AT4G05440

Cell division cycle protein 123 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003334
Physical Location & Seq
Forward (+)
2757163 .. 2758585
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G05440.1

Sequence Viewer

Length: 1002 bp
ATGAAGGAAGACGAAGTAAATCGATGCCAGATTCAGAATTGGTATCCGAGATTCAAATCCTTAACCATCAAAACCAAATTTCACAAACTTCCAGAATCATTCATCAACTATCTCATCGACGATTCTGGTCCGTTTCTTCTCCCTCATTCCGTAACAAACGAAGACGCAATGCCTAACAGAGTCCACAATTTCGAAGAAGAAGATGATTTCCAAGTCCCCGAAGAAGCTTCAGATGACGAACCATTGAATCGTCCTTCTTTTCCAGAACTCGAAATCGAGATCAGAGAATCAATCGAAACCCTAGGCGGCACAATTATCCCGAAGCTGAATTGGAGTTCACCAAAAGACGCAGCTTGGATTAGTCCATCACAGAATCTAAGCTGCACTTGTTTCAATGAGATTGCTCTCTTGTTTCGTTCCTCTGATTCGTTAACCCATGATCTCTTCAATGCTTATGATTCATGTAGTGACAAAGTCTCTTCAAGGCCAGAAAGTTTCTACCTTGCGTTGAGAAAATGGTACCCTTCGTTGAAGCCTGAGATGGAATTTAGATGCTTTGTGAAATCTAACGAGCTTGTTGGGATTTGTCAGCGTGAGGTAACTACATTTTACCCTGTTCTTCTCAATGAGAAGGATTTGCTCAAGGGTTTGATAGAAGAGTTCTTTGATGATAAGATTAGGTTTGAATTTGAATCAGAGAATTACACTTTTGATGTTTATGTGACGAAAGAGAGAAGAGTTAAGCTAATAGATTTCAATACTTGGTGTGGTTCTACTTTGCCATTGATGTATACATGGGAAGAACTTGAGAAGATTCATGGAGAATGTGATGAATTGGAATTGAGGATTGTTGAGAGCCGTCTCAGTGTGCTTCCTGGTTTGAAAACAGCTGTTCCTTATGATTATCTTGACGTGAGTGCTGGTAGTGGTTGGGCTCAGGTTCTTAAGATAGTGGAAGAGGAGTTTCAGAAAGACGATCAGAGTTCTGATGAAGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
D123

Protein Analysis

333

Amino Acids

38.78

Weight (kDa)

