTCGAA | 1 cut(s) | 1049 |
| SinI | GGWCC | 2 cut(s) | 319, 391 |
| SlaI | CTCGAG | 2 cut(s) | 2253, 4565 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1842, 2180, 2199, 2327, 3393, 4535 |
| SmlI | CTYRAG | 6 cut(s) | 644, 2253, 3116, 3922, 4280, 4565 |
| SmoI | CTYRAG | 6 cut(s) | 644, 2253, 3116, 3922, 4280, 4565 |
| SspI | AATATT | 2 cut(s) | 1265, 3312 |
| SspMI | CTAG | 6 cut(s) | 284, 1209, 1353, 2549, 2568, 4113 |
| SstI | GAGCTC | 1 cut(s) | 387 |
| StyI | CCWWGG | 3 cut(s) | 2916, 3824, 4426 |
| TaaI | ACNGT | 9 cut(s) | 77, 832, 1206, 2326, 2740, 2771, 2975, 4574, 4844 |
| TaiI | ACGT | 6 cut(s) | 1492, 2401, 3543, 4039, 4183, 4487 |
| TatI | WGTACW | 5 cut(s) | 863, 1399, 2229, 4192, 4477 |
| TauI | GCSGC | 5 cut(s) | 520, 756, 3230, 3776, 4593 |
| TscAI | CASTG | 7 cut(s) | 1345, 3172, 4009, 4195, 4616, 4752, 4976 |
| TseFI | GTSAC | 6 cut(s) | 826, 1054, 2066, 2204, 2414, 2623 |
| Tsp45I | GTSAC | 6 cut(s) | 826, 1054, 2066, 2204, 2414, 2623 |
| TspGWI | ACGGA | 2 cut(s) | 453, 1008 |
| TspRI | CASTG | 7 cut(s) | 1345, 3172, 4009, 4195, 4616, 4752, 4976 |
| VneI | GTGCAC | 1 cut(s) | 4656 |
| VpaK11BI | GGWCC | 2 cut(s) | 319, 391 |
| VspI | ATTAAT | 1 cut(s) | 2051 |
| XceI | RCATGY | 4 cut(s) | 2522, 4869, 4884, 4994 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 244, 1556 |
| XhoI | CTCGAG | 2 cut(s) | 2253, 4565 |
| XmiI | GTMKAC | 2 cut(s) | 1201, 5018 |
| XmnI | GAANNNNTTC | 2 cut(s) | 689, 1519 |
| XspI | CTAG | 6 cut(s) | 284, 1209, 1353, 2549, 2568, 4113 |
| ZraI | GACGTC | 1 cut(s) | 4485 |