4.55

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
D123 PF07065 14 - 305 1.5e-94 D123
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 519
AccI GTMKAC 1 cut(s) 791
AciI CCGC 1 cut(s) 306
AcsI RAATTY 3 cut(s) 77, 545, 686
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 521
AflII CTTAAG 1 cut(s) 944
AjiI CACGTC 1 cut(s) 913
AjnI CCWGG 1 cut(s) 874
AluBI AGCT 7 cut(s) 227, 325, 353, 381, 574, 745, 890
AluI AGCT 7 cut(s) 227, 325, 353, 381, 574, 745, 890
Alw26I GTCTC 2 cut(s) 481, 866
AoxI GGCC 1 cut(s) 485
ApeKI GCWGC 2 cut(s) 350, 381
ApoI RAATTY 3 cut(s) 77, 545, 686
Asp718I GGTACC 1 cut(s) 519
AspA2I CCTAGG 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 330
AsuII TTCGAA 1 cut(s) 192
AvaII GGWCC 1 cut(s) 128
AvrII CCTAGG 1 cut(s) 301
BanI GGYRCC 1 cut(s) 519
BanII GRGCYC 1 cut(s) 937
BbsI GAAGAC 2 cut(s) 15, 168
BbvI GCAGC 2 cut(s) 362, 368
BccI CCATC 3 cut(s) 74, 373, 535
BceAI ACGGC 1 cut(s) 843
BciT130I CCWGG 1 cut(s) 876
BciVI GTATCC 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 481, 866
BfaI CTAG 1 cut(s) 302
BfrI CTTAAG 1 cut(s) 944
BfuI GTATCC 1 cut(s) 54
BisI GCNGC 3 cut(s) 307, 351, 382
BlnI CCTAGG 1 cut(s) 301
BlsI GCNGC 3 cut(s) 308, 352, 383
Bme1390I CCNGG 1 cut(s) 876
Bme18I GGWCC 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 913
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 521
BmrFI CCNGG 1 cut(s) 876
BmsI GCATC 2 cut(s) 14, 542
BpiI GAAGAC 2 cut(s) 15, 168
Bpu10I CCTNAGC 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 626, 827
Bsa29I ATCGAT 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 55
BseBI CCWGG 1 cut(s) 876
BseCI ATCGAT 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 55
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 3 cut(s) 528, 877, 950
BseRI GAGGAG 1 cut(s) 974
BseXI GCAGC 2 cut(s) 362, 368
BsgI GTGCAG 1 cut(s) 367
BshFI GGCC 1 cut(s) 487
BshNI GGYRCC 1 cut(s) 519
BshVI ATCGAT 1 cut(s) 22
BslFI GGGAC 1 cut(s) 200
BsmAI GTCTC 2 cut(s) 481, 866
BsmBI CGTCTC 1 cut(s) 866
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 487
Bsp119I TTCGAA 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 937
Bsp143I GATC 3 cut(s) 279, 439, 976
BspACI CCGC 1 cut(s) 306
BspANI GGCC 1 cut(s) 487
BspCNI CTCAG 3 cut(s) 529, 876, 949
BspDI ATCGAT 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 521
BspT104I TTCGAA 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 519
BspTI CTTAAG 1 cut(s) 944
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 3 cut(s) 279, 439, 976
BssNAI GTATAC 1 cut(s) 792
BssT1I CCWWGG 1 cut(s) 301
Bst1107I GTATAC 1 cut(s) 792
Bst2UI CCWGG 1 cut(s) 876
Bst6I CTCTTC 5 cut(s) 449, 484, 651, 730, 951
BstAFI CTTAAG 1 cut(s) 944
BstBI TTCGAA 1 cut(s) 192
BstDEI CTNAG 4 cut(s) 377, 537, 863, 936
BstKTI GATC 3 cut(s) 282, 442, 979
BstMAI GTCTC 2 cut(s) 481, 866
BstMBI GATC 3 cut(s) 279, 439, 976
BstNI CCWGG 1 cut(s) 876
BstSCI CCNGG 1 cut(s) 874
BstV1I GCAGC 2 cut(s) 362, 368
BstV2I GAAGAC 2 cut(s) 15, 168
BstZ17I GTATAC 1 cut(s) 792
Bsu15I ATCGAT 1 cut(s) 22
BsuI GTATCC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 487
BsuTUI ATCGAT 1 cut(s) 22
BtrI CACGTC 1 cut(s) 913
BtsIMutI CAGTG 1 cut(s) 871
Cfr13I GGNCC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 22
CseI GACGC 2 cut(s) 173, 356
Csp6I GTAC 1 cut(s) 520
CviAII CATG 4 cut(s) 437, 462, 795, 818
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 4 cut(s) 377, 537, 863, 936
DpnI GATC 3 cut(s) 281, 441, 978
DpnII GATC 3 cut(s) 279, 439, 976
Eam1104I CTCTTC 5 cut(s) 449, 484, 651, 730, 951
EarI CTCTTC 5 cut(s) 449, 484, 651, 730, 951
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 937
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 937
ErhI CCWWGG 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 866
FaeI CATG 4 cut(s) 440, 465, 798, 821
FaiI YATR 8 cut(s) 438, 456, 463, 720, 792, 796, 819, 900
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 436, 461, 794, 817
FblI GTMKAC 1 cut(s) 791
Fnu4HI GCNGC 3 cut(s) 307, 351, 382
FriOI GRGCYC 1 cut(s) 937
Fsp4HI GCNGC 3 cut(s) 307, 351, 382
FspBI CTAG 1 cut(s) 302
GluI GCNGC 3 cut(s) 307, 351, 382
HaeIII GGCC 1 cut(s) 487
HgaI GACGC 2 cut(s) 173, 356
Hin1II CATG 4 cut(s) 440, 465, 798, 821
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HindIII AAGCTT 1 cut(s) 225
HpaI GTTAAC 1 cut(s) 432
HphI GGTGA 1 cut(s) 330
Hpy166II GTNNAC 4 cut(s) 184, 338, 432, 792
Hpy188I TCNGA 9 cut(s) 36, 48, 232, 284, 424, 697, 969, 981, 988
Hpy188III TCNNGA 5 cut(s) 92, 263, 277, 319, 908
Hpy8I GTNNAC 4 cut(s) 184, 338, 432, 792
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 264, 534, 625
HpyCH4IV ACGT 1 cut(s) 912
HpyCH4V TGCA 1 cut(s) 384
HpyF3I CTNAG 4 cut(s) 377, 537, 863, 936
HpySE526I ACGT 1 cut(s) 912
Hsp92II CATG 4 cut(s) 440, 465, 798, 821
KpnI GGTACC 1 cut(s) 523
KspAI GTTAAC 1 cut(s) 432
Kzo9I GATC 3 cut(s) 279, 439, 976
Lsp1109I GCAGC 2 cut(s) 362, 368
LweI GCATC 2 cut(s) 14, 542
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 912
MaeIII GTNAC 4 cut(s) 151, 467, 598, 721
MalI GATC 3 cut(s) 281, 441, 978
MboI GATC 3 cut(s) 279, 439, 976
MhlI GDGCHC 1 cut(s) 937
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 5 cut(s) 153, 430, 589, 837, 952
MseI TTAA 4 cut(s) 62, 431, 741, 945
MspA1I CMGCKG 1 cut(s) 890
MspCI CTTAAG 1 cut(s) 944
MspR9I CCNGG 1 cut(s) 876
MvaI CCWGG 1 cut(s) 876
NdeII GATC 3 cut(s) 279, 439, 976
NlaIII CATG 4 cut(s) 440, 465, 798, 821
NlaIV GGNNCC 1 cut(s) 521
NmuCI GTSAC 2 cut(s) 467, 721
NspV TTCGAA 1 cut(s) 192
PflFI GACNNNGTC 1 cut(s) 473
PkrI GCNGC 3 cut(s) 308, 352, 383
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 874
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 1 cut(s) 521
PspPI GGNCC 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 473
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
SaqAI TTAA 4 cut(s) 62, 431, 741, 945
SatI GCNGC 3 cut(s) 307, 351, 382
Sau3AI GATC 3 cut(s) 279, 439, 976
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 876
SduI GDGCHC 1 cut(s) 937
SfaNI GCATC 2 cut(s) 14, 542
SfuI TTCGAA 1 cut(s) 192
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 3 cut(s) 641, 806, 944
SmoI CTYRAG 3 cut(s) 641, 806, 944
SsiI CCGC 1 cut(s) 306
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 874
StyI CCWWGG 1 cut(s) 301
TaiI ACGT 1 cut(s) 915
TaqI TCGA 6 cut(s) 22, 117, 192, 270, 276, 294
TauI GCSGC 1 cut(s) 309
Tru1I TTAA 4 cut(s) 62, 431, 741, 945
Tru9I TTAA 4 cut(s) 62, 431, 741, 945
TscAI CASTG 1 cut(s) 871
TseFI GTSAC 2 cut(s) 467, 721
TseI GCWGC 2 cut(s) 350, 381
Tsp45I GTSAC 2 cut(s) 467, 721
TspDTI ATGAA 5 cut(s) 17, 91, 450, 806, 846
TspGWI ACGGA 2 cut(s) 120, 139
TspRI CASTG 1 cut(s) 871
Tth111I GACNNNGTC 1 cut(s) 473
Vha464I CTTAAG 1 cut(s) 944
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 3 cut(s) 77, 545, 686
XmaJI CCTAGG 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 791
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.